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Park J, Lee W. The complete mitochondrial genome of Uroleucon erigeronense (Thomas, 1878) (Hemiptera: Aphididae). Mitochondrial DNA B Resour 2022; 7:84-86. [PMID: 34993319 PMCID: PMC8725879 DOI: 10.1080/23802359.2021.2008839] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
We have sequenced mitochondrial genome of Uroleucon erigeronense (Thomas, 1878) isolated from Erigeron canadensis in Korea. The circular mitogenome of U. erigeronense is 15,691 bp long including 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNAs, and a single control region of 968 bp. AT ratio is 84.2%. Additional phylogenetic studies of aphid mitogenomes are required due to the inconsistency found in the three phylogenetic trees.
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Affiliation(s)
- Jongsun Park
- InfoBoss Inc, Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
| | - Wonhoon Lee
- Department of Plant Medicine and Institute of Agriculture & Life Science, Gyeongsang National University, Jinju, Republic of Korea
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2
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Park J, Lee J, Park J. The investigation of intraspecific characteristics and comparative analyses of the complete mitochondrial genome of Stegobium paniceum (Linnaeus, 1758) (Coleoptera: Ptinidae) assembled from public NGS raw reads of the black truffle, Tuber melanosporum. Sci Prog 2022; 105:368504211072355. [PMID: 35040745 PMCID: PMC10358573 DOI: 10.1177/00368504211072355] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Due to the rapid development of NGS technologies, a huge amount of NGS raw reads have been accumulated in public repositories, such as the Short Read Archive of NCBI. We successfully rescued the complete mitochondrial genome of Stegobium paniceum, a drug store beetle, from public NGS raw reads of truffle generated from the whole genome project. The circular mitogenome of S. paniceum is 15,474 bp long including 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNAs, and a single large non-coding region of 803 bp. Intraspecific transfer RNAs structure and sequence variations were investigated and simple sequence repeats identified from three S. paniceum mitochondrial genomes were compared showing their diversities as fundamental data to utilize them in various aspects including developing efficient molecular markers in the family, Ptinidae. Phylogenetic analysis of 23 Bostrichoidea mitochondrial genomes presented better species identification based on phylogenetic analyses and the optimal options for constructing phylogenetic trees based on Bostrichoidea mitochondrial genomes. Our results present not only utilization of public NGS raw read sequences but also intraspecific features of S. paniceum mitochondrial genomes and comparative analysis of Bostrichoidea mitochondrial genomes in various aspects.
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Affiliation(s)
- Jongsun Park
- InfoBoss Inc., Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
| | - Jungmo Lee
- InfoBoss Inc., Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
| | - Jonghyun Park
- InfoBoss Inc., Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
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A New Mitochondrial Genome of Sogatella furcifera (Horváth) (Hemiptera: Delphacidae) and Mitogenome-Wide Investigation on Polymorphisms. INSECTS 2021; 12:insects12121066. [PMID: 34940154 PMCID: PMC8706918 DOI: 10.3390/insects12121066] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/28/2021] [Revised: 11/16/2021] [Accepted: 11/25/2021] [Indexed: 01/23/2023]
Abstract
Simple Summary We completed one mitogenome of white-backed planthopper (WBPH), Sogatella furcifera (Horváth), with finding heteroplasmy phenomenon confirmed by PCR reaction and Sanger sequencing method. This heteroplasmy was not observed in WBPHs (n = 24) collected from the fields, suggesting that it may be uncommon in fields. We also analyzed single nucleotide polymorphisms, insertion and deletions, and simple sequence repeats among three currently available WBPH mitogenomes of Korea and China, suggesting that identified intraspecific variations could be potential candidates for developing markers to distinguish geographical populations of WBPH including Korean and Chinese. Phylogenetic analysis of 32 mitogenomes of Delphacidae including the three WBPH mitogenomes suggested that Delphacinae seems to be monophyletic and Sogatella species including WBPH are clearly formed as one clade. Abstract White-backed planthopper (WBPH), Sogatella furcifera (Horváth), is one of the major sap-sucking rice pests in East Asia. We have determined a new complete mitochondrial genome of WBPH collected in the Korean peninsula using NGS technology. Its length and GC percentages are 16,613 bp and 23.8%, respectively. We observed one polymorphic site, a non-synonymous change, in the COX3 gene with confirmation heteroplasmy phenomenon within individuals of WBPH by PCR amplification and Sanger sequencing, the first report in this species. In addition, this heteroplasmy was not observed in wild WBPH populations, suggesting that it may be uncommon in fields. We analyzed single nucleotide polymorphisms, insertion, and deletions, and simple sequence repeats among the three WBPH mitogenomes from Korea and China and found diverse intraspecific variations, which could be potential candidates for developing markers to distinguish geographical populations. Phylogenetic analysis of 32 mitogenomes of Delphacidae including the three WBPH mitogenomes suggested that Delphacinae seems to be monophyletic and Sogatella species including WBPH are clearly formed as one clade. In the future, it is expected that complete mitogenomes of individuals of geographically dispersed WBPH populations will be used for further population genetic studies to understand the migration pathway of WBPH.
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A Comparative Analyses of the Complete Mitochondrial Genomes of Fungal Endosymbionts in Sogatella furcifera, White-Backed Planthoppers. Int J Genomics 2021; 2021:6652508. [PMID: 34212028 PMCID: PMC8208876 DOI: 10.1155/2021/6652508] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2020] [Revised: 04/03/2021] [Accepted: 05/08/2021] [Indexed: 12/20/2022] Open
Abstract
Sogatella furcifera Horvath, commonly known as the white-backed planthoppers (WBPH), is an important pest in East Asian rice fields. Fungal endosymbiosis is widespread among planthoppers in the infraorder Fulgoromorpha and suborder Auchenorrhyncha. We successfully obtained complete mitogenome of five WBPH fungal endosymbionts, belonging to the Ophiocordycipitaceae family, from next-generation sequencing (NGS) reads obtained from S. furcifera samples. These five mitogenomes range in length from 55,390 bp to 55,406 bp, which is shorter than the mitogenome of the fungal endosymbiont found in Ricania speculum, black planthoppers. Twenty-eight protein-coding genes (PCGs), 12 tRNAs, and 2 rRNAs were found in the mitogenomes. Two single-nucleotide polymorphisms, two insertions, and three deletions were identified among the five mitogenomes, which were fewer in number than those of four species of Ophiocordycipitaceae, Ophiocordyceps sinensis, Hirsutella thompsonii, Hirsutella rhossiliensis, and Tolypocladium inflatum. Noticeably short lengths (up to 18 bp) of simple sequence repeats were identified in the five WBPH fungal endosymbiont mitogenomes. Phylogenetic analysis based on conserved PCGs across 25 Ophiocordycipitaceae mitogenomes revealed that the five mitogenomes were clustered with that of R. speculum, forming an independent clade. In addition to providing the full mitogenome sequences, obtaining complete mitogenomes of WBPH endosymbionts can provide insights into their phylogenetic positions without needing to isolate the mtDNA from the host. This advantage is of value to future studies involving fungal endosymbiont mitogenomes.
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Complete Genome Sequence of the Endosymbiotic Bacterium " Candidatus Riesia pediculicola". Microbiol Resour Announc 2021; 10:10/18/e01181-20. [PMID: 33958407 PMCID: PMC8103877 DOI: 10.1128/mra.01181-20] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Abstract
Human head and body lice host the obligate endosymbiotic bacterium “Candidatus Riesia pediculicola.” In this announcement, we describe the complete genome sequence of a “Ca. Riesia pediculicola” strain isolated from the human head louse, Pediculus humanus subsp. capitis. The inter- and intraspecific variations of endosymbiont genomes were investigated, and this strain was found to display high-level variations in its genome. Human head and body lice host the obligate endosymbiotic bacterium “Candidatus Riesia pediculicola.” In this announcement, we describe the complete genome sequence of a “Ca. Riesia pediculicola” strain isolated from the human head louse, Pediculus humanus subsp. capitis. The inter- and intraspecific variations of endosymbiont genomes were investigated, and this strain was found to display high-level variations in its genome.
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Park J, Lee J, Lee W. The complete mitochondrial genome of Aphis gossypii Glover, 1877 (Hemiptera: Aphididae) isolated from Leonurus japonicus in Korea. MITOCHONDRIAL DNA PART B-RESOURCES 2021; 6:62-65. [PMID: 33521268 PMCID: PMC7819132 DOI: 10.1080/23802359.2020.1844096] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
We have determined the mitochondrial genome of A. gossypii isolated from Leonurus japonicus in Korea. The circular mitogenome of A. gossypii is 16,044 bp, including 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNAs, and a single control region of 797 bp. AT ratio is 83.8%. 88 SNPs and 4 INDELs (175 bp) were identified against mitogenome of A. gossypii isolated from cotton species. Especially, largest INDEL (170 bp) was in the control region. Phylogenetic trees show that four A. gossypii mitogenomes were clustered in one clade.
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Affiliation(s)
- Jongsun Park
- InfoBoss Inc., Seoul, Republic of Korea.,InfoBoss Research Center, Seoul, Republic of Korea
| | - Jungmo Lee
- InfoBoss Inc., Seoul, Republic of Korea.,InfoBoss Research Center, Seoul, Republic of Korea
| | - Wonhoon Lee
- Department of Plant Medicine and Institute of Agriculture & Life Science, Gyeongsang National University, Jinju, Republic of Korea
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Jung YJ, Jo J, Bae Y, Xi H, Seol MA, Yoo SH, Park J, Park C. The complete mitochondrial genome of Myzus persicae (Sulzer, 1776; Hemiptera: Aphididae) isolated in Korea. MITOCHONDRIAL DNA PART B-RESOURCES 2021; 6:10-12. [PMID: 33490586 PMCID: PMC7801038 DOI: 10.1080/23802359.2020.1842817] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
We de novo assembled the complete mitochondrial genome of the green peach aphid, Myzus persicae, using its genomic DNA isolated from the bell pepper in Korea. The circular mitogenome of M. persicae is 16,936 bp long and contains the standard 37 genes: 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes, as well as a single control region of 798 bp. Given the high AT ratio (84.1%) of the M. persicae mitogenome, we found, through the comparison of the Chinese M. persicae mitogenomes, that approximately 1.6% of the mitogenome is polymorphic, including 30 single nucleotide polymorphisms (SNPs), 12 insertions and deletions (INDELs), and large sequence variations in the control region. To resolve the phylogenetic position of M. persicae, we analyzed all mitochondrial protein-coding genes from 38 species within the Aphidoidea superfamily, with Adelges laricis as an outgroup. Our M. persicae sample was significantly grouped with three existing M. persicae samples, and the species belonging to the family Aphididae formed a monophyletic clade.
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Affiliation(s)
- Young Jun Jung
- National Institute of Ecology, Seocheon-gun, Republic of Korea
| | - Jihoon Jo
- School of Biological Sciences and Technology, Chonnam National University, Gwangju, Republic of Korea
| | - Yoonhyuk Bae
- InfoBoss Inc., Seoul, Republic of Korea.,InfoBoss Research Center, Seoul, Republic of Korea
| | - Hong Xi
- InfoBoss Inc., Seoul, Republic of Korea.,InfoBoss Research Center, Seoul, Republic of Korea
| | - Min-A Seol
- National Institute of Ecology, Seocheon-gun, Republic of Korea
| | - Su-Hyang Yoo
- National Institute of Ecology, Seocheon-gun, Republic of Korea
| | - Jongsun Park
- InfoBoss Inc., Seoul, Republic of Korea.,InfoBoss Research Center, Seoul, Republic of Korea
| | - Chungoo Park
- School of Biological Sciences and Technology, Chonnam National University, Gwangju, Republic of Korea
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Lee H, Park J, Xi H, Lee GS, Kim I, Park J, Lee W. The complete mitochondrial genome of Ricania speculum (Walker, 1851) (Hemiptera: Ricaniidae): investigation of intraspecific variations on mitochondrial genome. MITOCHONDRIAL DNA PART B-RESOURCES 2020; 5:3814-3816. [PMID: 33367111 PMCID: PMC7682737 DOI: 10.1080/23802359.2020.1839366] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
We have determined a mitochondrial genome of Ricania speculum (Walker, 1851) collected in Jeollabuk-do, Republic of Korea. The circular mitogenome of R. speculum is 15,530 bp long which is shorter than that of the previous mitogenome of R. speculum by 199 bp. It includes 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNAs. Intraspecific variation between two mitogenome of R. speculum was investigated: 171 SNPs and 18 INDELs were identified, presenting a high level of intraspecific variations on mitochondrial genome.
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Affiliation(s)
- Hyobin Lee
- Department of Plant Medicine, Gyeongsang National University, Jinju, Republic of Korea
| | - Jonghyun Park
- InfoBoss Inc., Seoul, Republic of Korea.,InfoBoss Research Center, Seoul, Republic of Korea
| | - Hong Xi
- InfoBoss Inc., Seoul, Republic of Korea.,InfoBoss Research Center, Seoul, Republic of Korea
| | - Gwan-Seok Lee
- Department of Agro-food Safety and Crop Protection, Crop Protection Division, National Institute of Agricultural Sciences, RDA, Wanju, Republic of Korea
| | - Iksoo Kim
- Department of Applied Biology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, Republic of Korea
| | - Jongsun Park
- InfoBoss Inc., Seoul, Republic of Korea.,InfoBoss Research Center, Seoul, Republic of Korea
| | - Wonhoon Lee
- Department of Plant Medicine, Gyeongsang National University, Jinju, Republic of Korea.,Institute of Agriculture and Life Science, Gyeongsang National University, Jinju, Republic of Korea
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Park J, Lee MK, Yu JH, Zhu B, Kim JH, Han KH. Complete mitochondrial genome sequence of Aspergillus flavus SRRC1009: insight of intraspecific variations on A. flavus mitochondrial genomes. Mitochondrial DNA B Resour 2020; 5:3585-3587. [PMID: 33367020 PMCID: PMC7594760 DOI: 10.1080/23802359.2020.1771226] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Accepted: 04/26/2020] [Indexed: 11/21/2022] Open
Abstract
The mitogenome of Aspergillus flavus SRRC1009 was sequenced to investigate intraspecific variations on mitochondrial genomes of A. flavus. It shows 29,202 bp with a typical configuration of Aspergillus mitogenome. Sixteen SNPs and 22 INDELs and 17 SNPs and 27 INDELs were identified against AflaGuard® and JQ355000, respectively. Phylogenetic trees present in the three A. flavus mitochondrial genomes were clustered with A. oryzae mitochondrial genome in one clade.
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Affiliation(s)
- Jongsun Park
- InfoBoss Inc., Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
| | - Mi-Kyung Lee
- Department of Bacteriology, The University of Wisconsin-Madison, Madison, WI, USA
- Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology, Jeongeup, Republic of Korea
| | - Jae-Hyuk Yu
- Department of Bacteriology, The University of Wisconsin-Madison, Madison, WI, USA
| | - Bohan Zhu
- Department of Pharmaceutical Engineering, Woosuk University, Wanju, Republic of Korea
| | - Jong-Hwa Kim
- Department of Pharmaceutical Engineering, Woosuk University, Wanju, Republic of Korea
| | - Kap-Hoon Han
- Department of Pharmaceutical Engineering, Woosuk University, Wanju, Republic of Korea
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Hong KJ, Ki W, Lee H, Park J, Lee W. The second complete mitochondrial genome of Alphitobius diaperinus Panzer, 1797 (Coleoptera: Tenebrionidae): investigation of intraspecific variations on mitochondrial genome. MITOCHONDRIAL DNA PART B-RESOURCES 2020; 5:2979-2981. [PMID: 33458023 PMCID: PMC7783036 DOI: 10.1080/23802359.2020.1797575] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
We have determined the second mitochondrial genome of Alphitobius diaperinus Panzer, 1797 collected in Gyeonggi-do, Republic of Korea. The circular mitogenome of A. diaperinus is 15,512 bp long which is slightly longer than that of the previous mitogenome of A. diaperinus. It includes 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNAs. The base composition was AT-biased (72.4%). Intraspecific variation between two mitogenome of A. diaperinus was investigated: one SNP and one INDEL were identified, presenting the low level of intraspecific variations on mitochondrial genome.
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Affiliation(s)
- Ki-Jeong Hong
- Department of Plant Medicine, Sunchon National University, Suncheon, Republic of Korea
| | - Woong Ki
- Department of Plant Medicine, Sunchon National University, Suncheon, Republic of Korea
| | - Hyobin Lee
- Department of Plant Medicine, Gyeongsang National University, Jinju, Republic of Korea
| | - Jongsun Park
- InfoBoss Inc., Seoul, Republic of Korea.,InfoBoss Research Center, Seoul, Republic of Korea
| | - Wonhoon Lee
- Department of Plant Medicine, Gyeongsang National University, Jinju, Republic of Korea.,Institute of Agriculture and Life Science, Gyeongsang National University, Jinju, Republic of Korea
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Bae Y, Park J, Lee W. The complete mitochondrial genome of Aphis gossypii Glover, 1877 (Hemiptera: Aphididae) isolated from Plantago asiatica in Korea. MITOCHONDRIAL DNA PART B-RESOURCES 2020; 5:2878-2880. [PMID: 33457986 PMCID: PMC7782666 DOI: 10.1080/23802359.2020.1792366] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
We have determined mitochondrial genome of A. gossypii isolated from Plantago asiatica in Korea. The circular mitogenome of A. gossypii is 16,045 bp including 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNAs, and a single control region of 798 bp. Its AT ratio is 83.8%. In comparison this mitogenome to Chinese and Korean A. gossypii mitogenomes, 66 single nucleotide polymorphisms (SNPs) and 176 insertions and deletions (INDELs) and 11 SNPs and 173 INDELs are identified, respectively, presenting similar level to those of Nilaparvata lugens, Laodelphax striatellus, and Spodoptera frugiperda and lower than that of Chilo suppresallis.
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Affiliation(s)
- Yoonhyuk Bae
- InfoBoss Inc., Seoul, Republic of Korea.,InfoBoss Research Center, Seoul, Republic of Korea
| | - Jongsun Park
- InfoBoss Inc., Seoul, Republic of Korea.,InfoBoss Research Center, Seoul, Republic of Korea
| | - Wonhoon Lee
- Department of Plant Medicine and Institute of Agriculture & Life Science, Gyeongsang National University, Jinju, Republic of Korea
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Park J, Kim Y, Xi H, Park J, Lee W. The complete mitochondrial genome of Rhopalosiphum nymphaeae (Linnaeus, 1761) (Hemiptera: Aphididae). Mitochondrial DNA B Resour 2020. [DOI: 10.1080/23802359.2020.1745711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
Affiliation(s)
- Jonghyun Park
- Infoboss Co., Ltd, Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
| | - Yongsung Kim
- Infoboss Co., Ltd, Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
| | - Hong Xi
- Infoboss Co., Ltd, Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
| | - Jongsun Park
- Infoboss Co., Ltd, Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
| | - Wonhoon Lee
- Department of Plant Medicine and Institute of Agriculture & Life Science, Gyeongsang National University, Jinju, Republic of Korea
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13
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Lee YD, Lee J, Kim DS, Park J, Xi H, Roh J, Kim DS, Nam SJ, Kim SK, Song JY, Park J. The complete mitochondrial genome of Hipparchia autonoe (Esper, 1783) (Lepidoptera: Nymphalidae): investigation of intraspecific variations on mitochondrial genome. Mitochondrial DNA B Resour 2020. [DOI: 10.1080/23802359.2020.1742230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
Affiliation(s)
| | - Jungmo Lee
- Infoboss Co., Ltd., Seoul, Gangnam-gu, Republic of Korea
- InfoBoss Research Center, Seoul, Gangnam-gu, Republic of Korea
| | - Do-Sung Kim
- The Institute for Conservation of Wild Species, Daejeon, Republic of Korea
| | - Jonghyun Park
- Infoboss Co., Ltd., Seoul, Gangnam-gu, Republic of Korea
- InfoBoss Research Center, Seoul, Gangnam-gu, Republic of Korea
| | - Hong Xi
- Infoboss Co., Ltd., Seoul, Gangnam-gu, Republic of Korea
- InfoBoss Research Center, Seoul, Gangnam-gu, Republic of Korea
| | - Jeehee Roh
- Department of Life Science, Chung-Ang University, Seoul, Republic of Korea
| | - Dong-Soon Kim
- Department of Plant Resources and Environment, College of Applied Life Science, Jeju National University, Jeju, Republic of Korea
| | - Sang June Nam
- Research and Business Development Institute, Agricultural Corporation, Jeju Chunji, Republic of Korea
- Department of Agricultural Biotechnology, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea
| | - Seong-Ki Kim
- Department of Life Science, Chung-Ang University, Seoul, Republic of Korea
| | - Jin-Young Song
- Research and Business Development Institute, Agricultural Corporation, Jeju Chunji, Republic of Korea
| | - Jongsun Park
- Infoboss Co., Ltd., Seoul, Gangnam-gu, Republic of Korea
- InfoBoss Research Center, Seoul, Gangnam-gu, Republic of Korea
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Seo BY, Lee GS, Park J, Xi H, Lee H, Lee J, Park J, Lee W. The complete mitochondrial genome of the fall armyworm, Spodoptera frugiperda Smith, 1797 (Lepidoptera; Noctuidae), firstly collected in Korea. Mitochondrial DNA B Resour 2019; 4:3918-3920. [PMID: 33366251 PMCID: PMC7707783 DOI: 10.1080/23802359.2019.1688119] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Accepted: 10/27/2019] [Indexed: 11/06/2022] Open
Abstract
The fall armyworm, Spodoptera frugiperda, is a serious pest in large numbers on more than 350 plant species in the world. We have determined a 15,388 bp mitogenome of S. frugiperda which includes 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNAs. The base composition was AT-biased (81.3%). Phylogenetic trees present that Korean S. frugiperda placed in basal position of S. frugiperda clade. S. frugiperda mitochondrial genome can be used for understanding recent active migration of S. frugiperda.
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Affiliation(s)
- Bo Yoon Seo
- Crop Protection Division, Department of Agro-food Safety and Crop Protection, National Institute of Agricultural Sciences, RDA, Wanju, Republic of Korea
| | - Gwan-Seok Lee
- Crop Protection Division, Department of Agro-food Safety and Crop Protection, National Institute of Agricultural Sciences, RDA, Wanju, Republic of Korea
| | - Jonghyun Park
- InfoBoss Co., Ltd, Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
| | - Hong Xi
- InfoBoss Co., Ltd, Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
| | - Hyobin Lee
- Department of Plant Medicine, Gyeongsang National University, Jinju, The Republic of Korea
| | - Jieun Lee
- Department of Plant Medicine, Gyeongsang National University, Jinju, The Republic of Korea
| | - Jongsun Park
- InfoBoss Co., Ltd, Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
| | - Wonhoon Lee
- Department of Plant Medicine, Gyeongsang National University, Jinju, The Republic of Korea
- Institute of Agriculture & Life Science, Gyeongsang National University, Jinju, The Republic of Korea
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