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Xiong X, Shimizu Y, Matsukuma H, Gao W. A Self-Calibration Stitching Method for Pitch Deviation Evaluation of a Long-Range Linear Scale by Using a Fizeau Interferometer. SENSORS (BASEL, SWITZERLAND) 2021; 21:7412. [PMID: 34770718 PMCID: PMC8587772 DOI: 10.3390/s21217412] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Revised: 10/29/2021] [Accepted: 11/06/2021] [Indexed: 12/02/2022]
Abstract
An interferometric self-calibration method for the evaluation of the pitch deviation of scale grating has been extended to evaluate the pitch deviation of the long-range type linear scale by utilizing the stitching interferometry technique. Following the previous work, in which the interferometric self-calibration method was proposed to assess the pitch deviation of the scale grating by combing the first-order diffracted beams from the grating, a stitching calibration method is proposed to enlarge the measurement range. Theoretical analysis is performed to realize the X-directional pitch deviation calibration of the long-range linear scale while reducing the second-order accumulation effect by canceling the influence of the reference flat error in the sub-apertures' measurements. In this paper, the stitching interferometry theory is briefly reviewed, and theoretical equations of the X-directional pitch deviation stitching are derived for evaluation of the pitch deviation of the long-range linear scale. Followed by the simulation verification, some experiments with a linear scale of 105 mm length from a commercial interferential scanning-type optical encoder are conducted to verify the feasibility of the self-calibration stitching method for the calibration of the X-directional pitch deviation of the linear scale over its whole area.
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Affiliation(s)
- Xin Xiong
- Department of Finemechanics, Tohoku University, Sendai 980-8579, Japan; (X.X.); (H.M.); (W.G.)
- The State Key Lab of Fluid Power and Mechatronic Systems, Zhejiang University, Hangzhou 310027, China
| | - Yuki Shimizu
- Department of Finemechanics, Tohoku University, Sendai 980-8579, Japan; (X.X.); (H.M.); (W.G.)
- Division of Mechanical and Space Engineering, Graduate School of Engineering, Hokkaido University, Kita 13, Nishi 8, Kita-ku, Sapporo 060-8628, Japan
| | - Hiraku Matsukuma
- Department of Finemechanics, Tohoku University, Sendai 980-8579, Japan; (X.X.); (H.M.); (W.G.)
| | - Wei Gao
- Department of Finemechanics, Tohoku University, Sendai 980-8579, Japan; (X.X.); (H.M.); (W.G.)
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Clark RN, Burrows R, Patel R, Moore S, Hallam KR, Flewitt PE. Nanometre to micrometre length-scale techniques for characterising environmentally-assisted cracking: An appraisal. Heliyon 2020; 6:e03448. [PMID: 32190752 PMCID: PMC7068651 DOI: 10.1016/j.heliyon.2020.e03448] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2019] [Revised: 12/13/2019] [Accepted: 02/14/2020] [Indexed: 11/26/2022] Open
Abstract
The appraisal is strongly focussed on challenges associated with the nuclear sector, however these are representative of what is generally encountered by a range of engineering applications. Ensuring structural integrity of key nuclear plant components is essential for both safe and economic operation. Structural integrity assessments require knowledge of the mechanical and physical properties of materials, together with an understanding of mechanisms that can limit the overall operating life. With improved mechanistic understanding comes the ability to develop predictive models of the service life of components. Such models often require parameters which can be provided only by characterisation of processes occurring in situ over a range of scales, with the sub-micrometre-scale being particularly important, but also challenging. This appraisal reviews the techniques currently available to characterise microstructural features at the nanometre to micrometre length-scale that can be used to elucidate mechanisms that lead to the early stages of environmentally-assisted crack formation and subsequent growth. Following an appraisal of the techniques and their application, there is a short discussion and consideration for future opportunities.
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Affiliation(s)
- Ronald N. Clark
- National Nuclear Laboratory Limited, 102B, Stonehouse Park, Sperry Way, Stonehouse, Gloucestershire, GL10 3UT, United Kingdom
| | - Robert Burrows
- National Nuclear Laboratory Limited, 102B, Stonehouse Park, Sperry Way, Stonehouse, Gloucestershire, GL10 3UT, United Kingdom
| | - Rajesh Patel
- National Nuclear Laboratory Limited, 102B, Stonehouse Park, Sperry Way, Stonehouse, Gloucestershire, GL10 3UT, United Kingdom
| | - Stacy Moore
- University of Bristol, Interface Analysis Centre, HH Wills Physics Laboratory, Tyndall Avenue, Bristol, BS8 1TL, United Kingdom
| | - Keith R. Hallam
- University of Bristol, Interface Analysis Centre, HH Wills Physics Laboratory, Tyndall Avenue, Bristol, BS8 1TL, United Kingdom
| | - Peter E.J. Flewitt
- University of Bristol, Interface Analysis Centre, HH Wills Physics Laboratory, Tyndall Avenue, Bristol, BS8 1TL, United Kingdom
- University of Bristol, School of Physics, HH Wills Physics Laboratory, Tyndall Avenue, Bristol, BS8 1TL, United Kingdom
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Shi Y, Li W, Gao S, Lu M, Hu X. Atomic force microscope scanning head with 3-dimensional orthogonal scanning to eliminate the curved coupling. Ultramicroscopy 2018; 190:77-80. [PMID: 29704728 DOI: 10.1016/j.ultramic.2018.03.020] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2017] [Revised: 02/17/2018] [Accepted: 03/26/2018] [Indexed: 11/16/2022]
Abstract
An atomic force microscopy (AFM) scanning head is designed with the probe orthogonal scanning mode for metrological AFM to eliminate the curvature distortion. The AFM probe is driven by piezostage and the scanning trajectory of the probe in 3 directions are orthogonal to reduce the cross coupling. A new optical lever amplification optical path is developed to eliminate the coupling error. The tracing lens and probe tip are moved as an integrated part. The AFM is operated at contacting mode. The step approach process of the probe tip is tested to the sample surface and the noise of the AFM head is analyzed. The response of the probe demonstrates a 0.5 nm resolution of the probe head in the z direction. Finally, the planar scanning performance of the scanning head is demonstrated compared with tube scanning AFM.
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Affiliation(s)
- Yushu Shi
- State Key Laboratory of Precision Measuring Technology and Instruments, Tianjin University, Tianjin 300072, China; National Institute of Metrology, Beijing 100029, China
| | - Wei Li
- National Institute of Metrology, Beijing 100029, China
| | - Sitian Gao
- National Institute of Metrology, Beijing 100029, China.
| | - Mingzhen Lu
- National Institute of Metrology, Beijing 100029, China
| | - Xiaodong Hu
- State Key Laboratory of Precision Measuring Technology and Instruments, Tianjin University, Tianjin 300072, China.
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Mikheikin A, Olsen A, Leslie K, Russell-Pavier F, Yacoot A, Picco L, Payton O, Toor A, Chesney A, Gimzewski JK, Mishra B, Reed J. DNA nanomapping using CRISPR-Cas9 as a programmable nanoparticle. Nat Commun 2017; 8:1665. [PMID: 29162844 PMCID: PMC5698298 DOI: 10.1038/s41467-017-01891-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2017] [Accepted: 10/24/2017] [Indexed: 01/26/2023] Open
Abstract
Progress in whole-genome sequencing using short-read (e.g., <150 bp), next-generation sequencing technologies has reinvigorated interest in high-resolution physical mapping to fill technical gaps that are not well addressed by sequencing. Here, we report two technical advances in DNA nanotechnology and single-molecule genomics: (1) we describe a labeling technique (CRISPR-Cas9 nanoparticles) for high-speed AFM-based physical mapping of DNA and (2) the first successful demonstration of using DVD optics to image DNA molecules with high-speed AFM. As a proof of principle, we used this new “nanomapping” method to detect and map precisely BCL2–IGH translocations present in lymph node biopsies of follicular lymphoma patents. This HS-AFM “nanomapping” technique can be complementary to both sequencing and other physical mapping approaches. Physical mapping of DNA can be used to detect structural variants and for whole-genome haplotype assembly. Here, the authors use CRISPR-Cas9 and high-speed atomic force microscopy to ‘nanomap’ single molecules of DNA.
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Affiliation(s)
- Andrey Mikheikin
- Department of Physics, Virginia Commonwealth University, Richmond, 23284, VA, USA
| | - Anita Olsen
- Department of Physics, Virginia Commonwealth University, Richmond, 23284, VA, USA
| | - Kevin Leslie
- Department of Physics, Virginia Commonwealth University, Richmond, 23284, VA, USA
| | - Freddie Russell-Pavier
- National Physical Laboratory, Hampton Road, Teddington, TW11 0LW, Middlesex, UK.,Interface Analysis Centre, H. H. Wills Physics Laboratory, Tyndall Avenue, Bristol, BS8 1TL, UK
| | - Andrew Yacoot
- National Physical Laboratory, Hampton Road, Teddington, TW11 0LW, Middlesex, UK
| | - Loren Picco
- Interface Analysis Centre, H. H. Wills Physics Laboratory, Tyndall Avenue, Bristol, BS8 1TL, UK
| | - Oliver Payton
- Interface Analysis Centre, H. H. Wills Physics Laboratory, Tyndall Avenue, Bristol, BS8 1TL, UK
| | - Amir Toor
- Department of Internal Medicine, VCU School of Medicine, Richmond, 23284, VA, USA.,VCU Massey Cancer Center, Richmond, 23284, VA, USA
| | - Alden Chesney
- VCU Massey Cancer Center, Richmond, 23284, VA, USA.,Department of Pathology, VCU School of Medicine, Richmond, 23284, VA, USA
| | - James K Gimzewski
- Department of Chemistry and Biochemistry, UCLA, Los Angeles, 90095, CA, USA
| | - Bud Mishra
- Departments of Computer Science and Mathematics, Courant Institute of Mathematical Sciences, New York University, New York, 10012, NY, USA
| | - Jason Reed
- Department of Physics, Virginia Commonwealth University, Richmond, 23284, VA, USA. .,VCU Massey Cancer Center, Richmond, 23284, VA, USA.
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Ulčinas A, Vaitekonis Š. Rotational scanning atomic force microscopy. NANOTECHNOLOGY 2017; 28:10LT02. [PMID: 28106532 DOI: 10.1088/1361-6528/aa5af7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
A non-raster scanning technique for atomic force microscopy (AFM) imaging which combines rotational and translational motion is presented. The use of rotational motion for the fast scan axis allows us to significantly increase the scanning speed while imaging a large area (diameter > 30 μm). An image reconstruction algorithm and the factors influencing the resolution of the technique are discussed. The experimental results show the potential of the rotational scanning technique for high-throughput large area AFM investigation.
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Affiliation(s)
- A Ulčinas
- Department of Nanoengineering, Center for Physical Sciences and Technology, Savanoriu 231, 02300 Vilnius, Lithuania
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Mikheikin A, Olsen A, Picco L, Payton O, Mishra B, Gimzewski JK, Reed J. High-Speed Atomic Force Microscopy Revealing Contamination in DNA Purification Systems. Anal Chem 2016; 88:2527-32. [PMID: 26878668 DOI: 10.1021/acs.analchem.5b04023] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Andrey Mikheikin
- Department
of Physics, Virginia Commonwealth University, Richmond, Virginia 23284, United States
| | - Anita Olsen
- Department
of Physics, Virginia Commonwealth University, Richmond, Virginia 23284, United States
| | - Loren Picco
- Interface
Analysis Centre, H. H. Wills Physics Laboratory, University of Bristol, Tyndall Avenue, Bristol, BS8 1TL, United Kingdom
| | - Oliver Payton
- Interface
Analysis Centre, H. H. Wills Physics Laboratory, University of Bristol, Tyndall Avenue, Bristol, BS8 1TL, United Kingdom
| | - Bud Mishra
- Departments
of Computer Science and Mathematics, Courant Institute of Mathematical Sciences, New York University, New York, New York 10012, United States
| | - James K. Gimzewski
- Department
of Chemistry and Biochemistry, UCLA, Los Angeles, California 90095, United States
- California
NanoSystems Institute (CNSI) at the University of California, Los Angeles, Los
Angeles, California 90095, United States
| | - Jason Reed
- Department
of Physics, Virginia Commonwealth University, Richmond, Virginia 23284, United States
- VCU Massey Cancer Center, Richmond, Virginia 23298, United States
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