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Huber ST, Sarajlic E, Huijink R, Weis F, Evers WH, Jakobi AJ. Nanofluidic chips for cryo-EM structure determination from picoliter sample volumes. eLife 2022; 11:72629. [PMID: 35060902 PMCID: PMC8786315 DOI: 10.7554/elife.72629] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Accepted: 12/07/2021] [Indexed: 01/25/2023] Open
Abstract
Cryogenic electron microscopy has become an essential tool for structure determination of biological macromolecules. In practice, the difficulty to reliably prepare samples with uniform ice thickness still represents a barrier for routine high-resolution imaging and limits the current throughput of the technique. We show that a nanofluidic sample support with well-defined geometry can be used to prepare cryo-EM specimens with reproducible ice thickness from picoliter sample volumes. The sample solution is contained in electron-transparent nanochannels that provide uniform thickness gradients without further optimisation and eliminate the potentially destructive air-water interface. We demonstrate the possibility to perform high-resolution structure determination with three standard protein specimens. Nanofabricated sample supports bear potential to automate the cryo-EM workflow, and to explore new frontiers for cryo-EM applications such as time-resolved imaging and high-throughput screening.
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Affiliation(s)
- Stefan T Huber
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology
| | | | | | - Felix Weis
- Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL)
| | - Wiel H Evers
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology
| | - Arjen J Jakobi
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology
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Gosse C, Stanescu S, Frederick J, Lefrançois S, Vecchiola A, Moskura M, Swaraj S, Belkhou R, Watts B, Haltebourg P, Blot C, Daillant J, Guenoun P, Chevallard C. A pressure-actuated flow cell for soft X-ray spectromicroscopy in liquid media. LAB ON A CHIP 2020; 20:3213-3229. [PMID: 32735308 DOI: 10.1039/c9lc01127g] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
We present and fully characterize a flow cell dedicated to imaging in liquid at the nanoscale. Its use as a routine sample environment for soft X-ray spectromicroscopy is demonstrated, in particular through the spectral analysis of inorganic particles in water. The care taken in delineating the fluidic pathways and the precision associated with pressure actuation ensure the efficiency of fluid renewal under the beam, which in turn guarantees a successful utilization of this microfluidic tool for in situ kinetic studies. The assembly of the described flow cell necessitates no sophisticated microfabrication and can be easily implemented in any laboratory. Furthermore, the design principles we relied on are transposable to all microscopies involving strongly absorbed radiation (e.g. X-ray, electron), as well as to all kinds of X-ray diffraction/scattering techniques.
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Affiliation(s)
- Charlie Gosse
- Laboratoire de Photonique et de Nanostructures, LPN-CNRS, Route de Nozay, 91460 Marcoussis, France.
| | - Stefan Stanescu
- Synchrotron Soleil, L'Orme des Merisiers, Saint-Aubin - BP 48, 91192 Gif-sur-Yvette Cedex, France
| | - Joni Frederick
- Laboratoire de Photonique et de Nanostructures, LPN-CNRS, Route de Nozay, 91460 Marcoussis, France. and Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
| | - Stéphane Lefrançois
- Synchrotron Soleil, L'Orme des Merisiers, Saint-Aubin - BP 48, 91192 Gif-sur-Yvette Cedex, France
| | - Aymeric Vecchiola
- Laboratoire de Photonique et de Nanostructures, LPN-CNRS, Route de Nozay, 91460 Marcoussis, France. and Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
| | - Mélanie Moskura
- Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
| | - Sufal Swaraj
- Synchrotron Soleil, L'Orme des Merisiers, Saint-Aubin - BP 48, 91192 Gif-sur-Yvette Cedex, France
| | - Rachid Belkhou
- Synchrotron Soleil, L'Orme des Merisiers, Saint-Aubin - BP 48, 91192 Gif-sur-Yvette Cedex, France
| | - Benjamin Watts
- Photon Science Division, Paul Scherrer Institute, 5232 Villigen, Switzerland
| | - Patrick Haltebourg
- Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
| | - Christian Blot
- Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
| | - Jean Daillant
- Synchrotron Soleil, L'Orme des Merisiers, Saint-Aubin - BP 48, 91192 Gif-sur-Yvette Cedex, France and Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
| | - Patrick Guenoun
- Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
| | - Corinne Chevallard
- Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
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