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Lee D, Jung HG, Park D, Bang J, Hong JH, Lee SW, Roh S, Jang JW, Kim Y, Hwang KS, Lee YS, Park JY, Jung ID, Lee JH, Lee G, Yoon DS. Biomimetically Engineered Amyloid-Shelled Gold Nanocomplexes for Discovering α-Synuclein Oligomer-Degrading Drugs. ACS APPLIED MATERIALS & INTERFACES 2023; 15:2538-2551. [PMID: 36548054 DOI: 10.1021/acsami.2c14650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
The assembly of α-synuclein (αS) oligomers is recognized as the main pathological driver of synucleinopathies. While the elimination of toxic αS oligomers shows promise for the treatment of Parkinson's disease (PD), the discovery of αS oligomer degradation drugs has been hindered by the lack of proper drug screening tools. Here, we report a drug screening platform for monitoring the efficacy of αS-oligomer-degrading drugs using amyloid-shelled gold nanocomplexes (ASGNs). We fabricate ASGNs in the presence of dopamine, mimicking the in vivo generation process of pathological αS oligomers. To test our platform, the first of its kind for PD drugs, we use αS-degrading proteases and various small molecular substances that have shown efficacy in PD treatment. We demonstrate that the ASGN-based in vitro platform has strong potential to discover effective αS-oligomer-targeting drugs, and thus it may reduce the attrition problem in drug discovery for PD treatment.
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Affiliation(s)
- Dongtak Lee
- School of Biomedical Engineering, Korea University, Seoul02841, South Korea
| | - Hyo Gi Jung
- School of Biomedical Engineering, Korea University, Seoul02841, South Korea
- Interdisciplinary Program in Precision Public Health, Korea University, Seoul02841, South Korea
| | - Dongsung Park
- School of Biomedical Engineering, Korea University, Seoul02841, South Korea
- Department of Clinical Pharmacology and Therapeutics, College of Medicine, Kyung Hee University, Seoul02447, South Korea
| | - Junho Bang
- School of Biomedical Engineering, Korea University, Seoul02841, South Korea
- Interdisciplinary Program in Precision Public Health, Korea University, Seoul02841, South Korea
| | - Ji Hye Hong
- School of Biomedical Engineering, Korea University, Seoul02841, South Korea
| | - Sang Won Lee
- School of Biomedical Engineering, Korea University, Seoul02841, South Korea
| | - Seokbeom Roh
- Department of Biotechnology and Bioinformatics, Korea University, Sejong30019, South Korea
- Interdisciplinary Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University, Sejong30019, South Korea
| | - Jae Won Jang
- School of Biomedical Engineering, Korea University, Seoul02841, South Korea
- Interdisciplinary Program in Precision Public Health, Korea University, Seoul02841, South Korea
| | - Yonghwan Kim
- School of Biomedical Engineering, Korea University, Seoul02841, South Korea
- Interdisciplinary Program in Precision Public Health, Korea University, Seoul02841, South Korea
| | - Kyo Seon Hwang
- Department of Clinical Pharmacology and Therapeutics, College of Medicine, Kyung Hee University, Seoul02447, South Korea
| | - Young-Sun Lee
- ASTRION, 47, Gaeunsa-gil, Seongbuk-gu, Seoul02842, Republic of Korea
- School of Biosystem and Biomedical Science, College of Health Science, Korea University, Seoul02841, Republic of Korea
| | - Jae-Yong Park
- ASTRION, 47, Gaeunsa-gil, Seongbuk-gu, Seoul02842, Republic of Korea
- School of Biosystem and Biomedical Science, College of Health Science, Korea University, Seoul02841, Republic of Korea
| | - In Duk Jung
- ASTRION, 47, Gaeunsa-gil, Seongbuk-gu, Seoul02842, Republic of Korea
| | - Jeong Hoon Lee
- Department of Electrical Engineering, Kwangwoon University, Seoul01897, South Korea
| | - Gyudo Lee
- Department of Biotechnology and Bioinformatics, Korea University, Sejong30019, South Korea
- Interdisciplinary Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University, Sejong30019, South Korea
| | - Dae Sung Yoon
- School of Biomedical Engineering, Korea University, Seoul02841, South Korea
- Interdisciplinary Program in Precision Public Health, Korea University, Seoul02841, South Korea
- ASTRION, 47, Gaeunsa-gil, Seongbuk-gu, Seoul02842, Republic of Korea
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Jeon B, Jung HG, Lee SW, Lee G, Shim JH, Kim MO, Kim BJ, Kim SH, Lee H, Lee SW, Yoon DS, Jo SJ, Choi TH, Lee W. Melanoma Detection by AFM Indentation of Histological Specimens. Diagnostics (Basel) 2022; 12:1736. [PMID: 35885640 PMCID: PMC9323377 DOI: 10.3390/diagnostics12071736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Revised: 06/29/2022] [Accepted: 07/15/2022] [Indexed: 11/16/2022] Open
Abstract
Melanoma is visible unlike other types of cancer, but it is still challenging to diagnose correctly because of the difficulty in distinguishing between benign nevus and melanoma. We conducted a robust investigation of melanoma, identifying considerable differences in local elastic properties between nevus and melanoma tissues by using atomic force microscopy (AFM) indentation of histological specimens. Specifically, the histograms of the elastic modulus of melanoma displayed multimodal Gaussian distributions, exhibiting heterogeneous mechanical properties, in contrast with the unimodal distributions of elastic modulus in the benign nevus. We identified this notable signature was consistent regardless of blotch incidence by sex, age, anatomical site (e.g., thigh, calf, arm, eyelid, and cheek), or cancer stage (I, IV, and V). In addition, we found that the non-linearity of the force-distance curves for melanoma is increased compared to benign nevus. We believe that AFM indentation of histological specimens may technically complement conventional histopathological analysis for earlier and more precise melanoma detection.
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Affiliation(s)
- Byoungjun Jeon
- Interdisciplinary Program for Bioengineering, Graduate School, Seoul National University, Seoul 08826, Korea;
| | - Hyo Gi Jung
- School of Biomedical Engineering, Korea University, Seoul 02841, Korea; (H.G.J.); (S.W.L.); (D.S.Y.)
- Interdisciplinary Program in Precision Public Health, Korea University, Seoul 02841, Korea
| | - Sang Won Lee
- School of Biomedical Engineering, Korea University, Seoul 02841, Korea; (H.G.J.); (S.W.L.); (D.S.Y.)
| | - Gyudo Lee
- Department of Biotechnology and Bioinformatics, Korea University, Sejong 30019, Korea;
- Interdisciplinary Graduate Program for Artificial Intelligence Smart Convergence Technology, Korea University, Sejong 30019, Korea
| | - Jung Hee Shim
- Department of Plastic and Reconstructive Surgery, Research Services, Seoul National University Bundang Hospital, Seongnam 13620, Korea;
| | - Mi Ok Kim
- Department of Plastic and Reconstructive Surgery, Institute of Human Environment Interface Biology, Seoul National University College of Medicine, Seoul 03087, Korea; (M.O.K.); (B.J.K.)
| | - Byung Jun Kim
- Department of Plastic and Reconstructive Surgery, Institute of Human Environment Interface Biology, Seoul National University College of Medicine, Seoul 03087, Korea; (M.O.K.); (B.J.K.)
| | - Sang-Hyon Kim
- Department of Internal Medicine, Keimyung University Dongsan Medical Center, Daegu 41931, Korea;
| | - Hyungbeen Lee
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Korea; (H.L.); (S.W.L.)
- R&D Center of Curigin Ltd., Seoul 04778, Korea
| | - Sang Woo Lee
- Department of Biomedical Engineering, Yonsei University, Wonju 26493, Korea; (H.L.); (S.W.L.)
| | - Dae Sung Yoon
- School of Biomedical Engineering, Korea University, Seoul 02841, Korea; (H.G.J.); (S.W.L.); (D.S.Y.)
- Interdisciplinary Program in Precision Public Health, Korea University, Seoul 02841, Korea
- Astrion Inc., Seoul 02841, Korea
| | - Seong Jin Jo
- Department of Dermatology, Seoul National University College of Medicine, Seoul 03087, Korea
| | - Tae Hyun Choi
- Department of Plastic and Reconstructive Surgery, Institute of Human Environment Interface Biology, Seoul National University College of Medicine, Seoul 03087, Korea; (M.O.K.); (B.J.K.)
| | - Wonseok Lee
- Department of Electrical Engineering, Korea National University of Transportation, Chungju 27469, Korea
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Sun Q, Xie X, Song Y, Sun L. A review on silver-mediated DNA base pairs: methodology and application. Biomater Res 2022; 26:9. [PMID: 35256004 PMCID: PMC8900454 DOI: 10.1186/s40824-022-00254-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 02/13/2022] [Indexed: 12/27/2022] Open
Abstract
The investigation of the interaction between metal ions and DNA has always attracted much attention in the fields of bioinorganic chemistry, supramolecular coordination chemistry, and DNA nanotechnology. Its mode of action can be simply divided into two aspects. On the one hand, it is non-specific electrostatic adsorption, mainly including Na+, K+, Mg2+, Ca2+ and other physiologically regulating ions; on the other hand, it is specific covalent binding, such as Pt2+, Hg2+, Ag+ and other heavy metal ions. This article focuses on the mechanism of action between Ag+ and DNA mismatch pair C-C, and summarizes its main characterization methods and various applications. It aims to provide a certain reference for the field of biological devices. With the development of cryo-electron microscopy and liquidcell TEM, the structure of C-Ag+-C is expected to be further characterized, which will be more widely used.
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Lee D, Kim I, Lee SW, Lee G, Yoon DS. RETRACTED CHAPTER: Technical Features and Challenges of the Paper-Based Colorimetric Assay. Bioanalysis 2021. [DOI: 10.1007/978-981-15-8723-8_4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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Kumar V, Guleria P. Application of DNA-Nanosensor for Environmental Monitoring: Recent Advances and Perspectives. CURRENT POLLUTION REPORTS 2020:1-21. [PMID: 33344145 PMCID: PMC7732738 DOI: 10.1007/s40726-020-00165-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 10/04/2020] [Indexed: 05/24/2023]
Abstract
PURPOSE OF REVIEW Environmental pollutants are threat to human beings. Pollutants can lead to human health and environment hazards. The purpose of this review is to summarize the work done on detection of environmental pollutants using DNA nanosensors and challenges in the areas that can be focused for safe environment. RECENT FINDINGS Most of the DNA-based nanosensors designed so far use DNA as recognition element. ssDNA, dsDNA, complementary mismatched DNA, aptamers, and G-quadruplex DNA are commonly used as probes in nanosensors. More and more DNA sequences are being designed that can specifically detect various pollutants even simultaneously in complex milk, wastewater, soil, blood, tap water, river, and pond water samples. The feasibility of direct detection, ease of designing, and analysis makes DNA nanosensors fit for future point-of-care applications. SUMMARY DNA nanosensors are easy to design and have good sensitivity. DNA component and nanomaterials can be designed in a controlled manner to detect various environmental pollutants. This review identifies the recent advances in DNA nanosensor designing and opportunities available to design nanosensors for unexplored pathogens, antibiotics, pesticides, GMO, heavy metals, and other toxic pollutant.
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Affiliation(s)
- Vineet Kumar
- Department of Biotechnology, School of Bioengineering and Biosciences, Lovely Professional University (LPU), Jalandhar – Delhi G.T. Road, Phagwara, Punjab 144411 India
| | - Praveen Guleria
- Department of Biotechnology, Faculty of Life Sciences, DAV University, Jalandhar, Punjab 144012 India
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Bansal SA, Kumar V, Karimi J, Singh AP, Kumar S. Role of gold nanoparticles in advanced biomedical applications. NANOSCALE ADVANCES 2020; 2:3764-3787. [PMID: 36132791 PMCID: PMC9419294 DOI: 10.1039/d0na00472c] [Citation(s) in RCA: 116] [Impact Index Per Article: 29.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Accepted: 07/14/2020] [Indexed: 05/20/2023]
Abstract
Gold nanoparticles (GNPs) have generated keen interest among researchers in recent years due to their excellent physicochemical properties. In general, GNPs are biocompatible, amenable to desired functionalization, non-corroding, and exhibit size and shape dependent optical and electronic properties. These excellent properties of GNPs exhibit their tremendous potential for use in diverse biomedical applications. Herein, we have evaluated the recent advancements of GNPs to highlight their exceptional potential in the biomedical field. Special focus has been given to emerging biomedical applications including bio-imaging, site specific drug/gene delivery, nano-sensing, diagnostics, photon induced therapeutics, and theranostics. We have also elaborated on the basics, presented a historical preview, and discussed the synthesis strategies, functionalization methods, stabilization techniques, and key properties of GNPs. Lastly, we have concluded this article with key findings and unaddressed challenges. Overall, this review is a complete package to understand the importance and achievements of GNPs in the biomedical field.
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Affiliation(s)
- Suneev Anil Bansal
- Department of Mechanical Engineering, University Institute of Engineering and Technology (UIET), Panjab University Chandigarh India 160014
- Department of Mechanical Engineering, MAIT, Maharaja Agrasen University HP India 174103
| | - Vanish Kumar
- National Agri-Food Biotechnology Institute (NABI) S. A. S. Nagar Punjab 140306 India
| | - Javad Karimi
- Department of Biology, Faculty of Sciences, Shiraz University Shiraz 71454 Iran
| | - Amrinder Pal Singh
- Department of Mechanical Engineering, University Institute of Engineering and Technology (UIET), Panjab University Chandigarh India 160014
| | - Suresh Kumar
- Department of Applied Science, University Institute of Engineering and Technology (UIET), Panjab University Chandigarh India 160014
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Dai X, Li Q, Aldalbahi A, Wang L, Fan C, Liu X. DNA-Based Fabrication for Nanoelectronics. NANO LETTERS 2020; 20:5604-5615. [PMID: 32787185 DOI: 10.1021/acs.nanolett.0c02511] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The bottom-up DNA-templated nanoelectronics exploits the unparalleled self-assembly properties of DNA molecules and their amenability with various types of nanomaterials. In principle, nanoelectronic devices can be bottom-up assembled with near-atomic precision, which compares favorably with well-established top-down fabrication process with nanometer precision. Over the past decade, intensive effort has been made to develop DNA-based nanoassemblies including DNA-metal, DNA-polymer, and DNA-carbon nanotube complexes. This review introduces the history of DNA-based fabrication for nanoelectronics briefly and summarizes the state-of-art advances of DNA-based nanoelectronics. In particular, the most widely applied characterization techniques to explore their unique electronic properties at the nanoscale are described and discussed, including scanning tunneling microscopy, conductive atomic force microscopy, and Kelvin probe force microscopy. We also provide a perspective on potential applications of DNA-based nanoelectronics.
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Affiliation(s)
- Xinpei Dai
- CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 201800, China
- Bioimaging Center, Shanghai Synchrotron Radiation Facility, Zhangjiang Laboratory, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China
| | - Qian Li
- School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules, Institute of Translational Medicine, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Ali Aldalbahi
- Department of Chemistry, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Lihua Wang
- CAS Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 201800, China
- Bioimaging Center, Shanghai Synchrotron Radiation Facility, Zhangjiang Laboratory, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China
| | - Chunhai Fan
- School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules, Institute of Translational Medicine, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Xiaoguo Liu
- School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules, Institute of Translational Medicine, Shanghai Jiao Tong University, Shanghai 200240, China
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Deng H, He S, Lin X, Yang L, Lin Z, Chen R, Peng H, Chen W. Target-triggered inhibiting oxidase-mimicking activity of platinum nanoparticles for ultrasensitive colorimetric detection of silver ion. CHINESE CHEM LETT 2019. [DOI: 10.1016/j.cclet.2019.05.032] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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