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Cornuault J, Sanmartín I. A road map for phylogenetic models of species trees. Mol Phylogenet Evol 2022; 173:107483. [DOI: 10.1016/j.ympev.2022.107483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2021] [Revised: 03/09/2022] [Accepted: 04/05/2022] [Indexed: 10/18/2022]
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Gomard Y, Cornuault J, Licciardi S, Lagadec E, Belqat B, Dsouli N, Mavingui P, Tortosa P. Evidence of multiple colonizations as a driver of black fly diversification in an oceanic island. PLoS One 2018; 13:e0202015. [PMID: 30096163 PMCID: PMC6086440 DOI: 10.1371/journal.pone.0202015] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2017] [Accepted: 07/26/2018] [Indexed: 11/19/2022] Open
Abstract
True oceanic islands typically host reduced species diversity together with high levels of endemism, which make these environmental set-ups ideal for the exploration of species diversification drivers. In the present study, we used black fly species (Diptera: Simuliidae) from Reunion Island as a model to highlight the main drivers of insect species diversification in this young and remote volcanic island located in the Southwestern Indian Ocean. Using local and regional (Comoros and Seychelles archipelagos) samples as well as specimens from continental Africa, we tested the likelihood of two distinct scenarios, i.e. multiple colonizations vs. in-situ diversification. For this, posterior odds were used to test whether species from Reunion did form a monophyletic group and we estimated divergence times between species. Three out of the four previously described Reunion black fly species could be sampled, namely Simulium ruficorne, Simulium borbonense and Simulium triplex. The phylogenies based on nuclear and mitochondrial markers showed that S. ruficorne and S. borbonense are the most closely related species. Interestingly, we report a probable mitochondrial introgression between these two species although they diverged almost six million years ago. Finally, we showed that the three Reunion species did not form a monophyletic group, and, combined with the molecular datation, the results indicated that Reunion black fly diversity resulted from multiple colonization events. Thus, multiple colonizations, rather than in-situ diversification, are likely responsible for an important part of black fly diversity found on this young Darwinian island.
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Affiliation(s)
- Yann Gomard
- Université de La Réunion, UMR PIMIT (Processus Infectieux en Milieu Insulaire Tropical), INSERM 1187, CNRS 9192, IRD 249, Plateforme Technologique CYROI, Sainte-Clotilde, La Réunion, France
- * E-mail:
| | - Josselin Cornuault
- Department of Biodiversity and Conservation, Real Jardín Botánico, RJB-CSIC, Madrid, Spain
| | - Séverine Licciardi
- CIRAD, UMR ASTRE, Sainte-Clotilde, La Réunion, France
- ASTRE, Univ Montpellier, CIRAD, INRA, Montpellier, France
- Groupement d’Intérêt Public Cyclotron Reunion Océan Indien (GIP CYROI), Sainte-Clotilde, La Réunion, France
| | - Erwan Lagadec
- Université de La Réunion, UMR PIMIT (Processus Infectieux en Milieu Insulaire Tropical), INSERM 1187, CNRS 9192, IRD 249, Plateforme Technologique CYROI, Sainte-Clotilde, La Réunion, France
| | - Boutaïna Belqat
- Department of Biology, Faculty of Sciences, University Abdelmalek Essaâdi, Tétouan, Morocco
| | - Najla Dsouli
- Centre de Recherche et de Veille sur les maladies émergentes dans l’Océan Indien (CRVOI), Plateforme Technologique CYROI, Sainte-Clotilde, La Réunion, France
| | - Patrick Mavingui
- Université de La Réunion, UMR PIMIT (Processus Infectieux en Milieu Insulaire Tropical), INSERM 1187, CNRS 9192, IRD 249, Plateforme Technologique CYROI, Sainte-Clotilde, La Réunion, France
- Université de Lyon, Lyon, France; Université Lyon 1, Villeurbanne, France; CNRS, UMR 5557, Ecologie Microbienne, Villeurbanne, France; INRA, UMR1418, Villeurbanne, France
| | - Pablo Tortosa
- Université de La Réunion, UMR PIMIT (Processus Infectieux en Milieu Insulaire Tropical), INSERM 1187, CNRS 9192, IRD 249, Plateforme Technologique CYROI, Sainte-Clotilde, La Réunion, France
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The global biogeography of avian haemosporidian parasites is characterized by local diversification and intercontinental dispersal. Parasitology 2018; 146:213-219. [PMID: 30009719 DOI: 10.1017/s0031182018001130] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
The biogeographic histories of parasites and pathogens are infrequently compared with those of free-living species, including their hosts. Documenting the frequency with which parasites and pathogens disperse across geographic regions contributes to understanding not only their evolution, but also the likelihood that they may become emerging infectious diseases. Haemosporidian parasites of birds (parasite genera Plasmodium, Haemoproteus and Leucocytozoon) are globally distributed, dipteran-vectored parasites. To date, over 2000 avian haemosporidian lineages have been designated by molecular barcoding methods. To achieve their current distributions, some lineages must have dispersed long distances, often over water. Here we quantify such events using the global avian haemosporidian database MalAvi and additional records primarily from the Americas. We scored lineages as belonging to one or more global biogeographic regions based on infection records. Most lineages were restricted to a single region but some were globally distributed. We also used part of the cytochrome b gene to create genus-level parasite phylogenies and scored well-supported nodes as having descendant lineages in regional sympatry or allopatry. Descendant sister lineages of Plasmodium, Haemoproteus and Leucocytozoon were distributed in allopatry in 11, 16 and 15% of investigated nodes, respectively. Although a small but significant fraction of the molecular variance in cytochrome b of all three genera could be explained by biogeographic region, global parasite dispersal likely contributed to the majority of the unexplained variance. Our results suggest that avian haemosporidian parasites have faced few geographic barriers to dispersal over their evolutionary history.
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Brandt AJ, Lee WG, Tanentzap AJ, Hayman E, Fukami T, Anderson BJ. Evolutionary priority effects persist in anthropogenically created habitats, but not through nonnative plant invasion. THE NEW PHYTOLOGIST 2017; 215:865-876. [PMID: 28407248 DOI: 10.1111/nph.14544] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2017] [Accepted: 02/22/2017] [Indexed: 06/07/2023]
Abstract
Evolutionary priority effects, where early-arriving lineages occupy niche space via diversification and preclude dominance of later arrivals, have been observed in alpine and forest communities. However, the potential for evolutionary priority effects to persist in an era of rapid global change remains unclear. Here, we use a natural experiment of historical disturbance in New Zealand to test whether anthropogenic changes in available habitat and nonnative invasion eliminate the role of evolutionary priority effects in community assembly. We also test whether evolutionary priority effects diminish with decreasing resource availability. Older plant clades, as estimated by clade crown age, were relatively more abundant in both primary and secondary grassland. Relative abundance in primary grassland decreased with clade stem age, but only weakly. However, for both clade age estimates, relative abundance decreased with age when nonnative biomass was high and soil moisture was low. Our data show that patterns in community structure consistent with evolutionary priority effects can occur in both primary and secondary grasslands, the latter created by anthropogenic disturbance. However, nonnative invasion may overwhelm the effect of immigration timing on community dominance, possibly as a result of high immigration rates and preadaptation to anthropogenically modified environments.
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Affiliation(s)
| | - William G Lee
- Landcare Research, Dunedin, 9054, New Zealand
- School of Biological Sciences, University of Auckland, Auckland, 1010, New Zealand
| | - Andrew J Tanentzap
- Ecosystems and Global Change Group, Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, UK
| | - Ella Hayman
- Landcare Research, Palmerston North, 4442, New Zealand
| | - Tadashi Fukami
- Department of Biology, Stanford University, Stanford, CA, 94305, USA
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Warren BH, Simberloff D, Ricklefs RE, Aguilée R, Condamine FL, Gravel D, Morlon H, Mouquet N, Rosindell J, Casquet J, Conti E, Cornuault J, Fernández-Palacios JM, Hengl T, Norder SJ, Rijsdijk KF, Sanmartín I, Strasberg D, Triantis KA, Valente LM, Whittaker RJ, Gillespie RG, Emerson BC, Thébaud C. Islands as model systems in ecology and evolution: prospects fifty years after MacArthur-Wilson. Ecol Lett 2015; 18:200-17. [DOI: 10.1111/ele.12398] [Citation(s) in RCA: 279] [Impact Index Per Article: 31.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2014] [Revised: 07/01/2014] [Accepted: 11/10/2014] [Indexed: 12/14/2022]
Affiliation(s)
- Ben H. Warren
- Institute of Systematic Botany; University of Zurich; Zollikerstrasse 107 8008 Zurich Switzerland
- Department of Ecology and Evolutionary Biology; University of Tennessee; Knoxville TN 37996 USA
- UMR PVBMT; Université de La Réunion-CIRAD; 7 chemin de l'IRAT Ligne Paradis 97410 Saint Pierre Réunion France
| | - Daniel Simberloff
- Department of Ecology and Evolutionary Biology; University of Tennessee; Knoxville TN 37996 USA
| | - Robert E. Ricklefs
- Department of Biology; University of Missouri at St. Louis; 8001 Natural Bridge Road St. Louis MO 63121 USA
| | - Robin Aguilée
- Laboratoire Evolution & Diversité Biologique; UMR 5174 CNRS-Université Paul Sabatier-ENFA; 31062 Toulouse Cedex 9 France
| | - Fabien L. Condamine
- CNRS; UMR 7641 Centre de Mathématiques Appliquées (Ecole Polytechnique); Route de Saclay 91128 Palaiseau France
| | - Dominique Gravel
- Département de Biologie; Université du Québec à Rimouski 300; Allée des Ursulines; Rimouski QC G5L 3A1 Canada
| | - Hélène Morlon
- Institut de Biologie de l'Ecole Normale Supérieure (IBENS); UMR CNRS 8197; 46 rue d'Ulm 75005 Paris France
| | - Nicolas Mouquet
- Institut des Sciences de l'Evolution; UMR 5554; CNRS; Univ. Montpellier 2; CC 065 Place Eugène Bataillon 34095 Montpellier Cedex 05 France
| | - James Rosindell
- Department of Life Sciences; Imperial College London; Silwood Park Campus Ascot Berkshire SL5 7PY UK
| | - Juliane Casquet
- Laboratoire Evolution & Diversité Biologique; UMR 5174 CNRS-Université Paul Sabatier-ENFA; 31062 Toulouse Cedex 9 France
| | - Elena Conti
- Institute of Systematic Botany; University of Zurich; Zollikerstrasse 107 8008 Zurich Switzerland
| | - Josselin Cornuault
- Laboratoire Evolution & Diversité Biologique; UMR 5174 CNRS-Université Paul Sabatier-ENFA; 31062 Toulouse Cedex 9 France
| | - José María Fernández-Palacios
- Island Ecology and Biogeography Group; Instituto Universitario de Enfermedades Tropicales y Salud Pública de Canarias (IUETSPC); Universidad de La Laguna; Tenerife Canary Islands Spain
| | - Tomislav Hengl
- ISRIC-World Soil Information; 6700 AJ Wageningen The Netherlands
| | - Sietze J. Norder
- Institute for Biodiversity and Ecosystem Dynamics; Institute for Interdisciplinary Studies; University of Amsterdam; Science Park 904 1098XH Amsterdam The Netherlands
| | - Kenneth F. Rijsdijk
- Institute for Biodiversity and Ecosystem Dynamics; Institute for Interdisciplinary Studies; University of Amsterdam; Science Park 904 1098XH Amsterdam The Netherlands
| | - Isabel Sanmartín
- Real Jardín Botánico; RJB-CSIC; Plaza de Murillo 2 28014 Madrid Spain
| | - Dominique Strasberg
- UMR PVBMT; Université de La Réunion-CIRAD; 7 chemin de l'IRAT Ligne Paradis 97410 Saint Pierre Réunion France
| | - Kostas A. Triantis
- Department of Ecology and Taxonomy; Faculty of Biology; National and Kapodistrian University; Athens 15784 Greece
- Oxford University Centre for the Environment; South Parks Road Oxford OX1 3QY UK
| | - Luis M. Valente
- Unit of Evolutionary Biology/Systematic Zoology; Institute of Biochemistry and Biology; University of Potsdam; Karl-Liebknecht-Strasse 24-25 14476 Potsdam Germany
| | - Robert J. Whittaker
- Oxford University Centre for the Environment; South Parks Road Oxford OX1 3QY UK
| | - Rosemary G. Gillespie
- Division of Organisms and Environment; University of California; Berkeley CA 94720 USA
| | - Brent C. Emerson
- Island Ecology and Evolution Research Group; Instituto de Productos Naturales y Agrobiología (IPNA-CSIC); C/Astrofísico Francisco Sánchez 3 La Laguna 38206 Tenerife Canary Islands Spain
| | - Christophe Thébaud
- Laboratoire Evolution & Diversité Biologique; UMR 5174 CNRS-Université Paul Sabatier-ENFA; 31062 Toulouse Cedex 9 France
- CESAB / FRB; Domaine du Petit Arbois; Av Louis Philibert Aix-en-Provence 13100 France
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Valente LM, Etienne RS, Phillimore AB. The effects of island ontogeny on species diversity and phylogeny. Proc Biol Sci 2014; 281:20133227. [PMID: 24759856 DOI: 10.1098/rspb.2013.3227] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
A major goal of island biogeography is to understand how island communities are assembled over time. However, we know little about the influence of variable area and ecological opportunity on island biotas over geological timescales. Islands have limited life spans, and it has been posited that insular diversity patterns should rise and fall with an island's ontogeny. The potential of phylogenies to inform us of island ontogenetic stage remains unclear, as we lack a phylogenetic framework that focuses on islands rather than clades. Here, we present a parsimonious island-centric model that integrates phylogeny and ontogeny into island biogeography and can incorporate a negative feedback of diversity on species origination. This framework allows us to generate predictions about species richness and phylogenies on islands of different ages. We find that peak richness lags behind peak island area, and that endemic species age increases with island age on volcanic islands. When diversity negatively affects rates of immigration and cladogenesis, our model predicts speciation slowdowns on old islands. Importantly, we find that branching times of in situ radiations can be informative of an island's ontogenetic stage. This novel framework provides a quantitative means of uncovering processes responsible for island biogeography patterns using phylogenies.
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Affiliation(s)
- Luis M Valente
- Department of Life Sciences, Imperial College London, , Silwood Park Campus, Ascot SL5 7PY, UK, Unit of Evolutionary Biology / Systematic Zoology, Institute of Biochemistry and Biology, University of Potsdam, , Karl-Liebknecht-Strasse 24-25, Haus 26, D-14476 Potsdam, Germany, Community and Conservation Ecology, Centre for Ecological and Evolutionary Studies, University of Groningen, , PO Box 11103, Groningen 9700 CC, The Netherlands, Institute of Evolutionary Biology, University of Edinburgh, , Edinburgh EH9 3JT, UK
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