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Rosas-Cruz M, Madariaga Mazón A, García-Mejía CD, Hernández-Vázquez E, Gómez-Velasco H, Jiménez-Faraco E, Farías-Gaytán RS, Hermoso JA, Martínez-Caballero S. Identification of Potential Inhibitors of Mycobacterium tuberculosis Amidases: An Integrated In Silico and Experimental Study. ACS OMEGA 2024; 9:46461-46471. [PMID: 39583660 PMCID: PMC11579945 DOI: 10.1021/acsomega.4c07964] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/29/2024] [Revised: 10/10/2024] [Accepted: 10/29/2024] [Indexed: 11/26/2024]
Abstract
Virtual screening is a crucial tool in early stage drug discovery for identifying potential hit candidates. Here, we present an integrated approach that combines theoretical and experimental techniques to identify, for the first time, inhibitors of amidases (Ami1-Ami4) from Mycobacterium tuberculosis. Through computational methods, we proposed a set of potential inhibitors, which were subsequently evaluated experimentally using differential scanning fluorimetry. This led to the identification of two promising hits: a carbohydrazide core (hit 1) and a tetrazole core (hit 5). We further developed a small collection of compounds derived from hit 1, which demonstrated improved affinity for Ami1. Additionally, we determined the crystallographic structure of the Ami1-hit 5 complex at a resolution of 1.45 Å, providing molecular-level insights into the interaction of this compound within the catalytic site. The findings of this study contribute to the advancement of drug discovery against tuberculosis and propose new targets for therapeutic development.
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Affiliation(s)
- Maciel Rosas-Cruz
- Instituto
de Química, Universidad Nacional
Autonóma de México, A. Universidad 3000, Ciudad Universitaria, CP 04510 Ciudad de México, Mexico
| | - Abraham Madariaga Mazón
- Unidad
Mérida del Instituto de Química, Universidad Nacional Autónoma de México, Km. 5.5 Carr. Sierra Papacal-Chuburna
Pto. Sierra Papacal, CP 97302 Yucatán, Mexico
| | - Carlos D. García-Mejía
- Instituto
de Química, Universidad Nacional
Autonóma de México, A. Universidad 3000, Ciudad Universitaria, CP 04510 Ciudad de México, Mexico
| | - Eduardo Hernández-Vázquez
- Instituto
de Química, Universidad Nacional
Autonóma de México, A. Universidad 3000, Ciudad Universitaria, CP 04510 Ciudad de México, Mexico
| | - Homero Gómez-Velasco
- Instituto
de Química, Universidad Nacional
Autonóma de México, A. Universidad 3000, Ciudad Universitaria, CP 04510 Ciudad de México, Mexico
| | - Eva Jiménez-Faraco
- Department
of Crystallography and structural Biology, Instituto de Química-Física
“Blas Cabrera”, Consejo Superior
de Investigaciones Científicas, E-28006 Madrid, Spain
| | - Roberto Sealtiel Farías-Gaytán
- Instituto
de Química, Universidad Nacional
Autonóma de México, A. Universidad 3000, Ciudad Universitaria, CP 04510 Ciudad de México, Mexico
| | - Juan A. Hermoso
- Department
of Crystallography and structural Biology, Instituto de Química-Física
“Blas Cabrera”, Consejo Superior
de Investigaciones Científicas, E-28006 Madrid, Spain
| | - Siseth Martínez-Caballero
- Instituto
de Química, Universidad Nacional
Autonóma de México, A. Universidad 3000, Ciudad Universitaria, CP 04510 Ciudad de México, Mexico
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2
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Zhang X, Zhao R, Qi Y, Yan X, Qi G, Peng Q. The progress of Mycobacterium tuberculosis drug targets. Front Med (Lausanne) 2024; 11:1455715. [PMID: 39497852 PMCID: PMC11533868 DOI: 10.3389/fmed.2024.1455715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2024] [Accepted: 10/02/2024] [Indexed: 11/07/2024] Open
Abstract
Tuberculosis (TB) has been troubling humans for hundreds of years, is a highly infectious disease caused by Mycobacterium tuberculosis (Mtb) infection, Mtb can infect almost all organs of the body and is one of the deadly infectious diseases in the world. At present, the first-line treatment regimen has a long treatment cycle and is prone to multiple drug resistance. Anti-tuberculosis drugs and latent tuberculosis infection (LTBI) resistance are increasing year by year, and new targets and new bioactive compounds are urgently needed to treat this disease. This review focuses on the latest reported anti-TB drug targets and related compounds in recent years, reviews the current TB drug regimen and major defects, outlines the key drug targets developed to date in Mtb, and the current situation of newly discovered anti-TB resistant forms of drugs. To provide a reference for the research and development of new anti-TB drugs and bring new treatment strategies for TB patients.
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Affiliation(s)
- Xin Zhang
- Qingdao Central Hospital, University of Health and Rehabilitation Sciences, Qingdao Central Medical Group, Qingdao, Shandong, China
| | - Ruixia Zhao
- Qingdao Central Hospital, University of Health and Rehabilitation Sciences, Qingdao Central Medical Group, Qingdao, Shandong, China
| | - Yao Qi
- Qingdao Central Hospital, University of Health and Rehabilitation Sciences, Qingdao Central Medical Group, Qingdao, Shandong, China
| | - Xiong Yan
- Qingdao Central Hospital, University of Health and Rehabilitation Sciences, Qingdao Central Medical Group, Qingdao, Shandong, China
| | - Gaoxiu Qi
- Qingdao Central Hospital, University of Health and Rehabilitation Sciences, Qingdao Central Medical Group, Qingdao, Shandong, China
| | - Qiuju Peng
- Qingdao Chest Hospital, Qingdao, Shandong, China
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3
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Gong Y, Wang J, Li F, Zhu B. Polysaccharides and glycolipids of Mycobacterium tuberculosis and their induced immune responses. Scand J Immunol 2023; 97:e13261. [PMID: 39008002 DOI: 10.1111/sji.13261] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2022] [Revised: 02/05/2023] [Accepted: 02/16/2023] [Indexed: 07/16/2024]
Abstract
Tuberculosis (TB) is a chronic infectious disease mainly caused by Mycobacterium tuberculosis (M. tuberculosis). The structures of polysaccharides and glycolipids at M. tuberculosis cell wall vary among different strains, which affect the physiology and pathogenesis of mycobacteria by activating or inhibiting innate and acquired immunity. Among them, some components such as lipomannan (LM) and lipoarabinomannan (LAM) activate innate immunity by recognizing some kinds of pattern recognition receptors (PRRs) like Toll-like receptors, while other components like mannose-capped lipoarabinomannan (ManLAM) could prevent innate immune responses by inhibiting the secretion of pro-inflammatory cytokines and maturation of phagosomes. In addition, many glycolipids can activate natural killer T (NKT) cells and CD1-restricted T cells to produce interferon-γ (IFN-γ). Furthermore, humoral immunity against cell wall components, such as antibodies against LAM, plays a role in immunity against M. tuberculosis infection. Cell wall polysaccharides and glycolipids of M. tuberculosis have potential applications as antigens and adjuvants for novel TB subunit vaccines.
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Affiliation(s)
- Yang Gong
- Gansu Provincial Key Laboratory of Evidence Based Medicine and Clinical Translation & Lanzhou Center for Tuberculosis Research, Institute of Pathogen Biology, School of Basic Medical Sciences, Lanzhou University, Lanzhou, China
| | - Juan Wang
- Gansu Provincial Key Laboratory of Evidence Based Medicine and Clinical Translation & Lanzhou Center for Tuberculosis Research, Institute of Pathogen Biology, School of Basic Medical Sciences, Lanzhou University, Lanzhou, China
| | - Fei Li
- Gansu Provincial Key Laboratory of Evidence Based Medicine and Clinical Translation & Lanzhou Center for Tuberculosis Research, Institute of Pathogen Biology, School of Basic Medical Sciences, Lanzhou University, Lanzhou, China
| | - Bingdong Zhu
- Gansu Provincial Key Laboratory of Evidence Based Medicine and Clinical Translation & Lanzhou Center for Tuberculosis Research, Institute of Pathogen Biology, School of Basic Medical Sciences, Lanzhou University, Lanzhou, China
- State Key Laboratory of Veterinary Etiological Biology, College of Veterinary Medicine, Lanzhou University, Lanzhou, China
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4
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Huang S, Cao L, Li W, Lin Z, Zhang P. Evaluation of tribological and biological properties of
TaB
2
/
PEEK
composite coatings prepared by electrodeposition. J Appl Polym Sci 2022. [DOI: 10.1002/app.52265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Suyuan Huang
- Institute of Advances Wear and Corrosion Resistant and Functional Materials Jinan University Guangzhou China
| | - Lin Cao
- Institute of Advances Wear and Corrosion Resistant and Functional Materials Jinan University Guangzhou China
| | - Wei Li
- Institute of Advances Wear and Corrosion Resistant and Functional Materials Jinan University Guangzhou China
| | - Zhidan Lin
- Institute of Advances Wear and Corrosion Resistant and Functional Materials Jinan University Guangzhou China
| | - Peng Zhang
- Institute of Advances Wear and Corrosion Resistant and Functional Materials Jinan University Guangzhou China
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5
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Kieswetter NS, Ozturk M, Hlaka L, Chia JE, Nichol RJO, Cross JM, McGee LMC, Tyson-Hirst I, Beveridge R, Brombacher F, Carter KC, Suckling CJ, Scott FJ, Guler R. OUP accepted manuscript. J Antimicrob Chemother 2022; 77:1061-1071. [PMID: 35084027 PMCID: PMC8969509 DOI: 10.1093/jac/dkac001] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Accepted: 12/20/2021] [Indexed: 11/14/2022] Open
Abstract
Background Objectives Methods Results Conclusions
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Affiliation(s)
- Nathan S. Kieswetter
- International Centre for Genetic Engineering and Biotechnology, Cape Town Component, Cape Town 7925, South Africa
- Department of Pathology, University of Cape Town, Institute of Infectious Diseases and Molecular Medicine (IDM), Division of Immunology and South African Medical Research Council (SAMRC) Immunology of Infectious Diseases, Faculty of Health Sciences, University of Cape Town, Cape Town 7925, South Africa
| | - Mumin Ozturk
- International Centre for Genetic Engineering and Biotechnology, Cape Town Component, Cape Town 7925, South Africa
- Department of Pathology, University of Cape Town, Institute of Infectious Diseases and Molecular Medicine (IDM), Division of Immunology and South African Medical Research Council (SAMRC) Immunology of Infectious Diseases, Faculty of Health Sciences, University of Cape Town, Cape Town 7925, South Africa
| | - Lerato Hlaka
- International Centre for Genetic Engineering and Biotechnology, Cape Town Component, Cape Town 7925, South Africa
- Department of Pathology, University of Cape Town, Institute of Infectious Diseases and Molecular Medicine (IDM), Division of Immunology and South African Medical Research Council (SAMRC) Immunology of Infectious Diseases, Faculty of Health Sciences, University of Cape Town, Cape Town 7925, South Africa
| | - Julius Ebua Chia
- International Centre for Genetic Engineering and Biotechnology, Cape Town Component, Cape Town 7925, South Africa
- Department of Pathology, University of Cape Town, Institute of Infectious Diseases and Molecular Medicine (IDM), Division of Immunology and South African Medical Research Council (SAMRC) Immunology of Infectious Diseases, Faculty of Health Sciences, University of Cape Town, Cape Town 7925, South Africa
| | - Ryan J. O. Nichol
- Department of Pure and Applied Chemistry, University of Strathclyde, Glasgow G1 1XL, Scotland
| | - Jasmine M. Cross
- Department of Pure and Applied Chemistry, University of Strathclyde, Glasgow G1 1XL, Scotland
| | - Leah M. C. McGee
- Department of Pure and Applied Chemistry, University of Strathclyde, Glasgow G1 1XL, Scotland
| | - Izaak Tyson-Hirst
- Department of Pure and Applied Chemistry, University of Strathclyde, Glasgow G1 1XL, Scotland
| | - Rebecca Beveridge
- Department of Pure and Applied Chemistry, University of Strathclyde, Glasgow G1 1XL, Scotland
| | - Frank Brombacher
- International Centre for Genetic Engineering and Biotechnology, Cape Town Component, Cape Town 7925, South Africa
- Department of Pathology, University of Cape Town, Institute of Infectious Diseases and Molecular Medicine (IDM), Division of Immunology and South African Medical Research Council (SAMRC) Immunology of Infectious Diseases, Faculty of Health Sciences, University of Cape Town, Cape Town 7925, South Africa
- Wellcome Centre for Infectious Diseases Research in Africa (CIDRI-Africa), Institute of Infectious Disease and Molecular Medicine (IDM), Faculty of Health Sciences, University of Cape Town, Cape Town 7925, South Africa
| | - Katharine C. Carter
- Strathclyde Institute of Pharmacy of Biomedical Sciences, University of Strathclyde, Glasgow G4 0NR, Scotland
| | - Colin J. Suckling
- Department of Pure and Applied Chemistry, University of Strathclyde, Glasgow G1 1XL, Scotland
| | - Fraser J. Scott
- Department of Pure and Applied Chemistry, University of Strathclyde, Glasgow G1 1XL, Scotland
| | - Reto Guler
- International Centre for Genetic Engineering and Biotechnology, Cape Town Component, Cape Town 7925, South Africa
- Department of Pathology, University of Cape Town, Institute of Infectious Diseases and Molecular Medicine (IDM), Division of Immunology and South African Medical Research Council (SAMRC) Immunology of Infectious Diseases, Faculty of Health Sciences, University of Cape Town, Cape Town 7925, South Africa
- Wellcome Centre for Infectious Diseases Research in Africa (CIDRI-Africa), Institute of Infectious Disease and Molecular Medicine (IDM), Faculty of Health Sciences, University of Cape Town, Cape Town 7925, South Africa
- Corresponding author. E-mail:
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