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Tekle YI, Wang F, Heidari A, Stewart AJ. Differential gene expression analysis and cytological evidence reveal a sexual stage of an amoeba with multiparental cellular and nuclear fusion. PLoS One 2020; 15:e0235725. [PMID: 33147262 PMCID: PMC7641356 DOI: 10.1371/journal.pone.0235725] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Accepted: 10/06/2020] [Indexed: 12/20/2022] Open
Abstract
Sex is a hallmark of eukaryotes but its evolution in microbial eukaryotes is poorly elucidated. Recent genomic studies revealed microbial eukaryotes possess a genetic toolkit necessary for sexual reproduction. However, the mechanism of sexual development in a majority of microbial eukaryotes including amoebozoans is poorly characterized. The major hurdle in studying sex in microbial eukaryotes is a lack of observational evidence, primarily due to its cryptic nature. In this study, we used a tractable fusing amoeba, Cochliopodium, to investigate sexual development using stage-specific Differential Gene Expression (DGE) and cytological analyses. Both DGE and cytological results showed that most of the meiosis and sex-related genes are upregulated in Cochliopodium undergoing fusion in laboratory culture. Relative gene ontology (GO) category representations in unfused and fused cells revealed a functional skew of the fused transcriptome toward DNA metabolism, nucleus and ligases that are suggestive of a commitment to sexual development. However, the GO categories of unfused cells were dominated by metabolic pathways and other processes indicative of a vegetative phase. Our study provides strong evidence that the fused cells represent a sexual stage in Cochliopodium. Our findings have further implications in understanding the evolution and mechanism of inheritance involving multiparents in other eukaryotes with a similar reproductive strategy.
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Affiliation(s)
- Yonas I. Tekle
- Department of Biology, Spelman College, Atlanta, Georgia, United States of America
- * E-mail:
| | - Fang Wang
- Department of Biology, Spelman College, Atlanta, Georgia, United States of America
| | - Alireza Heidari
- Department of Biology, Spelman College, Atlanta, Georgia, United States of America
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Hofstatter PG, Brown MW, Lahr DJG. Comparative Genomics Supports Sex and Meiosis in Diverse Amoebozoa. Genome Biol Evol 2018; 10:3118-3128. [PMID: 30380054 PMCID: PMC6263441 DOI: 10.1093/gbe/evy241] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/30/2018] [Indexed: 12/30/2022] Open
Abstract
Sex and reproduction are often treated as a single phenomenon in animals and plants, as in these organisms reproduction implies mixis and meiosis. In contrast, sex and reproduction are independent biological phenomena that may or may not be linked in the majority of other eukaryotes. Current evidence supports a eukaryotic ancestor bearing a mating type system and meiosis, which is a process exclusive to eukaryotes. Even though sex is ancestral, the literature regarding life cycles of amoeboid lineages depicts them as asexual organisms. Why would loss of sex be common in amoebae, if it is rarely lost, if ever, in plants and animals, as well as in fungi? One way to approach the question of meiosis in the "asexuals" is to evaluate the patterns of occurrence of genes for the proteins involved in syngamy and meiosis. We have applied a comparative genomic approach to study the occurrence of the machinery for plasmogamy, karyogamy, and meiosis in Amoebozoa, a major amoeboid supergroup. Our results support a putative occurrence of syngamy and meiotic processes in all major amoebozoan lineages. We conclude that most amoebozoans may perform mixis, recombination, and ploidy reduction through canonical meiotic processes. The present evidence indicates the possibility of sexual cycles in many lineages traditionally held as asexual.
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Affiliation(s)
- Paulo G Hofstatter
- Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo, Brazil
| | - Matthew W Brown
- Department of Biological Sciences, Mississippi State University
| | - Daniel J G Lahr
- Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo, Brazil
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Affiliation(s)
- O'Neil Ray Collins
- Department of Botany, University of California, Berkeley, California 94720
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Haskins EF. The Occurrence of Binary Plasmotomy in the Protoplasmodium of the White-Spored Echinostelium Minutum. Mycologia 2018. [DOI: 10.1080/00275514.1978.12020218] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Edward F. Haskins
- Department of Botany, University of Washington, Seattle, Washington 98195
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Gaither T, Collins OR. Synaptonemal Complexes in an Apomictic Line of Stemonitis Flavogenita (Myxomycetes, Stemonitales). Mycologia 2018. [DOI: 10.1080/00275514.1984.12023961] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Thomas Gaither
- Department of Biology, Slippery Rock University, Slippery Rock, Pennsylvania 16057
| | - O'Neil Ray Collins
- Department of Botany, University of California, Berkeley, California 94720
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Affiliation(s)
- Ching-Yuan Hung
- Department of Botany, University of North Carolina, Chapel Hill, North Carolina 27514
| | - L. S. Olive
- Department of Botany, University of North Carolina, Chapel Hill, North Carolina 27514
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Dykstra MJ. The Possible Phylogenetic Significance of Mitochondrial Configurations in the Acrasid Cellular Slime Molds with Reference to Members of the Eumycetozoa and Fungi. Mycologia 2018. [DOI: 10.1080/00275514.1977.12020096] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Michael J. Dykstra
- Department of Microbiology and Cell Science, University of Florida, Gainesville, Florida 32611
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9
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LIE THORE, LAANE MORTENM. Reconstruction analyses of synaptonemal complexes in haploid and diploid pachytene nuclei of Physarum polycephalum (Myxomycetes). Hereditas 2008. [DOI: 10.1111/j.1601-5223.1982.tb00043.x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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Haskins EF, McGuinness MD. Ultrastructure of the Flagellar Apparatus of the Slime Mold Semimorula Liquescens. Mycologia 1988. [DOI: 10.1080/00275514.1988.12025593] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- E. F. Haskins
- Department of Botany, University of Washington, Seattle, Washington 98195
| | - M. D. McGuinness
- Department of Botany, University of Washington, Seattle, Washington 98195
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Moens PB, Heyting C, Dietrich AJ, van Raamsdonk W, Chen Q. Synaptonemal complex antigen location and conservation. J Cell Biol 1987; 105:93-103. [PMID: 2440900 PMCID: PMC2114919 DOI: 10.1083/jcb.105.1.93] [Citation(s) in RCA: 98] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
The axial cores of chromosomes in the meiotic prophase nuclei of most sexually reproducing organisms play a pivotal role in the arrangement of chromatin, in the synapsis of homologous chromosomes, in the process of genetic recombination, and in the disjunction of chromosomes. We report an immunogold analysis of the axial cores and the synaptonemal complexes (SC) using two mouse monoclonal antibodies raised against isolated rat SCs. In Western blots of purified SCs, antibody II52F10 recognizes a 30- and a 33-kD peptide (Heyting, C., P. B. Moens, W. van Raamsdonk, A. J. J. Dietrich, A. C. G. Vink, and E. J. W. Redeker, 1987, Eur. J. Cell Biol., 43: 148-154). In spreads of rat spermatocyte nuclei it produces gold grains over the cores of autosomal and sex chromosomes. The cores label lightly during the chromosome pairing stage (zygotene) of early meiotic prophase and they become more intensely labeled when they are parallel aligned as the lateral elements of the SC during pachytene (55 grains/micron SC). Statistical analysis of electronically recorded gold grain positions shows that the two means of the bimodal gold grain distribution coincide with the centers of the lateral elements. At diplotene, when the cores separate, the antigen is still detected along the length of the core and the enlarged ends are heavily labeled. Shadow-cast SC preparations show that recombination nodules are not labeled. The continued presence suggests that the antigens serve a continuing function in the cores, such as chromatin binding, and/or structural integrity. Antibody III15B8, which does not recognize the 30- and 33-kD peptides, produces gold grains predominantly between the lateral elements. The grain distribution is bimodal with the mean of each peak just inside the pairing face of the lateral element. The antigen is present where and while the cores of the homologous chromosomes are paired. From the location and the timing, it is assumed that the antigen recognized by III15B8 functions in chromosome pairing at meiotic prophase. The two anti-rat SC antibodies label rat and mouse SCs but not rabbit or dog SCs. A positive control using human CREST (calcinosis, Raynaud's phenomenon, esophageal dysmotility, sclerodactyly, telangiectasia) anti-centromere serum gives equivalent labeling of SC centromeres in the rat, mouse, rabbit, and dog. It is concluded that the SC antigens recognized by II52F10 and III15B8 are not widely conserved. The two antibodies do not bind to cellular or nuclear components of somatic cells.(ABSTRACT TRUNCATED AT 400 WORDS)
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Haskins EF, McGuinness MD. Comparative Ultrastructural Observations of Spore Wall Structure in Six Species of Echinostelium and Three Species of Eumycetozoa. Mycologia 1986. [DOI: 10.1080/00275514.1986.12025297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- E. F. Haskins
- Department of Botany, University of Washington, Seattle, Washington 98195
| | - M. D. McGuinness
- Department of Botany, University of Washington, Seattle, Washington 98195
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McGuinness MD, Haskins EF. Genetic Analysis of the Reproductive System of the True Slime Mold Comatricha Lurida. Mycologia 1985. [DOI: 10.1080/00275514.1985.12025150] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- M. D. McGuinness
- Department of Botany, University of Washington, Seattle, Washington 98195
| | - E. F. Haskins
- Department of Botany, University of Washington, Seattle, Washington 98195
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Sherman JD, Mims CW. Ultrastructural Evidence for Meiosis in a Nonheterothallic Isolate of the Myxomycete Didymium Iridis. Mycologia 1985. [DOI: 10.1080/00275514.1985.12025105] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- J. D. Sherman
- Department of Biology, Stephen F. Austin State University, Nacogdoches Texas 75962
| | - C. W. Mims
- Department of Biology, Stephen F. Austin State University, Nacogdoches Texas 75962
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Abstract
There is evidence supporting a concept of polyploid evolution in a number of groups of fungi. These typically have dominant diploid phases in their life-histories. There are a number of reports of suspected polyploidy in other fungi, but these should be considered speculative at this time.
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Haskins EF. High voltage electron microscopical analysis of chromosomal number in the slime mold Echinostelium minutum de Bary. Chromosoma 1976; 56:95-100. [PMID: 987896 DOI: 10.1007/bf00293109] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Utilizing serial thick sectioning techniques in combination with high voltage electron microscopy and stereopair analysis a count of 124 chromosomes was determined for a metaphasic plasmodial nucleus of the slime mold E. minutum.
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Gray WD. The myxomycetes--some problems and unanswered questions. CRC CRITICAL REVIEWS IN MICROBIOLOGY 1976; 4:225-48. [PMID: 767055 DOI: 10.3109/10408417609106943] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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Heywood P, Magee PT. Meiosis in protists. Some structural and physiological aspects of meiosis in algae, fungi, and protozoa. BACTERIOLOGICAL REVIEWS 1976; 40:190-240. [PMID: 773364 PMCID: PMC413949 DOI: 10.1128/br.40.1.190-240.1976] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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Blackwell M. A study of sporophore development in the myxomycete Protophysarum phloiogenum. Arch Microbiol 1974; 99:331-44. [PMID: 4372966 DOI: 10.1007/bf00696247] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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