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Hao J, Lu Y, Dang M, Xia R, Xu L, Zhu Z, Yu Y. The complete chloroplast genome sequence of Plectranthus hadiensis (Lamiaceae) and phylogenetic analysis. Mitochondrial DNA B Resour 2023; 8:1049-1053. [PMID: 37810612 PMCID: PMC10557565 DOI: 10.1080/23802359.2023.2262689] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Accepted: 09/19/2023] [Indexed: 10/10/2023] Open
Abstract
Plants of the genus Plectranthus are used for the treatment of digestive problems, skin diseases, and allergies, with a wide variety of uses. Here, the complete chloroplast genome sequence of Plectranthus hadiensis (Benth. ex E.Mey) Codd. 1788 was assembled and characterized for the first time. The full length of the chloroplast genome is 152,484 bp, consisting of a small single-copy region of 17,686 bp, a large single-copy region of 83,380 bp, and a pair of inverted repeats of 51,418 bp. The overall GC content is 37.73%. The chloroplast genome contains 131 unique genes, including 87 protein-coding genes, 36 transfer RNA genes, and eight ribosomal RNA genes. Phylogenetic tree construction based on the complete chloroplast genome sequences of 25 species (23 Nepetoideae, two Ajugoideae) of the Lamiaceae family showed that P. hadiensis exhibited the closest relationship with Isodon.
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Affiliation(s)
- Jiaojiao Hao
- College of Horticulture Science, Ministry of Agriculture and Rural Affairs, Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, Zhejiang A&F University, Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Hangzhou, China
| | - Yanchi Lu
- College of Horticulture Science, Ministry of Agriculture and Rural Affairs, Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, Zhejiang A&F University, Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Hangzhou, China
| | - Menghuan Dang
- College of Horticulture Science, Ministry of Agriculture and Rural Affairs, Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, Zhejiang A&F University, Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Hangzhou, China
| | - Rui Xia
- College of Horticulture Science, Ministry of Agriculture and Rural Affairs, Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, Zhejiang A&F University, Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Hangzhou, China
| | - Liai Xu
- College of Horticulture Science, Ministry of Agriculture and Rural Affairs, Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, Zhejiang A&F University, Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Hangzhou, China
| | - Zhujun Zhu
- College of Horticulture Science, Ministry of Agriculture and Rural Affairs, Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, Zhejiang A&F University, Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Hangzhou, China
| | - Youjian Yu
- College of Horticulture Science, Ministry of Agriculture and Rural Affairs, Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, Zhejiang A&F University, Key Laboratory of Quality and Safety Control for Subtropical Fruit and Vegetable, Hangzhou, China
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Pei Y, Zhao G, Li X, Yu D, Cui N. The complete chloroplast genome and phylogenetic analysis of Salvia oxyphora Briq. 1896 (Nepetoideae, Lamiaceae). Mitochondrial DNA B Resour 2022; 7:1342-1344. [PMID: 35903304 PMCID: PMC9318231 DOI: 10.1080/23802359.2022.2098860] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022] Open
Abstract
Salvia oxyphora Briq. 1896 is a perennial herb in the family Lamiaceae native to Central Bolivia. In this study, the chloroplast genome of S. oxyphora was sequenced using the Illumina platform and was assembled for the first time. The complete plastid genome of S. oxyphora was 151,014 bp in length including a large single-copy (LSC) region of 82,293 bp, a small single-copy (SSC) region of 17,531 bp, and a pair of inverted repeats (IR) regions of 25,595 bp. The total GC content of this genome was 38.04%, and that of LSC, SSC and IR regions was 36.21%, 31.80% and 43.13%, respectively. A total of 114 unique genes of this genome have been annotated, including 80 protein-coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. The maximum likelihood phylogenetic tree was constructed with 51 complete chloroplast genomes, illustrating the close relationship of S. oxyphora to the Brazil’s native medicinal species S. splendens. The chloroplast genome of S. oxyphora provides a foundation for further studies on the adaptive evolution and genetic diversity of the genus Salvia.
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Affiliation(s)
- Yifei Pei
- Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Guiping Zhao
- Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Xiwen Li
- Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Dade Yu
- Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Ning Cui
- Central Laboratory, Shandong Academy of Chinese Medicine, Ji’nan, China
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Cai H, Liu X, Su Z, Ma Z. The complete chloroplast genome of Callicarpa rubella Lindl. (Lamiaceae) from Guangxi, China: genome structure and phylogenetic analysis. MITOCHONDRIAL DNA PART B-RESOURCES 2021; 6:3280-3282. [PMID: 34712812 PMCID: PMC8547871 DOI: 10.1080/23802359.2021.1993106] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The relationship between Callicarpa rubella Lindl. and its infraspecific taxa has troubled researchers for a long time. Here, we reported for the first time the complete chloroplast (cp) genome of C. rubella to investigate its phylogenetic position and provide more sequencing information for further studies about the relationship between C. rubella and its related species. The cp genome of C. rubella was 154,202 bp in length and displayed a typical quadripartite angiosperm structure, containing two inverted repeat (IR) regions of 25,701 bp, a large single-copy (LSC) region of 84,968 bp and a small single-copy (SSC) region of 17,832 bp. It contained 87 protein-coding genes, 37 tRNA genes and 8 rRNA genes. The analysis fully resolved C. rubella was in a clade with C. bodinieri and C. nudiflora. The results indicated Callicarpa formed a sister relationship with Dicrastylis parvifolia in Lamiaceae.
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Affiliation(s)
- Huimin Cai
- National Demonstration Center for Experimental Plant Science Education, Traditional Chinese Herbal Medicine Resources and Agriculturalization Research Institute, College of Agriculture, Guangxi University, Nanning, China
| | - Xing Liu
- National Demonstration Center for Experimental Plant Science Education, Traditional Chinese Herbal Medicine Resources and Agriculturalization Research Institute, College of Agriculture, Guangxi University, Nanning, China
| | - Zhiwei Su
- Institute of Marine Drugs, Guangxi University of Chinese Medicine, Nanning, China
| | - Zhonghui Ma
- National Demonstration Center for Experimental Plant Science Education, Traditional Chinese Herbal Medicine Resources and Agriculturalization Research Institute, College of Agriculture, Guangxi University, Nanning, China
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