Dynamic percolation and diffusion in disordered systems

Absorbing-active transition in a multi-cellular system regulated by a dynamic force network

Collective cell migration in 3D extracellular matrix (ECM) is crucial to many physiological and pathological processes. Migrating cells can generate active pulling forces via actin filament contraction, which are transmitted to the ECM fibers and lead to a dynamically evolving force network in the system. Here, we elucidate the role of this force network in regulating collective cell behaviors using a minimal active-particle-on-network (APN) model, in which active particles can pull the fibers and hop between neighboring nodes of the network following local durotaxis. Our model reveals a dynamic transition as the particle number density approaches a critical value, from an "absorbing" state containing isolated stationary small particle clusters, to an "active" state containing a single large cluster undergoing constant dynamic reorganization. This reorganization is dominated by a subset of highly dynamic "radical" particles in the cluster, whose number also exhibits a transition at the same critical density. The transition is underlaid by the percolation of "influence spheres" due to the particle pulling forces. Our results suggest a robust mechanism based on ECM-mediated mechanical coupling for collective cell behaviors in 3D ECM.

Water diffusion within hydrated model grafted polymeric membranes with bimodal side chain length distributions

The effect of bimodal side chain length distributions on pore morphology and solvent diffusion within hydrated amphiphilic polymeric membranes is predicted. Seven polymeric architectures are constructed from hydrophobic backbones from which at regular intervals side chains branch off that are alternatingly short (composed of p hydrophobic A fragments or beads) and long (q A fragments, q > p). The side chains are end-linked with a hydrophilic C fragment. Pore morphologies at a water volume fraction of 0.16 are calculated by dissipative particle dynamics (DPD). Water diffusion through the water containing pores is calculated by tracer diffusion calculations through 140 selected snapshots and from the water bead motions. Diffusion constants decrease with difference in side chain lengths, q - p. Overall, the distance between pores also decreases with q - p. The results are explained by counting for every architecture the average number of bonds 〈N(bond)〉 between an A and the nearest C fragment. These results are in line with a database that contains more than 60 architectures. Diffusion constants tend to increase linearly with 〈N(bond)〉|C|(-1)|A|, where |C| and |A| are the C and A bead fractions within the architecture. 〈N(bond)〉 is therefore expected to be an interesting design parameter for obtaining low percolation thresholds for solvent and/or proton diffusion.

What is the function of mitochondrial networks? A theoretical assessment of hypotheses and proposal for future research

Mitochondria can change their shape from discrete isolated organelles to a large continuous reticulum. The cellular advantages underlying these fused networks are still incompletely understood. In this paper, we describe and compare hypotheses regarding the function of mitochondrial networks. We use mathematical and physical tools both to investigate existing hypotheses and to generate new ones, and we suggest experimental and modelling strategies. Among the novel insights we underline from this work are the possibilities that (i) selective mitophagy is not required for quality control because selective fusion is sufficient; (ii) increased connectivity may have non-linear effects on the diffusion rate of proteins; and (iii) fused networks can act to dampen biochemical fluctuations. We hope to convey to the reader that quantitative approaches can drive advances in the understanding of the physiological advantage of these morphological changes.

Diffusion in scale-free networks with annealed disorder

The scale-free (SF) networks that have been studied so far contained quenched disorder generated by random dilution which does not vary with the time. In practice, if a SF network is to represent, for example, the worldwide web, then the links between its various nodes may temporarily be lost and reestablished again later on. This gives rise to SF networks with annealed disorder. Even if the disorder is quenched, it may be more realistic to generate it by a dynamical process that is happening in the network. In this paper, we study diffusion in SF networks with annealed disorder generated by various scenarios, as well as in SF networks with quenched disorder which, however, is generated by the diffusion process itself. Several quantities of the diffusion process are computed, including the mean number of distinct sites visited, the mean number of returns to the origin, and the mean number of connected nodes that are accessible to the random walkers at any given time. The results, including (1) greatly reduced growth with the time of the mean number of distinct sites visited, (2) blocking of the random walkers, (3) the existence of a phase diagram that separates the region in which diffusion is possible from one in which diffusion is impossible, and (4) a transition in the structure of the networks at which the mean number of distinct sites visited vanishes, indicate completely different behavior for the computed quantities than those in SF networks with quenched disorder generated by simple random dilution.

Generalized model for dynamic percolation

We study the dynamics of a carrier, which performs a biased motion under the influence of an external field E-->, in an environment which is modeled by dynamic percolation and created by hard-core particles. The particles move randomly on a simple cubic lattice, constrained by hard-core exclusion, and they spontaneously annihilate and reappear at some prescribed rates. We determine the density profiles of the "environment" particles, as seen from the stationary moving carrier, and calculate its terminal velocity V(c) as the function of the applied field and other system parameters. For sufficiently small driving forces the force exerted on the carrier by the "environment" particles shows a viscouslike behavior. An analog Stokes formula for such dynamic percolative environments and the corresponding friction coefficient are derived. We show that the density profile of the environment particles is strongly inhomogeneous: In front of the stationary moving carrier the density is higher than the average density rho(s), while past the carrier the local density is lower than rho(s).