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Roh S, Lee T, Cheong DY, Kim Y, Oh S, Lee G. Direct observation of surface charge and stiffness of human metaphase chromosomes. NANOSCALE ADVANCES 2023; 5:368-377. [PMID: 36756276 PMCID: PMC9846444 DOI: 10.1039/d2na00620k] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Accepted: 12/17/2022] [Indexed: 06/18/2023]
Abstract
Metaphase chromosomes in which both polynucleotides and proteins are condensed with hierarchies are closely related to life phenomena such as cell division, cancer development, and cellular senescence. Nevertheless, their nature is rarely revealed, owing to their structural complexity and technical limitations in analytical methods. In this study, we used surface potential and nanomechanics mapping technology based on atomic force microscopy to measure the surface charge and intrinsic stiffness of metaphase chromosomes. We found that extra materials covering the chromosomes after the extraction process were positively charged. With the covering materials, the chromosomes were positively charged (ca. 44.9 ± 16.48 mV) and showed uniform stiffness (ca. 6.23 ± 1.98 MPa). In contrast, after getting rid of the extra materials through treatment with RNase and protease, the chromosomes were strongly negatively charged (ca. -197.4 ± 77.87 mV) and showed relatively non-uniform and augmented stiffness (ca. 36.87 ± 17.56 MPa). The results suggested undulating but compact coordination of condensed chromosomes. Additionally, excessive treatment with RNase and protease could destroy the chromosomal structure, providing an exceptional opportunity for multiscale stiffness mapping of polynucleotides, nucleosomes, chromatin fibers, and chromosomes in a single image. Our approach offers a new horizon in terms of an analytical technique for studying chromosome-related diseases.
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Affiliation(s)
- Seokbeom Roh
- Department of Biotechnology and Bioinformatics, Korea University Sejong 30019 Korea
- Interdisciplinary Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University Sejong 30019 Korea
| | - Taeha Lee
- Department of Biotechnology and Bioinformatics, Korea University Sejong 30019 Korea
- Interdisciplinary Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University Sejong 30019 Korea
| | - Da Yeon Cheong
- Department of Biotechnology and Bioinformatics, Korea University Sejong 30019 Korea
- Interdisciplinary Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University Sejong 30019 Korea
| | - Yeonjin Kim
- Department of Biotechnology and Bioinformatics, Korea University Sejong 30019 Korea
| | - Soohwan Oh
- College of Pharmacy, Korea University Sejong 30019 Korea
| | - Gyudo Lee
- Department of Biotechnology and Bioinformatics, Korea University Sejong 30019 Korea
- Interdisciplinary Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University Sejong 30019 Korea
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Liu N, Wang F, Liu L, Yu H, Xie S, Wang J, Wang Y, Lee GB, Li WJ. Rapidly patterning micro/nano devices by directly assembling ions and nanomaterials. Sci Rep 2016; 6:32106. [PMID: 27561917 PMCID: PMC4999812 DOI: 10.1038/srep32106] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2016] [Accepted: 08/02/2016] [Indexed: 11/11/2022] Open
Abstract
The synthesis and assembly of components are key steps in micro/nano device manufacturing. In this article, we report an optically controlled assembly method that can rapidly pattern micro/nano devices by directly assembling ions and nanomaterials without expensive physical masks and complex etching processes. Utilizing this controllable process, different types of device components (e.g., metallic and semiconductor) can be fabricated and assembled in 10–30 seconds, which is far more rapid and cost-effective than any other micro/nano fabrication method.
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Affiliation(s)
- Na Liu
- State Key Lab of Robotics, Shenyang Institute of Automation, Chinese Academy of Sciences, Liaoning 10016, China.,School of Mechatronics Engineering and Automation, Shanghai University, Shanghai 200072, China
| | - Feifei Wang
- State Key Lab of Robotics, Shenyang Institute of Automation, Chinese Academy of Sciences, Liaoning 10016, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Lianqing Liu
- State Key Lab of Robotics, Shenyang Institute of Automation, Chinese Academy of Sciences, Liaoning 10016, China
| | - Haibo Yu
- State Key Lab of Robotics, Shenyang Institute of Automation, Chinese Academy of Sciences, Liaoning 10016, China
| | - Shaorong Xie
- School of Mechatronics Engineering and Automation, Shanghai University, Shanghai 200072, China
| | - Jun Wang
- Key Laboratory of Materials for High-Power Laser, Shanghai Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Shanghai 201800, China
| | - Yuechao Wang
- State Key Lab of Robotics, Shenyang Institute of Automation, Chinese Academy of Sciences, Liaoning 10016, China
| | - Gwo-Bin Lee
- State Key Lab of Robotics, Shenyang Institute of Automation, Chinese Academy of Sciences, Liaoning 10016, China.,Department of Power Mechanical Engineering, National Tsing Hua University, Hsinchu 30013, Taiwan
| | - Wen J Li
- State Key Lab of Robotics, Shenyang Institute of Automation, Chinese Academy of Sciences, Liaoning 10016, China.,Department of Mechanical and Biomedical Engineering, City University of Hong Kong, Kowloon Tong, Hong Kong
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Lee G, Lee W, Lee H, Lee CY, Eom K, Kwon T. Self-assembled amyloid fibrils with controllable conformational heterogeneity. Sci Rep 2015; 5:16220. [PMID: 26592772 PMCID: PMC4655422 DOI: 10.1038/srep16220] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2015] [Accepted: 10/12/2015] [Indexed: 12/29/2022] Open
Abstract
Amyloid fibrils are a hallmark of neurodegenerative diseases and exhibit a conformational diversity that governs their pathological functions. Despite recent findings concerning the pathological role of their conformational diversity, the way in which the heterogeneous conformations of amyloid fibrils can be formed has remained elusive. Here, we show that microwave-assisted chemistry affects the self-assembly process of amyloid fibril formation, which results in their conformational heterogeneity. In particular, microwave-assisted chemistry allows for delicate control of the thermodynamics of the self-assembly process, which enabled us to tune the molecular structure of β-lactoglobulin amyloid fibrils. The heterogeneous conformations of amyloid fibrils, which can be tuned with microwave-assisted chemistry, are attributed to the microwave-driven thermal energy affecting the electrostatic interaction during the self-assembly process. Our study demonstrates how microwave-assisted chemistry can be used to gain insight into the origin of conformational heterogeneity of amyloid fibrils as well as the design principles showing how the molecular structures of amyloid fibrils can be controlled.
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Affiliation(s)
- Gyudo Lee
- School of Public Health, Harvard University, Boston, MA 02115, USA
| | - Wonseok Lee
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Republic of Korea
| | - Hyungbeen Lee
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Republic of Korea
| | - Chang Young Lee
- School of Energy and Chemical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919, Republic of Korea
| | - Kilho Eom
- Biomechanics Laboratory, College of Sport Science, Sungkyunkwan University (SKKU), Suwon 16419, Republic of Korea
| | - Taeyun Kwon
- SKKU Advanced Institute of Nano Technology, Sungkyunkwan University (SKKU), Suwon 16419, Republic of Korea
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Grüter RR, Vörös J, Zambelli T. FluidFM as a lithography tool in liquid: spatially controlled deposition of fluorescent nanoparticles. NANOSCALE 2013; 5:1097-1104. [PMID: 23262663 DOI: 10.1039/c2nr33214k] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
The atomic force microscope (AFM) is a powerful instrument for nanolithography, which is well characterized in air where the deposition process is steered by capillary action. In contrast, AFM patterning has been seldom achieved in liquid, mostly via electrochemical deposition. This study investigates the pressure-controlled local deposition of nanoparticles in a liquid environment using a FluidFM. Fluorescent 25 nm polystyrene nanospheres were chosen as nanoobjects to be dispensed because they enable both the in situ monitoring of the process by optical microscopy and the ex situ high-resolution characterization of the pattern by e.g. scanning electron microscopy. The FluidFM microchannel was filled with an aqueous solution of negatively charged nanoparticles to be delivered onto a glass surface coated with a polycation. An overpressure in the internal fluidic circuit leads to the deposition of nanoparticle dots and lines under the tip, while the force control regulates the contact between the probe and the surface. The nanoparticle adsorption process depends both on applied pressure and contact time (respectively tip velocity) and can be described using the Langmuir approximation for the random sequential adsorption model. Moreover, we observed that the force setpoint, which does not influence the capillary-driven mechanism in air, indeed affects the hydrodynamic resistance at the tip aperture and therefore the volumetric flow. The described method demonstrates the potential of FluidFM in depositing nano-sized objects in liquid with nanometre precision.
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Affiliation(s)
- Raphael R Grüter
- Laboratory of Biosensors and Bioelectronics, Institute for Biomedical Engineering, ETH Zurich, CH-8092, Switzerland
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Kannan B, Williams DE, Khoshmanesh K, Bowmaker GA, Travas-Sejdic J. The electrochemical growth of conducting polymer “nanowires”. J Electroanal Chem (Lausanne) 2012. [DOI: 10.1016/j.jelechem.2012.01.022] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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