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Meng F, Yin X, Zhang T, Zhao C, Xue X, Xia X, Zhu X, Duan Z, Liu B, Liu Y. The first determination and analysis of the complete mitochondrial genome of Ancistrus temmincki (Siluriformes: Loricariidae). MITOCHONDRIAL DNA PART B-RESOURCES 2021; 6:1583-1585. [PMID: 34027063 PMCID: PMC8110184 DOI: 10.1080/23802359.2020.1866446] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
In order to fully comprehend the evolution and kinship of fishes in the family of Loricariidae, the complete mitochondrial genome of the Loricariidae fish Ancistrus temmincki was firstly characterized in the present study. The whole mitogenome was 16,657 bp in size and consisted of 13 protein-coding genes, 22 tRNAs, 2 rRNAs genes, a control region and origin of light-strand replication. The proportion of coding sequences with a total length of 11,473 bp was 68.88%, which encoded 3,813 amino acids. The genome composition was highly A + T biased (56.29%), and exhibited AT-skew (0.0661) and a negative GC-skew (–0.2740). All protein-coding genes were started with ATG except for GTG in CO1, while stopped with the standard TAN codons or a single T. The control region (D-loop) ranging from 15,635 bp to 16,657 bp was 1023 bp in size. Until now, there is hardly any studies on the complete mitochondrial sequence in the genus of Ancistrus, phylogenetic analysis showed that A. temmincki was most closely related to Ancistrus cryptophthalmus in the genus of Ancistrus. The complete mitochondrial genome sequence has provided a new insight into the taxonomic classification, and a more complex picture of the species diversity within the family of Loricariidae.
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Affiliation(s)
- Fang Meng
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China.,National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Xiaolong Yin
- Zhoushan Fisheries Research Institute of Zhejiang Province, Zhoushan, China
| | - Tao Zhang
- Zhejiang Province Key Lab of Mariculture and Enhancement, Marine Fisheries Research Institute of Zhejiang, Zhoushan, China
| | - Chunyan Zhao
- School of Marine Science and Engineering, Qingdao Agricultural University, 266109, Qingdao, China
| | - Xianglong Xue
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China.,National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Xianglong Xia
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China.,National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Xintao Zhu
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China.,National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Zaixian Duan
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China.,National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Bingjian Liu
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China.,National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Yifan Liu
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China.,National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
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Yang L, Zhu K, Fang J, Liu L, Lü Z. Characterization of the complete mitochondrial genome of Cottiusculus nihonkaiensis (Scorpaeniformes, Cottidae) and phylogenetic studies of Scorpaeniformes. MITOCHONDRIAL DNA PART B-RESOURCES 2021; 6:358-360. [PMID: 33659676 PMCID: PMC7872543 DOI: 10.1080/23802359.2020.1866456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
In this study, the complete mitochondrial genome of Cottiusculus nihonkaiensis was presented, and we also discussed its mitochondrial characteristics. The full length of the mitochondrial genome was 16,612 bp, containing 13 protein-coding genes (PCGs), two ribosomal RNAs (12S and 16S), 22 transfer RNA genes (tRNA), one non-coding control region (CR) and one origin of replication on the light-strand. Overall base composition of the complete mitochondrial DNA was 26.4% A, 17.4% G, 31.5% C, 24.7% T. The phylogenetic tree suggested that C. nihonkaiensis shared the most recent common ancestor with Gymnocanthus herzensteini, Gymnocanthus intermedius and Gymnocanthus tricuspis.
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Affiliation(s)
- Lele Yang
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China.,National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Kehua Zhu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China.,National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Jiaqi Fang
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China.,National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Liqin Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China.,National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Zhenming Lü
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China.,National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
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Li W, Chen X, Zheng M, Wang Y, Zhou X, Li H, Zhou G, Li B. Complete mitochondrial genome of Sinogastromyzon szechuanensis (Teleostei, Cypriniformes, Balitoridae) obtained using next-generation sequencing. Mitochondrial DNA B Resour 2021; 6:69-70. [PMID: 33521270 PMCID: PMC7819126 DOI: 10.1080/23802359.2020.1846471] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
Abstract
The complete mitogenome sequence of Sinogastromyzon szechuanensis was obtained using next generation sequencing and confirmed via overlap-PCR method. The genome was 16,565 bp in length and consisted of 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 23 transfer RNA genes and 1 control region. The overall nucleotide composition of heavy strand was 30.38% A (5033), 16.62% G (2753), 25.25% T (4182) and 27.75 (4597), with a slight A–T skew (55.63%), which is most obvious in the D-loop and most transfer RNA genes. Mitochondrial genome analyses based on ML analyses yielded identical phylogenetic trees.
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Affiliation(s)
- Wei Li
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu, China
- Department of Fishery Sciences and Technology, Jiangsu Agri-animal Husbandry Vocational College, Taizhou, Jiangsu, China
| | - Xiaggojiang Chen
- Department of Fishery Sciences and Technology, Jiangsu Agri-animal Husbandry Vocational College, Taizhou, Jiangsu, China
| | - Mengmeng Zheng
- Jiangyan County Agricultural and Rural Bureau, Taizhou, Jiangsu, China
| | - Yin Wang
- Department of Fishery Sciences and Technology, Jiangsu Agri-animal Husbandry Vocational College, Taizhou, Jiangsu, China
| | - Xingchen Zhou
- Department of Fishery Sciences and Technology, Jiangsu Agri-animal Husbandry Vocational College, Taizhou, Jiangsu, China
| | - Haiyang Li
- Department of Fishery Sciences and Technology, Jiangsu Agri-animal Husbandry Vocational College, Taizhou, Jiangsu, China
| | - Guolong Zhou
- Department of Fishery Sciences and Technology, Jiangsu Agri-animal Husbandry Vocational College, Taizhou, Jiangsu, China
| | - Bichun Li
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu, China
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Meng F, Chen J, Miao Z, Zhu K, Huang Y, Wang Q, Liu B, Liu Y. Phylogenetic analysis of the complete mitochondrial genome of Orestias ascotanensis (Cyprinodontiformes, Cyprinodontidae). Mitochondrial DNA B Resour 2019; 4:3884-3885. [PMID: 33366234 PMCID: PMC7707391 DOI: 10.1080/23802359.2019.1687033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2019] [Accepted: 10/26/2019] [Indexed: 11/26/2022] Open
Abstract
The complete mitochondrial genome of this species was first determined in this study, which is 16,617 bp in length, containing 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, a putative control region, and 1 origin of replication on the light-strand. The overall base composition includes C(27.11%), A(26.68%), T(29.15%), G(17.04%) and three degenerate bases are R, R and S. Moreover, the 13 PCGs encode 3800 amino acids in total, 12 of which use the initiation codon ATG except COI that uses GTG. Most of them have TAA as the stop codon, whereas ND5 ends with AGA, four protein-coding genes (ND1, ND2, ND3 and Cytb) ended with TAG, and two protein-coding genes (COII and ND4) ended with the incomplete stop codon represented as a single T. The phylogenetic tree based on the Neighbor Joining method was constructed to provide relationship within Cyprinodontidae, which could be a useful basis for management of this species.
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Affiliation(s)
- Fang Meng
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Jian Chen
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Zengliang Miao
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Kehua Zhu
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Youkun Huang
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Qi Wang
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Bingjian Liu
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Yifan Liu
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
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Liu Y, Meng F, Liu B, Huang Y, Wang Q, Zhang T. The complete mitochondrial genome of Paracheirodon axelrodi (Characiformes: Characidae) and phylogenetic studies of Characiformes. Mitochondrial DNA B Resour 2019; 4:3824-3825. [PMID: 33366205 PMCID: PMC7707614 DOI: 10.1080/23802359.2019.1681307] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2019] [Accepted: 10/13/2019] [Indexed: 11/24/2022] Open
Abstract
The Paracheirodon axelrodi is an important freshwater fish in the Amazon basin of South America, more expensive than Paracheirodon innesi. Here, we describe the complete 17,100 base pair (bp) mitochondrial genome of Paracheirodon axelrodi mohavensis. The mitogenome has a nucleotide base composition of A (29.62%), T (29.41%), G (15.39%), and C (25.62%), and encodes 13 protein subunits, 22 tRNAs, a 12S rRNA of 952 bp and 16S rRNA of 1665 bp, and a 1433 bp D-loop control region, each located in the conserved mtDNA structure typical for Characidae fishes. All protein-coding genes have initiation codons of ATG, ND1, ND2, CO2, ND3, ND4L, ND5, ND6 and Cytb ended by TAA as a stop codon, ND4 ended by AGA as a stop codon, CO1 ended by AGG as a stop codon, ATP8 and CO3 ended by TAG as a stop codon, ATP6 ended by ATT as a stop codon. This characterised mitogenome may help inform management practices for Paracheirodon axelrodi mohavensis by facilitating future studies on how allopatric populations of this imperilled species are evolving across refuge habitats.
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Affiliation(s)
- Yifan Liu
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Fang Meng
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Bingjian Liu
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Youkun Huang
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Qi Wang
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Tao Zhang
- Zhejiang Province Key Lab of Mariculture and Enhancement, Marine Fisheries Research Institute of Zhejiang, Zhoushan, China
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Huang Y, Liu B, Meng F, Wang Q, Zhu K, Zhang J, Jing F, Xia L, Liu Y. The complete mitochondrial genome of Poecilia formosa ( Poecilia, Cyprinodontidae) and phylogenetic studies of cyprinodontiformes. Mitochondrial DNA B Resour 2019; 4:3820-3821. [PMID: 33366203 PMCID: PMC7707524 DOI: 10.1080/23802359.2019.1681308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2019] [Accepted: 10/13/2019] [Indexed: 11/01/2022] Open
Abstract
We report the complete mitochondrial genome sequence of Poecilia formosa. The genome is found to be 16636 bp in length and has a base composition of A (29.59%), G (14.61%), C (28.26%), and T (27.54%). Similar to other Poecilia species, it contains a typically conserved structure including 13 protein-coding genes, 2 rRNA genes, 1 control region (D-loop), and 22tRNA genes. The proportion of coding sequences with a total length of 11,533 bp is 69.33%, which encodes 3837 amino acids. All protein-coding genes started with Met, ND1, CO1, ATP8, ATP6, CO3, ND4L, ND5, ND6 and CytB ended by TAA as a stop codon, ND2 and ND3 ended by TAG as a stop codon, CO3 and ND4 ended by a single T. The lengths of 12S ribosomal RNA is 948 bp, ranging from 70 bp to 1018 bp, and the lengths of 16S ribosomal RNA is 1674 bp, ranging from 1090 bp to 2764 bp. The length of control region is 879 bp, ranging from 15757 bp to 16636 bp, respectively. The complete mitochondrial genome sequence provided here would be useful for further understanding the evolution of ratite and conservation genetics of Poecilia formosa.
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Affiliation(s)
- Youkun Huang
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Bingjian Liu
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Fang Meng
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Qi Wang
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Kehua Zhu
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Jianshe Zhang
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Fei Jing
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Liping Xia
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Yifan Liu
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
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Zhu K, Gao Y, Yuan P, Cao P, Ying X, Tao H, Liu B. The complete mitochondrial genome of ostorhinchus fleurieu (kurtiformes: Apogonidae) and phylogenetic studies of apogoninae. Mitochondrial DNA B Resour 2019; 4:3691-3692. [PMID: 33366146 PMCID: PMC7707501 DOI: 10.1080/23802359.2019.1679681] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2019] [Accepted: 09/25/2019] [Indexed: 11/08/2022] Open
Abstract
The complete mitochondrial genome of Ostorhinchus fleurieu was first determined, which was 16,521 bp in length, containing 13 protein-coding genes, two rRNA genes, 22 tRNA genes, a putative control region and one origin of replication on the light-strand. The overall base composition included C(29.2%), A(26.7%), T(26.7%) and G(17.4%). Moreover, the 13 PCGs encoded 3800 amino acids in total, twelve of which used the initiation codon ATG except for COI started with GTG. Most of them ended with complete stop codon, whereas three protein-coding genes (COII, ND4 and Cytb) used incomplete stop codon and represented as T. The phylogenetic tree based on the Neighbour Joining method was constructed to provide relationship within Apogoninae, which could be a useful basis for management of this species.
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Affiliation(s)
- Kehua Zhu
- National engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- Key Laboratory of Informatization of Habitat Monitoring and Fishery Resource Conservation Research in the East China Sea of Zhejiang Province, Zhejiang Ocean University, Zhoushan, China
| | - Yuanpei Gao
- Key Laboratory of Aquatic Products Processing of Zhejiang Province, Department of Food Science and Pharmacy, Zhejiang Ocean University, Zhoushan, China
| | - Pengxiang Yuan
- Key Laboratory of Aquatic Products Processing of Zhejiang Province, Department of Food Science and Pharmacy, Zhejiang Ocean University, Zhoushan, China
| | - Pinglin Cao
- Key Laboratory of Informatization of Habitat Monitoring and Fishery Resource Conservation Research in the East China Sea of Zhejiang Province, Zhejiang Ocean University, Zhoushan, China
| | - Xiaoguo Ying
- Key Laboratory of Aquatic Products Processing of Zhejiang Province, Department of Food Science and Pharmacy, Zhejiang Ocean University, Zhoushan, China
| | - Hengcong Tao
- Key Laboratory of Aquatic Products Processing of Zhejiang Province, Department of Food Science and Pharmacy, Zhejiang Ocean University, Zhoushan, China
| | - Bingjian Liu
- National engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- Key Laboratory of Informatization of Habitat Monitoring and Fishery Resource Conservation Research in the East China Sea of Zhejiang Province, Zhejiang Ocean University, Zhoushan, China
- Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
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Wang Z, Miao Z, Yin X, Chen J, Ying X. Phylogenetic analysis of the complete mitochondrial genome of Dysomma anguillare (Anguilliformes, Synaphobranchidae). Mitochondrial DNA B Resour 2019. [DOI: 10.1080/23802359.2019.1602006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
Affiliation(s)
- Zuhao Wang
- Department of Food Science and Pharmacy, Key Laboratory of Aquatic Products Processing of Zhejiang Province, Zhejiang Ocean University, Zhoushan, PR China
| | - Zengliang Miao
- Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, PR China
| | - Xiaolong Yin
- Zhoushan Fisheries Research Institute of Zhejiang Province, Zhoushan, PR China
| | - Jian Chen
- Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, PR China
| | - Xiaoguo Ying
- Department of Food Science and Pharmacy, Key Laboratory of Aquatic Products Processing of Zhejiang Province, Zhejiang Ocean University, Zhoushan, PR China
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Huang Y, Liu B, Zhu K, Zhang J, Jing F, Xia L, Liu Y. The complete mitochondrial genome of Gephyrocharax atracaudatus (Characiformes, Characidae) and phylogenetic studies of Characiformes. Mitochondrial DNA B Resour 2019. [DOI: 10.1080/23802359.2018.1532830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022] Open
Affiliation(s)
- Youkun Huang
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Bingjian Liu
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Kehua Zhu
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Jianshe Zhang
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Fei Jing
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Liping Xia
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Yifan Liu
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
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10
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Liu Y, Meng F, Yin X, Huang Y, Zhu K, Zhang J, Jing F, Xia L, Liu B. The complete mitochondrial genome of Dermogenys pusilla (Beloniformes: Hemiramphidae) and phylogenetic studies of Beloniformes. Mitochondrial DNA B Resour 2019. [DOI: 10.1080/23802359.2019.1612715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022] Open
Affiliation(s)
- Yifan Liu
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Fang Meng
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Xiaolong Yin
- Zhoushan Fisheries Research Institute of Zhejiang Province, Zhoushan, China
| | - Youkun Huang
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Kehua Zhu
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Jianshe Zhang
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Fei Jing
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Liping Xia
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Bingjian Liu
- National Engineering Research Center for Marine Aquaculture, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
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11
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Liu Y, Huang Y, Zhu K, Meng F, Zhang J, Jing F, Xia L, Liu B. The complete mitochondrial genome of Hepsetus odoe (Hepsetidae, characoidei) and phylogenetic studies of characoidei. Mitochondrial DNA B Resour 2019. [DOI: 10.1080/23802359.2018.1542994] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022] Open
Affiliation(s)
- Yifan Liu
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Youkun Huang
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Kehua Zhu
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Fang Meng
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Jianshe Zhang
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Fei Jing
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Liping Xia
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Bingjian Liu
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
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Meng F, Huang Y, Liu B, Zhu K, Zhang J, Jing F, Xia L, Liu Y. The complete mitochondrial genome of Lebiasina astrigata (Characiformes: Lebiasinida) and phylogenetic studies of Characiformes. MITOCHONDRIAL DNA PART B 2019. [DOI: 10.1080/23802359.2018.1558124] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Fang Meng
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Youkun Huang
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Bingjian Liu
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Kehua Zhu
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Jianshe Zhang
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Fei Jing
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Liping Xia
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
| | - Yifan Liu
- National Engineering Research Center for Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
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13
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Wang Z, Liu Y, Feng W, Chen L, Miao Z, Chen J. The complete mitochondrial genome of Sardinella fijiensis (Clupeiformes: clupeidae) and phylogenetic studies of clupeidae. Mitochondrial DNA B Resour 2019. [DOI: 10.1080/23802359.2019.1598301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
Affiliation(s)
- Zhifu Wang
- Key Laboratory of Engineering Oceanography, Second Institute of Oceanography, MNR, Hangzhou, China
| | - Yifan Liu
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Weihua Feng
- Key Laboratory of Engineering Oceanography, Second Institute of Oceanography, MNR, Hangzhou, China
| | - Lihong Chen
- Key Laboratory of Engineering Oceanography, Second Institute of Oceanography, MNR, Hangzhou, China
| | - Zengliang Miao
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Jian Chen
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
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14
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Liu B, Liu Y, Zhu K, Liu L, Jiang L, Gong L, Liu Z, Zhang W, Duan W, Lü Z. Characterization of complete mitochondrial genome of Jaydia lineata (Perciformes, Apogonidae). Mitochondrial DNA B Resour 2018; 3:1025-1026. [PMID: 33474401 PMCID: PMC7800898 DOI: 10.1080/23802359.2018.1511844] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Accepted: 08/10/2018] [Indexed: 11/01/2022] Open
Abstract
The complete mitogenome of Jaydia lineata was sequenced, which is a closed double-stranded circular molecule of 16,506 bp, and we analyzed the main features in terms of the genome organization, gene arrangement, and codon usage. The overall base composition includes C(28.5%), A(27.2%), T(26.7%), and G(17.6%). Moreover, the 13 protein-coding genes encode 3797 amino acids in total, 12 of which use the initiation codon ATG except COI uses GTG. Most of them have TAA as the stop codon, whereas ND3 ends with TAG, and three protein-coding genes (COII, ND4, and Cytb) use ended with the incomplete stop codon represented as a single T. The phylogenetic tree based on the neighbour-joining method was conducted, using a concatenated set of 12 protein-coding genes, and adding nine other species of Perciformes, which could be a useful basis for management of this species.
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Affiliation(s)
- Bingjian Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, PR China
- Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, PR China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, PR China
| | - Yifan Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, PR China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, PR China
| | - Kehua Zhu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, PR China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, PR China
| | - Liqin Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, PR China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, PR China
| | - Lihua Jiang
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, PR China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, PR China
| | - Li Gong
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, PR China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, PR China
| | - Zhu Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, PR China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, PR China
| | - Weinan Zhang
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, PR China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, PR China
| | - Wen Duan
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, PR China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, PR China
| | - Zhenming Lü
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, PR China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, PR China
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15
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Zhu K, Lü Z, Liu B, Gong L, Jiang L, Liu L. The complete mitochondrial genome of Hyporhamphus quoyi (Beloniformes; Hemiramphidae). Mitochondrial DNA B Resour 2018; 3:1235-1236. [PMID: 33474474 PMCID: PMC7799565 DOI: 10.1080/23802359.2018.1532339] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Accepted: 08/31/2018] [Indexed: 11/21/2022] Open
Abstract
The complete mitogenome of Hyporhamphus quoyi was sequenced, which is a closed double-stranded circular molecule of 16,511 bp, and we analyzed the main features in terms of the genome organization, gene arrangement and codon usage. The overall base composition includes A(27.4%), T(26.0%), C(30.4%) and G(16.2%). Moreover, the 13 protein-coding genes (PCGs) encode 3804 amino acids in total, 12 of which use the initiation codon ATG except COI uses GTG, most of them have a complete stop codon, whereas Cytb ends with the incomplete stop codon represented as a single T. The phylogenetic tree based on the neighbor-Joining method was conducted to provide relationship within Beloniformes, based on 12 PCGs encoded by the heavy strand, the NJ tree demonstrated that H. quoyi has a closest relationship with Hyporhamphus intermedius, which could be a useful basis for propagation of this species.
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Affiliation(s)
- Kehua Zhu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
| | - Zhenming Lü
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
| | - Bingjian Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
| | - Li Gong
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
| | - Lihua Jiang
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
| | - Liqin Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
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16
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Liu B, Zhu K, Liu Y, Jiang L, Lü Z, Liu L, Zhang W, Liu Z, Duan W, Gong L. Complete mitochondrial genome of the vulnerable malabar pufferfish Carinotetraodon travancoricus (Tetraodontiformes, Tetraodontidae). Mitochondrial DNA B Resour 2018; 3:1023-1024. [PMID: 33490556 PMCID: PMC7800267 DOI: 10.1080/23802359.2018.1511843] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Accepted: 08/10/2018] [Indexed: 11/17/2022] Open
Abstract
Carinotetraodon travancoricus was classified as vulnerable on the IUCN Red List due to habitat loss and overharvesting for the aquarium trade. To gain its molecular information and thus contribute to help in conserving this vulnerable species, we determined the complete mitochondrial DNA of the C. travancoricus. The size of the molecule is 16,542 nucleotides, containing 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, a putative control region, and 1 origin of replication on the light-strand. The overall base composition includes C(28.8%), A(28.5%), T(27.1%), and G(15.6%). Moreover, the 13 PCGs encode 3800 amino acids in total. The result of the phylogenetic tree supports C. octofasciatus has a closest relationship with Tetraodon nigroviridis.
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Affiliation(s)
- Bingjian Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Marine Science and Technology College, Zhoushan, China
- Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Scienceand Technology, Qingdao, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Kehua Zhu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Marine Science and Technology College, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Yifan Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Marine Science and Technology College, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Lihua Jiang
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Marine Science and Technology College, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Zhenming Lü
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Marine Science and Technology College, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Liqin Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Marine Science and Technology College, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Weinan Zhang
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Marine Science and Technology College, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Zhu Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Marine Science and Technology College, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Wen Duan
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Marine Science and Technology College, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine Science and Technology College, Zhejiang Ocean University, Zhoushan, China
| | - Li Gong
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Marine Science and Technology College, Zhoushan, China
- Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Scienceand Technology, Qingdao, China
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17
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Zhu K, Lü Z, Liu L, Gong L, Jiang L, Liu B. The complete mitochondrial genome of Hyporhamphus dussumieri (Beloniformes; hemiramphidae) and phylogenetic studies of Beloniformes. Mitochondrial DNA B Resour 2018; 3:1233-1234. [PMID: 33490575 PMCID: PMC7800999 DOI: 10.1080/23802359.2018.1532338] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Accepted: 08/31/2018] [Indexed: 10/30/2022] Open
Abstract
The Hyporhamphus dussumieri is a kind of minor commercial fishes, usually marketed fresh and dried salted. However, to date, there is a limited genetic resource available for this species. In this study, we assembled the whole mitochondrial genome of this species yielding a 16,542 bp circular assembly composed of the typical vertebrate mitochondrial features. It contains 13 protein-coding genes, two rRNA genes, 22 tRNA genes, a putative control region, and one origin of replication on the light-strand. The overall base composition includes C(28.3%), A(28.9%), T(27.1%), and G(15.7%). Moreover, the 13 PCGs encode 3800 amino acids in total. The result of the phylogenetic tree supports H. dussumieri has a closest relationship with Hemiramphus far.
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Affiliation(s)
- Kehua Zhu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
| | - Zhenming Lü
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
| | - Liqin Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
| | - Li Gong
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
| | - Lihua Jiang
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
| | - Bingjian Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
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18
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Lü Z, Zhu K, Liu L, Liu B, Jiang L, Gong L. Phylogenetic analysis of the complete mitochondrial genome of Hyporhamphus limbatus (Beloniformes; hemiramphidae). Mitochondrial DNA B Resour 2018; 3:1292-1293. [PMID: 33474497 PMCID: PMC7800168 DOI: 10.1080/23802359.2018.1532342] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Accepted: 08/31/2018] [Indexed: 11/05/2022] Open
Abstract
The first complete mitochondrial (mt) genome of Hyporhamphus limbatus is reported herein, the gene composition and arrangement in H. limbatus mitogenome were identical to those of most vertebrates, which is 16,508 bp in length and contains 13 PCGs, two rRNA genes (12S rRNA and 16S rRNA), 22 tRNA genes, and a putative control region (CR) and one origin of replication on the light-strand (OL). Two start codon patterns and three stop codon patterns were found in protein-coding genes. Only the tRNA-Ser(AGY) could not fold into a typical clover-leaf secondary structure for lacking the dihydrouridine arm. A phylogenetic tree based on the neighbour-joining method was constructed to provide relationship within Beloniformes, which could be a useful basis for management of this species.
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Affiliation(s)
- Zhenming Lü
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college Zhejiang Ocean University, Zhoushan, China
| | - Kehua Zhu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college Zhejiang Ocean University, Zhoushan, China
| | - Liqin Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college Zhejiang Ocean University, Zhoushan, China
| | - Bingjian Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college Zhejiang Ocean University, Zhoushan, China
| | - Lihua Jiang
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college Zhejiang Ocean University, Zhoushan, China
| | - Li Gong
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college Zhejiang Ocean University, Zhoushan, China
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Zhu K, Lü Z, Liu B, Gong L, Jiang L, Liu L. The complete mitochondrial genome of Hemiramphus far (Beloniformes; Hemiramphidae) and phylogenetic studies of Beloniformes. Mitochondrial DNA B Resour 2018; 3:1237-1238. [PMID: 33474475 PMCID: PMC7800611 DOI: 10.1080/23802359.2018.1532340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Accepted: 08/31/2018] [Indexed: 11/18/2022] Open
Abstract
The complete mitochondrial genome of this species was first determined in this study, which is 16,544 bp in length, the overall base composition includes C(27.0%), A(30.7%), T(27.1%) and G(15.2%). Moreover, the 13 protein-coding genes (PCGs) encode 3801 amino acids in total, 12 of which use the initiation codon ATG except COI uses GTG, most of them have TAA or TAG as the stop codon, whereas four protein-coding genes (COII, COIII, ND4 and Cytb) ended with the incomplete stop codon represented as a single T. The phylogenetic tree based on the neighbour-joining method was constructed to provide relationship within Beloniformes, the result supported that H. far was clustered with Hyporhamphus dussumieri.
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Affiliation(s)
- Kehua Zhu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
| | - Zhenming Lü
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
| | - Bingjian Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
| | - Li Gong
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
| | - Lihua Jiang
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
| | - Liqin Liu
- National Engineering Laboratory of Marine Germplasm Resources Exploration and Utilization, Zhejiang Ocean University, Zhoushan, China
- National Engineering Research Center for Facilitated Marine Aquaculture, Marine science and technology college, Zhejiang Ocean University, Zhoushan, China
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