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A cytoskeletal vortex drives phage nucleus rotation during jumbo phage replication in E. coli. Cell Rep 2022; 40:111179. [PMID: 35977483 PMCID: PMC9891218 DOI: 10.1016/j.celrep.2022.111179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2021] [Revised: 03/29/2022] [Accepted: 07/19/2022] [Indexed: 02/03/2023] Open
Abstract
Nucleus-forming jumbo phages establish an intricate subcellular organization, enclosing phage genomes within a proteinaceous shell called the phage nucleus. During infection in Pseudomonas, some jumbo phages assemble a bipolar spindle of tubulin-like PhuZ filaments that positions the phage nucleus at midcell and drives its intracellular rotation. This facilitates the distribution of capsids on its surface for genome packaging. Here we show that the Escherichia coli jumbo phage Goslar assembles a phage nucleus surrounded by an array of PhuZ filaments resembling a vortex instead of a bipolar spindle. Expression of a mutant PhuZ protein strongly reduces Goslar phage nucleus rotation, demonstrating that the PhuZ cytoskeletal vortex is necessary for rotating the phage nucleus. While vortex-like cytoskeletal arrays are important in eukaryotes for cytoplasmic streaming and nucleus alignment, this work identifies a coherent assembly of filaments into a vortex-like structure driving intracellular rotation within the prokaryotic cytoplasm.
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Wu KT, Hishamunda JB, Chen DTN, DeCamp SJ, Chang YW, Fernández-Nieves A, Fraden S, Dogic Z. Transition from turbulent to coherent flows in confined three-dimensional active fluids. Science 2017; 355:355/6331/eaal1979. [PMID: 28336609 DOI: 10.1126/science.aal1979] [Citation(s) in RCA: 140] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2016] [Accepted: 02/10/2017] [Indexed: 01/04/2023]
Abstract
Transport of fluid through a pipe is essential for the operation of macroscale machines and microfluidic devices. Conventional fluids only flow in response to external pressure. We demonstrate that an active isotropic fluid, composed of microtubules and molecular motors, autonomously flows through meter-long three-dimensional channels. We establish control over the magnitude, velocity profile, and direction of the self-organized flows and correlate these to the structure of the extensile microtubule bundles. The inherently three-dimensional transition from bulk-turbulent to confined-coherent flows occurs concomitantly with a transition in the bundle orientational order near the surface and is controlled by a scale-invariant criterion related to the channel profile. The nonequilibrium transition of confined isotropic active fluids can be used to engineer self-organized soft machines.
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Affiliation(s)
- Kun-Ta Wu
- Department of Physics, Brandeis University, 415 South Street, Waltham, MA 02453, USA
| | | | - Daniel T N Chen
- Department of Physics, Brandeis University, 415 South Street, Waltham, MA 02453, USA
| | - Stephen J DeCamp
- Department of Physics, Brandeis University, 415 South Street, Waltham, MA 02453, USA
| | - Ya-Wen Chang
- School of Physics, Georgia Institute of Technology, 837 State Street, Atlanta, GA 30339, USA
| | | | - Seth Fraden
- Department of Physics, Brandeis University, 415 South Street, Waltham, MA 02453, USA.
| | - Zvonimir Dogic
- Department of Physics, Brandeis University, 415 South Street, Waltham, MA 02453, USA.
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Spatial confinement of active microtubule networks induces large-scale rotational cytoplasmic flow. Proc Natl Acad Sci U S A 2017; 114:2922-2927. [PMID: 28265076 DOI: 10.1073/pnas.1616001114] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
Collective behaviors of motile units through hydrodynamic interactions induce directed fluid flow on a larger length scale than individual units. In cells, active cytoskeletal systems composed of polar filaments and molecular motors drive fluid flow, a process known as cytoplasmic streaming. The motor-driven elongation of microtubule bundles generates turbulent-like flow in purified systems; however, it remains unclear whether and how microtubule bundles induce large-scale directed flow like the cytoplasmic streaming observed in cells. Here, we adopted Xenopus egg extracts as a model system of the cytoplasm and found that microtubule bundle elongation induces directed flow for which the length scale and timescale depend on the existence of geometrical constraints. At the lower activity of dynein, kinesins bundle and slide microtubules, organizing extensile microtubule bundles. In bulk extracts, the extensile bundles connected with each other and formed a random network, and vortex flows with a length scale comparable to the bundle length continually emerged and persisted for 1 min at multiple places. When the extracts were encapsulated in droplets, the extensile bundles pushed the droplet boundary. This pushing force initiated symmetry breaking of the randomly oriented bundle network, leading to bundles aligning into a rotating vortex structure. This vortex induced rotational cytoplasmic flows on the length scale and timescale that were 10- to 100-fold longer than the vortex flows emerging in bulk extracts. Our results suggest that microtubule systems use not only hydrodynamic interactions but also mechanical interactions to induce large-scale temporally stable cytoplasmic flow.
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Salinas-Saavedra M, Vargas AO. Cortical cytasters: a highly conserved developmental trait of Bilateria with similarities to Ctenophora. EvoDevo 2011; 2:23. [PMID: 22133482 PMCID: PMC3248832 DOI: 10.1186/2041-9139-2-23] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2011] [Accepted: 12/01/2011] [Indexed: 01/09/2023] Open
Abstract
BACKGROUND Cytasters (cytoplasmic asters) are centriole-based nucleation centers of microtubule polymerization that are observable in large numbers in the cortical cytoplasm of the egg and zygote of bilaterian organisms. In both protostome and deuterostome taxa, cytasters have been described to develop during oogenesis from vesicles of nuclear membrane that move to the cortical cytoplasm. They become associated with several cytoplasmic components, and participate in the reorganization of cortical cytoplasm after fertilization, patterning the antero-posterior and dorso-ventral body axes. PRESENTATION OF THE HYPOTHESIS The specific resemblances in the development of cytasters in both protostome and deuterostome taxa suggest that an independent evolutionary origin is unlikely. An assessment of published data confirms that cytasters are present in several protostome and deuterostome phyla, but are absent in the non-bilaterian phyla Cnidaria and Ctenophora. We hypothesize that cytasters evolved in the lineage leading to Bilateria and were already present in the most recent common ancestor shared by protostomes and deuterostomes. Thus, cytasters would be an ancient and highly conserved trait that is homologous across the different bilaterian phyla. The alternative possibility is homoplasy, that is cytasters have evolved independently in different lineages of Bilateria. TESTING THE HYPOTHESIS So far, available published information shows that appropriate observations have been made in eight different bilaterian phyla. All of them present cytasters. This is consistent with the hypothesis of homology and conservation. However, there are several important groups for which there are no currently available data. The hypothesis of homology predicts that cytasters should be present in these groups. Increasing the taxonomic sample using modern techniques uniformly will test for evolutionary patterns supporting homology, homoplasy, or secondary loss of cytasters. IMPLICATIONS OF THE HYPOTHESIS If cytasters are homologous and highly conserved across bilateria, their potential developmental and evolutionary relevance has been underestimated. The deep evolutionary origin of cytasters also becomes a legitimate topic of research. In Ctenophora, polyspermic fertilization occurs, with numerous sperm entering the egg. The centrosomes of sperm pronuclei associate with cytoplasmic components of the egg and reorganize the cortical cytoplasm, defining the oral-aboral axis. These resemblances lead us to suggest the possibility of a polyspermic ancestor in the lineage leading to Bilateria.
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Affiliation(s)
- Miguel Salinas-Saavedra
- Laboratory of Ontogeny and Phylogeny, Department of Biology, Faculty of Science, University of Chile. Las Palmeras, Ñuñoa, Casilla 653, Santiago, Chile
| | - Alexander O Vargas
- Laboratory of Ontogeny and Phylogeny, Department of Biology, Faculty of Science, University of Chile. Las Palmeras, Ñuñoa, Casilla 653, Santiago, Chile
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Marrari Y, Rouvière C, Houliston E. Complementary roles for dynein and kinesins in the Xenopus egg cortical rotation. Dev Biol 2004; 271:38-48. [PMID: 15196948 DOI: 10.1016/j.ydbio.2004.03.018] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2004] [Revised: 03/10/2004] [Accepted: 03/11/2004] [Indexed: 01/01/2023]
Abstract
Aligned vegetal subcortical microtubules in fertilized Xenopus eggs mediate the "cortical rotation", a translocation of the vegetal cortex and of dorsalizing factors toward the egg equator. Kinesin-related protein (KRP) function is essential for the cortical rotation, and dynein has been implicated indirectly; however, the role of neither microtubule motor protein family is understood. We examined the consequence of inhibiting dynein--dynactin-based transport by microinjection of excess dynamitin beneath the vegetal egg surface. Dynamitin introduced before the cortical rotation prevented formation of the subcortical array, blocking microtubule incorporation from deeper regions. In contrast, dynamitin injected after the microtubule array was fully established did not block cortical translocation, unlike inhibitory-KRP antibodies. During an early phase of cortical rotation, when microtubules showed a distinctive wavy organization, dynamitin disrupted microtubule alignment and perturbed cortical movement. These findings indicate that dynein is required for formation and early maintenance of the vegetal microtubule array, while KRPs are largely responsible for displacing the cortex once the microtubule tracks are established. Consistent with this model for the cortical rotation, photobleach analysis revealed both microtubules that translocated with the vegetal cytoplasm relative to the cortex, and ones that moved with the cortex relative to the cytoplasm.
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Affiliation(s)
- Yannick Marrari
- Unité de Biologie du Développement, UMR 7009 CNRS/Université Paris VI, Observatoire Océanologique, 06230 Villefranche sur mer, France
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Affiliation(s)
- M Terasaki
- Laboratory of Neurobiology, National Institute for Neurological Diseases and Stroke, National Institutes of Health, Bethesda, Maryland 20892
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Affiliation(s)
- E Houliston
- Department of Zoology, University of Toronto, Ontario, Canada
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Sakai M. Heat-Induced Reversal of Dorsal-Ventral Polarity in Xenopus Eggs. (Xenopus eggs/heat-treatment/D-V axis). Dev Growth Differ 1990. [DOI: 10.1111/j.1440-169x.1990.00497.x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Schroeder TE. Fourth cleavage of sea urchin blastomeres: microtubule patterns and myosin localization in equal and unequal cell divisions. Dev Biol 1987; 124:9-22. [PMID: 3311851 DOI: 10.1016/0012-1606(87)90454-4] [Citation(s) in RCA: 66] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
This study traces the morphological appearance, organization, and disappearance of the cytoskeletal machinery for cell division during the fourth cell cycle of isolated sea urchin blastomeres by immunolocalization of tubulin and myosin. Mesomere-mesomeres (which divide equally) and macromere-micromeres (which divide unequally) are compared in terms of their asters (both mitotic and so-called interphase asters), spindle apparatus, and contractile ring. The results suggest that the distinctive nuclear positioning of these blastomeres is established in late interphase, that centrosomal alignment occurs in prophase, that all of the dominant astral configurations in the cell cycle belong to a single cycle of assembly-disassembly, that a second interphase-specific cycle of assembly-disassembly is confined to a diffuse cytoplasmic reticulum, and that contractile ring myosin concentrates and disperses in precise coincidence with the beginning and end of cleavage furrowing.
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Affiliation(s)
- T E Schroeder
- Friday Harbor Laboratories, University of Washington 98250
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Sardet C, Chang P. The egg cortex: from maturation through fertilization. CELL DIFFERENTIATION 1987; 21:1-19. [PMID: 3301005 DOI: 10.1016/0045-6039(87)90443-x] [Citation(s) in RCA: 31] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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Vincent JP, Scharf SR, Gerhart JC. Subcortical rotation in Xenopus eggs: a preliminary study of its mechanochemical basis. CELL MOTILITY AND THE CYTOSKELETON 1987; 8:143-54. [PMID: 3690686 DOI: 10.1002/cm.970080206] [Citation(s) in RCA: 54] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
The amphibian egg undergoes a 30 degree rotation of its subcortical contents relative to its surface during the first cell cycle, a displacement of 350 micron in 50 min. This is directly visualized by following the movement of an array of Nile blue (a subcortical stain) spots applied to the egg periphery (Vincent, Oster, and Gerhart: Dev Bio 113:484-500, '86). We have investigated the mechanochemical basis of this unusual cell motility. Subcortical rotation depends on microtubule integrity during its entire course and is insensitive to inhibitors of microfilament assembly. It does not depend on newly synthesized proteins for its operation or timing, and it does not involve calcium-dependent processes. Finally, we show that vegetal fragments of the egg can complete rotation on their own, indicating that mechanochemical components can operate locally in this hemisphere.
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Affiliation(s)
- J P Vincent
- Department of Molecular Biology, University of California, Berkeley
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Vincent JP, Oster GF, Gerhart JC. Kinematics of gray crescent formation in Xenopus eggs: the displacement of subcortical cytoplasm relative to the egg surface. Dev Biol 1986; 113:484-500. [PMID: 3949075 DOI: 10.1016/0012-1606(86)90184-3] [Citation(s) in RCA: 183] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Specification of the amphibian dorso-ventral axis takes place in the period between fertilization and first cleavage when the gray crescent forms. In the course of gray crescent formation, the egg reorganizes its periphery by a movement for which two descriptions have been given. According to the "rotation hypothesis," which was originated and supported for Rana eggs, the entire egg cortex rotates by an arc of 30 degrees relative to the stationary subcortical cytoplasm, leaving the crescent as a zone of altered coloration. The "contraction hypothesis" on the other hand, which was proposed for Xenopus and Rana eggs, asserts that there is a cortical contraction focused at the sperm entry point that leads to stretching of the opposite equatorial zone at which the crescent appears. We have reinvestigated the case of Xenopus eggs by imprinting one kind of fluorescent dye pattern (Nile blue) onto the subcortical cytoplasm and another kind (fluorescein-lectin) onto the egg surface. When the egg surface is held fixed by embedding the egg in gelatin, two major movements of the subcortical cytoplasm are observable. First, starting at time 0.3 (30% of the time between fertilization and first cleavage), the animal hemisphere subcortical cytoplasm converges toward a point, while the vegetal hemisphere is quiescent. This convergence continues with decreasing strength until approximately 0.8 of the first cell cycle. Second, at 0.45, an overall rotation of the animal and vegetal subcortical cytoplasm commences, superimposed on the animal hemisphere convergence. By 0.8-0.9 the rotation is complete, having accomplished a 30 degrees displacement of the subcortical cytoplasm relative to the surface. This rotation reliably locates the future dorsal midline of the embryo at the meridian on which the displacement of the subcortical cytoplasm is greatest in a vegetal direction. In normal unembedded eggs, when the egg surface is free to move, it rotates 30 degrees relative to the subcortical cytoplasm, which remains stationary in a position of gravitational equilibrium. Although both a convergence and rotation occur in the Xenopus egg, we give evidence that the rotation, not the convergence (perhaps equated with contraction), specifies the embryo's prospective axis. Even though the Xenopus egg does not form a classical gray crescent, due to its particular pigment distribution, the reorganization process which specifies the future embryonic axis resembles that of the Rana egg.
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Harris PJ. Chapter 14 Cytology and Immunocytochemistry. Methods Cell Biol 1986. [DOI: 10.1016/s0091-679x(08)60352-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2023]
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Bajer AS, Molè-Bajer J. Reorganization of microtubules in endosperm cells and cell fragments of the higher plant Haemanthus in vivo. J Biophys Biochem Cytol 1986; 102:263-81. [PMID: 3941154 PMCID: PMC2114031 DOI: 10.1083/jcb.102.1.263] [Citation(s) in RCA: 101] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
The reorganization of the microtubular meshwork was studied in intact Haemanthus endosperm cells and cell fragments (cytoplasts). This higher plant tissue is devoid of a known microtubule organizating organelle. Observations on living cells were correlated with microtubule arrangements visualized with the immunogold method. In small fragments, reorganization did not proceed. In medium and large sized fragments, microtubular converging centers formed first. Then these converging centers reorganized into either closed bushy microtubular spiral or chromosome-free cytoplasmic spindles/phragmoplasts. Therefore, the final shape of organized microtubular structures, including spindle shaped, was determined by the initial size of the cell fragments and could be achieved without chromosomes or centrioles. Converging centers elongate due to the formation of additional structures resembling microtubular fir trees. These structures were observed at the pole of the microtubular converging center in anucleate fragments, accessory phragmoplasts in nucleated cells, and in the polar region of the mitotic spindle during anaphase. Therefore, during anaphase pronounced assembly of new microtubules occurs at the polar region of acentriolar spindles. Moreover, statistical analysis demonstrated that during the first two-thirds of anaphase, when chromosomes move with an approximately constant speed, kinetochore fibers shorten, while the length of the kinetochore fiber complex remains constant due to the simultaneous elongation of their integral parts (microtubular fir trees). The half-spindle shortens only during the last one-third of anaphase. These data contradict the presently prevailing view that chromosome-to-pole movements in acentriolar spindles of higher plants are concurrent with the shortening of the half-spindle, the self-reorganizing property of higher plant microtubules (tubulin) in vivo. It may be specific for cells without centrosomes and may be superimposed also on other microtubule-related processes.
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