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Kiemel K, De Cahsan B, Paraskevopoulou S, Weithoff G, Tiedemann R. Mitochondrial genomes of the freshwater monogonont rotifer Brachionus fernandoi and of two additional B. calyciflorus sensu stricto lineages from Germany and the USA (Rotifera, Brachionidae). Mitochondrial DNA B Resour 2022; 7:646-648. [PMID: 35478860 PMCID: PMC9037189 DOI: 10.1080/23802359.2022.2060765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022] Open
Affiliation(s)
- K. Kiemel
- Unit of Evolutionary Biology/Systematic Zoology, Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany
| | - B. De Cahsan
- GLOBE Institute, University of Copenhagen, Copenhagen, Denmark
| | - S. Paraskevopoulou
- School of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
| | - G. Weithoff
- Unit of Ecology and Ecosystem Modelling, Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany
| | - R. Tiedemann
- Unit of Evolutionary Biology/Systematic Zoology, Institute for Biochemistry and Biology, University of Potsdam, Potsdam, Germany
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Zhang Y, Zhang HY, Yan JJ, Xia MN, Liu YL, Lu YM, Yan YZ, Cheng SH. Complete mitochondrial genome of Brachionus rubens from wuhu, China (Rotifera, Brachionidae). MITOCHONDRIAL DNA PART B-RESOURCES 2021; 6:1194-1196. [PMID: 33829085 PMCID: PMC8008871 DOI: 10.1080/23802359.2021.1903351] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The complete mitochondrial genome of Brachionus rubens was sequenced using primers design, clone culture, DNA extraction, LONG-PCR amplification, purification and clone sequencing. We found that it is composed of two circular chromosomes, designated mtDNA I (11,398 bp) and mtDNA II (12,820 bp). The gene content of the B. rubens mitochondrial genome was similar to that of the previously reported mitochondrial genome of B. plicatilis. It contained 22 tRNA genes, 2 rRNA genes and 12 protein-coding genes (PCGs). Four of the 12 PCGs had an incomplete stop codons, TA(cob, atp6, nd3)or T(cox3). The A + T content of B. rubens mitochondrial genome was apparently higher (mtDNA-I 70.2% and mtDNA II 70.4%) than that of the mitochondrial genome of B. plicatilis (mtDNA-I 63.9% and mtDNA-II 62.9%).
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Affiliation(s)
- Yi Zhang
- Public Research Lab of Hainan Medical University, Haikou, China.,Anhui Health College, Guichi, China
| | - Hai Ying Zhang
- Public Research Lab of Hainan Medical University, Haikou, China
| | - Jin Jin Yan
- Public Research Lab of Hainan Medical University, Haikou, China.,Wuhu Aging Wise Biotechnology Co., Ltd, Wuhu, China
| | - Meng Ning Xia
- Public Research Lab of Hainan Medical University, Haikou, China
| | - Ying Long Liu
- Public Research Lab of Hainan Medical University, Haikou, China.,State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China
| | - Yan Mei Lu
- Public Research Lab of Hainan Medical University, Haikou, China
| | - Yun Zhi Yan
- Public Research Lab of Hainan Medical University, Haikou, China
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Kim MS, Choi BS, Ogello EO, Kim HJ, Hagiwara A, Lee JS. Complete mitochondrial genome of the freshwater monogonont rotifer Brachionus angularis (Rotifera, Brachionidae). MITOCHONDRIAL DNA PART B-RESOURCES 2020; 5:3754-3755. [PMID: 33367088 PMCID: PMC7671714 DOI: 10.1080/23802359.2020.1835578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
The two complete mitochondrial genomes were sequenced from the freshwater monogonont rotifer Brachionus angularis. The mitochondrial genome sequences were 10,764 bp (mitochondrial DNA I) and 12,238 bp (mitochondrial DNA II) in size, respectively. The gene structure and its orientation of 12 protein-coding genes (PCGs) of complete mitochondrial genomes of B. angularis was identical to those shown in other marine rotifers and the freshwater rotifer Brachionus rubens, but was different from the freshwater rotifer Brachionus calyciflorus. Of 12 PCGs, one gene (ND5) had incomplete stop codon. Furthermore, the start codon for CO1, ND4L, ND5, and CO2 was GTG, while the start codon for ND3 and other PCGs was ATA and ATG, respectively. The base composition of 12 PCGs in B. angularis mitogenome showed 20.4% for A, 47.3% for T, 17.5% for C, and 14.8% for G, respectively. The mitochondrial genome A + T base composition (67.7%) of 12 PCGs was higher than G + C (32.3%), while the complete mitochondrial genome A + T base composition (66.3%) was higher than G + C (33.7%).
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Affiliation(s)
- Min-Sub Kim
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon, South Korea
| | | | | | - Hee-Jin Kim
- Institute of Integrated Science and Technology, Nagasaki University, Nagasaki, Japan
| | - Atsushi Hagiwara
- Institute of Integrated Science and Technology, Nagasaki University, Nagasaki, Japan.,Organization for Marine Science and Technology, Nagasaki University, Nagasaki, Japan
| | - Jae-Seong Lee
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon, South Korea
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Protective role of the freshwater rotifer Brachionus calyciflorus glutathione S-transferase zeta 3 recombinant protein in response to Hg and Cd. Comp Biochem Physiol B Biochem Mol Biol 2020; 243-244:110435. [DOI: 10.1016/j.cbpb.2020.110435] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2020] [Revised: 03/18/2020] [Accepted: 03/20/2020] [Indexed: 02/06/2023]
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Choi BS, Lee YH, Lee JS, Yamade T, Hagiwara A, Lee JS. Complete mitochondrial genome of the marine monogonont rotifer Proales similis (Rotifera, Proalidae). MITOCHONDRIAL DNA PART B-RESOURCES 2020. [DOI: 10.1080/23802359.2020.1730265] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
| | - Young Hwan Lee
- Department of Biological Science, College of Science, Sungkyunkwan University, Suwon, South Korea
| | - Jin-Sol Lee
- Department of Biological Science, College of Science, Sungkyunkwan University, Suwon, South Korea
| | - Takahiro Yamade
- Institute of Integrated Science and Technology, Nagasaki University, Nagasaki, Japan
| | - Atsushi Hagiwara
- Institute of Integrated Science and Technology, Nagasaki University, Nagasaki, Japan
- Graduate School of Fisheries and Environmental Sciences, Nagasaki University, Nagasaki, Japan
| | - Jae-Seong Lee
- Department of Biological Science, College of Science, Sungkyunkwan University, Suwon, South Korea
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Choi BS, Kim DH, Lee JS, Kim HJ, Hagiwara A, Lee JS. Complete mitochondrial genome of the euryhaline monogonont rotifer Brachionus paranguensis (Rotifera, Brachionidae). MITOCHONDRIAL DNA PART B-RESOURCES 2020; 5:502-503. [PMID: 33366621 PMCID: PMC7748681 DOI: 10.1080/23802359.2019.1704655] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
The two complete mitochondrial genomes were sequenced from the euryhaline monogonont rotifer Brachionus paranguensis. The mitochondrial genome sequences were 11,603 bp and 12,901 bp in size, and the gene order of 12 protein-coding genes (PCGs) were identical to those of the marine rotifer Brachionus plicatilis, but the positions of some tRNAs (e.g. tRNA-Ile, tRNA-Leu[TTA], tRNA-Phe, and tRNA-Leu[CTC]) of mitochondrial DNA I were different between B. paranguensis and B. plicatilis mitochondrial genomes. Of 12 PCGs, four genes (ND1, ATPase 6, ND5, and ND3) had incomplete stop codons. Furthermore, the start codon of ND4, ND5, and CO3 genes was ATT, while the start codon of other PCGs was ATG. The base composition of 12 PCGs in B. paranguensis mitochondrial genomes was 26.6% for A, 43.0% for T, 17.65% for C, and 12.75% for G, respectively.
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Affiliation(s)
| | - Duck-Hyun Kim
- Department of Biological Science, College of Science, Sungkyunkwan University, Suwon, South Korea
| | - Jin-Sol Lee
- Department of Biological Science, College of Science, Sungkyunkwan University, Suwon, South Korea
| | - Hee-Jin Kim
- Institute of Integrated Science and Technology, Nagasaki University, Nagasaki, Japan
| | - Atsushi Hagiwara
- Institute of Integrated Science and Technology, Nagasaki University, Nagasaki, Japan.,Organization for Marine Science and Technology, Nagasaki University, Nagasaki, Japan
| | - Jae-Seong Lee
- Department of Biological Science, College of Science, Sungkyunkwan University, Suwon, South Korea
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Choi BS, Lee YH, Lee JS, Ogello EO, Kim HJ, Hagiwara A, Lee JS. Complete mitochondrial genome of the freshwater monogonont rotifer Brachionus rubens (Rotifera, Brachionidae). MITOCHONDRIAL DNA PART B-RESOURCES 2019; 5:5-6. [PMID: 33366395 PMCID: PMC7721018 DOI: 10.1080/23802359.2019.1694853] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The two complete mitochondrial genomes were sequenced from the freshwater monogonont rotifer Brachionus rubens. The genome sequences were 12,041 bp and 13,793 bp in size, and the gene order and contents were identical to those of the freshwater rotifer B. rubens China, but were different in three tRNA-Arg, tRNA-Ile, and tRNA-Leu between both B. rubens mitochondrial genomes, while B. calyciflorus had peculiar gene order in mitochondrial DNA I. Of 12 protein-coding genes (PCGs), one gene (ND5) had incomplete stop codons. Furthermore, the start codon of ND4 and CO2 gene was ATT, while the start codon of other PCGs was ATG. The base composition of 12 PCGs in B. rubens mitogenome showed 22.5% for A, 46.5% for T, 16.3% for C, and 14.7% for G, respectively.
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Affiliation(s)
| | - Young Hwan Lee
- Department of Biological Science, College of Science, Sungkyunkwan University, Suwon, South Korea
| | - Jin-Sol Lee
- Department of Biological Science, College of Science, Sungkyunkwan University, Suwon, South Korea
| | - Erick O Ogello
- Department of Fisheries & Natural Resources, Maseno University, Kisumu, Kenya
| | - Hee-Jin Kim
- Institute of Integrated Science and Technology, Nagasaki University, Nagasaki, Japan
| | - Atsushi Hagiwara
- Institute of Integrated Science and Technology, Nagasaki University, Nagasaki, Japan.,Organization for Marine Science and Technology, Nagasaki University, Nagasaki, Japan
| | - Jae-Seong Lee
- Department of Biological Science, College of Science, Sungkyunkwan University, Suwon, South Korea
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