Assembly rules and competition in desert rodents

Diverse interactions and ecosystem engineering can stabilize community assembly

The complexity of an ecological community can be distilled into a network, where diverse interactions connect species in a web of dependencies. Species interact directly with each other and indirectly through environmental effects, however to our knowledge the role of these ecosystem engineers has not been considered in ecological network models. Here we explore the dynamics of ecosystem assembly, where species colonization and extinction depends on the constraints imposed by trophic, service, and engineering dependencies. We show that our assembly model reproduces many key features of ecological systems, such as the role of generalists during assembly, realistic maximum trophic levels, and increased nestedness with mutualistic interactions. We find that ecosystem engineering has large and nonlinear effects on extinction rates. While small numbers of engineers reduce stability by increasing primary extinctions, larger numbers of engineers increase stability by reducing primary extinctions and extinction cascade magnitude. Our results suggest that ecological engineers may enhance community diversity while increasing persistence by facilitating colonization and limiting competitive exclusion.

The dynamics of ecological communities depends on interactions between species as well as those between species and their environment, however the effects of the latter are poorly understood. Here, Yeakel et al. reveal how species that modify their environment (ecosystem engineers) impact community dynamics and the risk of extinction.

Climatic constraints and the distribution of Patagonian mice

We generated potential distribution models for 14 sigmodontine rodent species that inhabit the Andean–Patagonian forest region and adjacent areas, and retrieved the main climatic variables responsible for these models. Our main objective was to compare these climatic variables and the distribution patterns generated for each species, and explore the effects of the physical environment in shaping the composition of rodent communities in the area. We retrieved a total of 1,215 records of species presence from 580 sites. Maxent was used to generate potential distribution models for the 14 rodent species studied. We used a total of 20 variables obtained from the WorldClim database, including elevation and 19 bioclimatic variables, in addition to normalized difference vegetation index (NDVI) and enhanced vegetation index (EVI). Our results showed a clear discrimination between two groups of rodents, one concentrated in the western part of our study area, with more humid climate and a rugged mountainous and discontinuous habitat, and another inhabiting the eastern, drier part of our study area, which appears to be more uniform in habitat characteristics. These groups showed a mosaic of phylogenetically non-related species from different tribes, that probably arrived or expanded into Patagonia during the last millennia. The overlap of all models showed the forest-steppe ecotone east of Nahuel Huapi Lake and south to −43° latitude as the area with the highest species richness (8–11 species). All species showed a high correspondence with temperature and precipitation that define patterns at a landscape scale, with little to very little information contained in the typical vegetation variables that would define local conditions.

En este trabajo generamos modelos de distribución potencial para cada especie de roedor sigmodontino que habita la región de los bosques andino-patagónicos y áreas adyacentes, identificando las principales variables climáticas que influyen en dichas distribuciones. Nuestro principal objetivo fue comparar las variables climáticas y los patrones de distribución generados para cada especie, y explorar los efectos del entorno físico en la composición de los ensambles de especies. Recopilamos un total de 1215 registros de presencia de especies de 580 sitios. Se utilizó MaxEnt para generar los modelos de distribución potencial de las 14 especies de roedores estudiadas, con 20 variables obtenidas de la base de datos WorldClim, incluida la elevación, 19 variables bioclimáticas, además del NDVI y EVI. Nuestros resultados muestran una clara discriminación entre dos grupos de roedores, uno concentrado en el área occidental, con un clima más húmedo y montañoso, y otro que habita en el área más seca del este. Curiosamente, estos grupos muestran un mosaico de especies, filogenéticamente no relacionadas y de diferentes tribus, que probablemente llegaron o se expandieron en la Patagonia durante los últimos milenios. La superposición de todos los modelos muestra el ecotono bosque-estepa, al este del lago Nahuel Huapi y hacia el sur hasta los -43°, como la zona más rica en especies (8 a 11 especies). Todas las especies muestran una alta correspondencia con las variables ambientales (temperatura y precipitación) que definen patrones a escala del paisaje, con muy poca información contenida en las variables típicas de la vegetación que definirían las condiciones locales.

Divergent behavior amid convergent evolution: A case of four desert rodents learning to respond to known and novel vipers

Desert communities world-wide are used as natural laboratories for the study of convergent evolution, yet inferences drawn from such studies are necessarily indirect. Here, we brought desert organisms together (rodents and vipers) from two deserts (Mojave and Negev). Both predators and prey in the Mojave have adaptations that give them competitive advantage compared to their middle-eastern counterparts. Heteromyid rodents of the Mojave, kangaroo rats and pocket mice, have fur-lined cheek pouches that allow them to carry larger loads of seeds under predation risk compared to gerbilline rodents of the Negev Deserts. Sidewinder rattlesnakes have heat-sensing pits, allowing them to hunt better on moonless nights when their Negev sidewinding counterpart, the Saharan horned vipers, are visually impaired. In behavioral-assays, we used giving-up density (GUD) to gauge how each species of rodent perceived risk posed by known and novel snakes. We repeated this for the same set of rodents at first encounter and again two months later following intensive "natural" exposure to both snake species. Pre-exposure, all rodents identified their evolutionarily familiar snake as a greater risk than the novel one. However, post-exposure all identified the heat-sensing sidewinder rattlesnake as a greater risk. The heteromyids were more likely to avoid encounters with, and discern the behavioral difference among, snakes than their gerbilline counterparts.

Local and regional processes in community assembly

Controversy on whether local (deterministic) or regional (stochastic) factors control the structure of communities persists after decades of research. The main reason for why it has not been resolved may lie in the nature of evidence which largely comes from realized natural communities. In such communities assembly history leaves a mark that may support either set of factors. To avoid the confounding effects of assembly history we controlled for these effects experimentally. We created a null community by mixing 17 rock pool communities. We then divided the null community into replicates and distributed among treatments representing a gradient of factors from local to regional. We hypothesized that if deterministic factors dominate the assembly of communities, community structures should show a corresponding gradient from being very similar and convergent to dissimilar and divergent. In contrast, if local processes are predominantly stochastic in nature, such a gradient of community configurations should emerge even in the homogeneous setting. Our results appear to partially support both hypotheses and thus suggest that both deterministic and stochastic processes contribute to the assembly of communities. Furthermore, we found that to satisfactorily explain patterns observed in natural communities environmental heterogeneity and regional processes must also be considered. In conclusion, although deterministic mechanisms seem to be important in the assembly of communities, in natural systems their signal may be diluted and masked whenever other factors exert meaningful influence. Such factors increase the number of possible paths to the point that the number of paths equals the number of communities in a metacommunity.

The roles of competition and environmental heterogeneity in the maintenance of behavioral variation and covariation

Many models of selection predict that populations will lose variation in traits that affect fitness. Nonetheless, phenotypic variation is commonly observed in natural populations. We tested the influences of competition and spatial heterogeneity on behavioral variation within and among populations of Merriam's kangaroo rats (Dipodomys merriami) and tested for the differential expression of trait correlations. We found that populations of D. merriami exhibited more aggression at sites with more competition. Contrary to theoretical predictions and empirical results in other systems, the sites with the greatest spatial heterogeneity and highest levels of competition did not exhibit the most behavioral variation among individuals. However, the greatest within-individual behavioral variability in boldness (response to cues of predator presence) was exhibited where spatial heterogeneity was highest. Aggression and boldness of D. merriami were highly repeatable, that is, individuals behaved in a consistent manner over time, and the two behaviors were also highly correlated. Interestingly, the strength of this correlation was greatest where the competitive community was least diverse. These findings add to increasing evidence that natural populations of animals exhibit patterns of behavioral covariance, or personality structure, and suggest that competitive variation may act to erode personality structure.

Inter- and intra-specific patterns of density dependence and population size variability in Salmoniformes

Population dynamics are typically affected by a combination of density-independent and density-dependent factors, the latter of which have been conceptually and theoretically linked with how variable population sizes are over time-which in turn has been tied to how prone populations are to extinction. To address evidence for the occurrence of density dependence and its relationship with population size variability (pv), we quantified each of these for 126 populations of 8 species of Salmoniformes. Using random-effects models, we partitioned variation in the strength of density dependence and the magnitude of pv between and within species and estimated the correlation of density dependence and population size variability at both the between- and within-species levels. We found that variation in the strength of density dependence was predominately within species (I(2) = 0.12 [corrected] variation in population size variability was distributed both between and within species (I(2) = 0.40). Contrary to theoretical and conceptual expectations, the strength of density dependence and the magnitude of population size variability were positively correlated at the between species level (r = 0.90), although this estimate had 95 % credibility intervals (Bayesian analogues to confidence intervals) that overlapped zero. The within-species correlation between density dependence and population size variability was not distinguishable from zero. Given that density dependence for Salmoniformes was highly variable within species, we next determined the joint effects of intrinsic (density-dependent) and extrinsic (density-independent) factors on the population dynamics of a threatened salmonid, the Lahontan cutthroat trout (Oncorhynchus clarkii henshawi). We found that density-dependent and -independent factors additively contributed to population dynamics. This finding suggests that the observed within-species variability in density dependence might be attributable to local differences in the strength of density-independent factors.

Co-occurrence of small mammals in a tropical dry deciduous forest: comparisons of communities and individual species in Colima, Mexico

Species co-occurrence is an important ecological research area. Mark-and-recapture studies of mammals allow identification of coexisting species, a necessary step in determining mechanisms enabling habitat sharing. Using data from five 1-ha grids in January 2004 in tropical dry deciduous forest of coastal Colima, Mexico, we detected significantly more interspecific overlap than expected between seven species pairs. Oryzomys couesi shared more stations than expected with Sigmodon mascotensis, Baiomys musculus and Peromyscus perfulvus. Baiomys musculus was associated positively with S. mascotensis and Reithrodontomys fulvescens. Heteromys pictus shared fewer stations than expected with O. couesi and S. mascotensis. For species collectively, there was non-random community structuring, with two grids displaying more species aggregation than expected. While two grids had non-random co-occurrence patterns, three grids did not differ from random, which differs from that reported for mammalian taxa on average. Other small-mammal studies have documented species segregation, while this study detected more positive than negative associations. Similarities in preference and habitat use (or diet) are likely explanations for interspecific overlap patterns at stations and co-occurrence patterns among grids. Simultaneously evaluating associations of species pairs and all species on a grid collectively is novel methodology as applied to mammals, adding to understanding of species co-occurrence.

Inferring ecological processes from taxonomic, phylogenetic and functional trait β-diversity

Understanding the influences of dispersal limitation and environmental filtering on the structure of ecological communities is a major challenge in ecology. Insight may be gained by combining phylogenetic, functional and taxonomic data to characterize spatial turnover in community structure (β-diversity). We develop a framework that allows rigorous inference of the strengths of dispersal limitation and environmental filtering by combining these three types of β-diversity. Our framework provides model-generated expectations for patterns of taxonomic, phylogenetic and functional β-diversity across biologically relevant combinations of dispersal limitation and environmental filtering. After developing the framework we compared the model-generated expectations to the commonly used "intuitive" expectation that the variance explained by the environment or by space will, respectively, increase monotonically with the strength of environmental filtering or dispersal limitation. The model-generated expectations strongly departed from these intuitive expectations: the variance explained by the environment or by space was often a unimodal function of the strength of environmental filtering or dispersal limitation, respectively. Therefore, although it is commonly done in the literature, one cannot assume that the strength of an underlying process is a monotonic function of explained variance. To infer the strength of underlying processes, one must instead compare explained variances to model-generated expectations. Our framework provides these expectations. We show that by combining the three types of β-diversity with model-generated expectations our framework is able to provide rigorous inferences of the relative and absolute strengths of dispersal limitation and environmental filtering. Phylogenetic, functional and taxonomic β-diversity can therefore be used simultaneously to infer processes by comparing their empirical patterns to the expectations generated by frameworks similar to the one developed here.

Variação temporal e espacial na composição de guildas alimentares da ictiofauna em lagoas marginais do Rio Cuiabá, Pantanal Norte

O presente trabalho teve como objetivo avaliar a variação espacial e temporal das guildas alimentares das comunidades de peixes em 10 lagoas marginais do Rio Cuiabá no Pantanal. As lagoas foram amostradas em três períodos do ciclo hidrológico (início e final da seca e início da enchente de 2005). As guildas alimentares foram determinadas através da análise do conteúdo estomacal das espécies mais abundantes da comunidade. Foram analisadas 37 espécies pertencentes a oito guildas alimentares (insetívora, herbívora, onívora, zooplanctívora, planctívora, detritívora, bentívora e iliófaga), as quais variaram espacial e temporalmente. Observamos uma mudança na composição das guildas tróficas entre os períodos e locais analisados, porém o número de guildas não variou espaço-temporalmente. Nossos resultados sugerem que as mudanças espaciais e temporais na composição das guildas podem estar relacionadas com diversos fatores, como as alterações na composição da comunidade onde novas espécies podem compor as diferentes guildas; a exploração de recursos mais abundantes em determinadas épocas do ano favorecendo a presença de algumas guildas somente em alguns períodos.

Organization of Plethodon salamander communities: guild-based community assembly

A long-standing goal in evolutionary ecology is to determine whether the organization of communities is reflective of underlying deterministic processes. In this study, I examined patterns of species co-occurrence among eastern Plethodon salamanders and determined whether they were consistent with predictions from a guild model of competition-based community assembly. Using a database of 45 species and 4540 geographic sites, I found that patterns of co-occurrence were significantly nonrandom at both a regional and continental scale, and species of different size guilds were distributed more evenly in sites than was expected by chance. Sites with the highest species richness had consistent patterns of community composition, and with few exceptions, the same five species were present at all sites. Taken together, these results imply that larger Plethodon communities are assembled from simpler communities in a manner consistent with what is predicted through competitive mechanisms and suggest that stable species combinations are possible to achieve at various levels of species richness. These results also provide strong evidence consistent with the hypothesis that competitive-based community assembly is a general phenomenon in Plethodon and that interspecific competition is prevalent among the eastern species of this group.

A genetic similarity rule determines arthropod community structure

We define a genetic similarity rule that predicts how genetic variation in a dominant plant affects the structure of an arthropod community. This rule applies to hybridizing cottonwood species where plant genetic variation determines plant-animal interactions and structures a dependent community of leaf-modifying arthropods. Because the associated arthropod community is expected to respond to important plant traits, we also tested whether plant chemical composition is one potential intermediate link between plant genes and arthropod community composition. Two lines of evidence support our genetic similarity rule. First, in a common garden experiment we found that trees with similar genetic compositions had similar chemical compositions and similar arthropod compositions. Second, in a wild population, we found a similar relationship between genetic similarity in cottonwoods and the dependent arthropod community. Field data demonstrate that the relationship between genes and arthropods was also significant when the hybrids were analysed alone, i.e. the pattern is not dependent upon the inclusion of both parental species. Because plant-animal interactions and natural hybridization are common to diverse plant taxa, we suggest that a genetic similarity rule is potentially applicable, and may be extended, to other systems and ecological processes. For example, plants with similar genetic compositions may exhibit similar litter decomposition rates. A corollary to this genetic similarity rule predicts that in systems with low plant genetic variability, the environment will be a stronger factor structuring the dependent community. Our findings argue that the genetic composition of a dominant plant can structure higher order ecological processes, thus placing community and ecosystem ecology within a genetic and evolutionary framework. A genetic similarity rule also has important conservation implications because the loss of genetic diversity in one species, especially dominant or keystone species that define many communities, may cascade to negatively affect the rest of the dependent community.

Determinism in a Transient Assemblage: The Roles of Dispersal and Local Competition

Both dispersal and local competitive ability may determine the outcome of competition among species that cannot coexist locally. I develop a spatially implicit model of two-species competition at a small spatial scale. The model predicts the relative fitness of two competitors based on local reproductive rates and regional dispersal rates in the context of the number, size, and extinction probability of habitat patches in the landscape. I test the predictions of this model experimentally using two genotypes of the bacteriophagous soil nematode Caenorhabditis elegans in patchy microcosms. One genotype has higher fecundity while the other is a better disperser. With such a fecundity-dispersal trade-off between competitors, the model predicts that relative fitness will be affected most by local population size when patches do not go extinct and by the number of patches when there is a high probability of patch extinction. The microcosm experiments support the model predictions. Both approaches suggest that competitive dominance in a patchily distributed transient assemblage will depend upon the architecture and predictability of the environment. These mechanisms, operating at a small scale with high spatial admixture, may be embedded in a larger metacommunity process.