Resolving the phylogenetic status and taxonomic relationships of the Hangul (Cervus elaphus hanglu) in the family Cervidae

Evolutionary insights on critically endangered Kashmir red deer or hangul (Cervus hanglu hanglu) through a mitogenomic lens

Background

The Kashmir red deer or Hangul (Cervus hanglu hanglu) is the only Tarim red deer species endemic to India. With a current estimated population size of fewer than 200 individuals, this critically endangered species is confined to the greater Dachigam landscape in Jammu and Kashmir. Poaching, habitat loss and fragmentation, resource competition with livestock, and small population size are the major conservation challenges for this species.

Methods

Blood sampling was conducted from two wild Hangul individuals during radio-collaring operations at Dachigam National Park, Kashmir in 2013 and 2020, respectively. Using next-generation sequencing approach, we sequenced the 16,351 bp long mitogenome of two wild-caught Hangul individuals (1 M:1 F at ~14× and ~10× coverage, respectively) from Dachigam National Park.

Results

The annotated sequences were identical with an AT-rich composition, including 13 protein-coding genes (11,354 bp), 22 tRNA genes (1,515 bp), two ribosomal genes (2,526 bp) and a non-coding control region (917 bp) in a conserved order like other red deer species. Bayesian phylogenetic reconstruction of the red deer complex revealed two major groups: the elaphoid and the wapitoid clades. Hangul formed a distinct clade with its other subspecies C. hanglu yarkandensis and is sister to the Hungarian red deer (C. elaphus hippelaphus). Divergence time analyses suggested that the Tarim deer species group separated ~1.55 Mya from their common ancestors and Hangul diverged ~0.75 Mya from closely related C. yarkandensis, corroborating with the known paleobiogeographic events related to refugia during glaciations in the Pleistocene era. This study provides baseline information on Hangul mitogenome for further research on phylogeography and other population parameters and helps in developing suitable conservation plans for this species.

European-native vocalizing: sex and age-class acoustic variation in the Central European red deer (Cervus elaphus)

Within-population acoustic variation of European red deer Cervus elaphus follows two empirically established common rules: Rule 1: suggesting similar-pitched stag and hind calls because of potential prevalence of natural over sexual selection on call pitch; and Rule 2: predicting lower-pitched calls in adults, because larger vocal folds normally produce lower-pitched calls in mammals. We found that both rules were supported for native Pannonian red deer from Central Europe. All fundamental frequency () parameter values of hind contact calls (for the exclusion of the beginning ) were indistinguishable from those of stag rutting roars. These results agree with published data on vocalization of male and female American and Asian wapiti Cervus canadensis. Calls of adults of either sex were lower in frequency than calf calls. These results disagree with data collected from adult and young American wapiti producing same-frequency calls, probably because of a distinctive mechanism of sound production (whistling).

A review of the genus Rusa in the indo-malayan archipelago and conservation efforts

Genus Rusa, belonging to the deer family Cervidae is native to the Indo-Malaya Archipelago (IMA). However, detailed information on the Rusa genus in the IMA is limited. This review provides comprehensive information on the Rusa genus in the IMA including, threats and conservation efforts. There are four species of deer in Rusa genus, which is Sambar deer (Rusa unicolor), Javan deer (Rusa timorensis), Visayan spotted deer (Rusa alfredi) and Philippine deer (Rusa marianna). Despite their wide distribution in the South Asian and Southeast Asian regions, they are under serious threats. Some conservation efforts that are being done to protect and conserve them among others are; (1) facilities protection, (2) habitat enrichment programme, (3) Ex-situ conservation, (4) legislations, and (5) captive breeding. Conservation through genetics is also an important step in conserving these species. Recommendations for conservation of the genus are also discussed; 1. maintenance of ecosystem. 2. more effective monitoring system on the existing protected area. 3. ex-situ conservation, and 4. habitat monitoring.

Genetic evidence for allopatric speciation of the Siberian ibex Capra sibirica in India

Montane systems, formed by a series of climatic oscillations and temporal topographic metamorphoses, have broken up the contiguous distribution of widespread species and accelerated allopatric speciation. We used a partial fragment of the mitochondrial cytochrome b (cytb) gene to address speciation across the entire range of the Siberian ibex Capra sibirica. We demonstrated that the Siberian ibex is a polytypic species, plausibly formed by a combination of at least 2 species and/or 3 to 4 sub-species. Bayesian phylogeny showed that the Indian-Tajikistan (I-T) clade is adequately diverged from the other clades based on the mean intra-specific distance criterion, and warrants recognition as a distinct species. We provide pragmatic evidence for the endorsement of the I-T clade as a distinct species of Siberian ibex and urge prioritization of the conservation of this species at global and regional scales.

Old and young female voices: effects of body weight, condition and social discomfort on the vocal aging in red deer hinds (Cervus elaphus)

In female terrestrial mammals, vocal aging has only been studied in humans and pandas. In cervids displaying convergent sex dimorphism of vocal apparatus with humans, vocal aging is only investigated in males. This cross-sectional study examined acoustic variables of nasal (closed-mouth) and oral (open-mouth) contact calls of 32 farmed Iberian red deer hinds (Cervus elaphus hispanicus) aged of 4-18 years and their relationships with caller´s age, weight, social discomfort score (bites of other hinds on hind pelt) and body condition score (fat reserves). Decrease of fundamental frequency was associated with age in both oral and nasal calls, but more prominently in the nasal calls. An increase in call duration, peak frequency and power quartiles was associated with a higher degree of bites due to social aggression. Weight and body condition weakly influenced acoustic traits. We discuss that vocal aging of hinds parallels that of vocal aging in human females.