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Shi C, Qiu Z, Liu C, Chen H, Ye Y, Zhu Y, Liu X, Zheng H, Liang D, Wang H. Rapid variable flip angle positive susceptibility contrast imaging for clinical metal seeds. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2022; 340:107232. [PMID: 35588593 DOI: 10.1016/j.jmr.2022.107232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Revised: 04/25/2022] [Accepted: 04/26/2022] [Indexed: 06/15/2023]
Abstract
Positive susceptibility contrast imaging (PSCI) based on susceptibility mapping exhibits excellent efficacy for visualizing magnetic resonance (MR)-compatible metallic devices because of their high magnetic susceptibility compared to that of human tissues. However, the long-acquisition time required by the two-dimensional fast spin echo (2D FSE)-based PSCI approach, impedes its practical applications in 3D imaging. In this study, a three-dimensional (3D) susceptibility-based variable flip angle (vFA) FSE sequence was proposed to accelerate data acquisition in the clinical radiotherapy applications of ex vivo and in vivo rapid 3D PSCI for the imaging of metal seeds. Here, the proposed scheme applied a 3D modulated vFA technique for refocused imaging with an extended echo-train sequence for sampling data. The scheme integrated the projection-onto-dipole fields (PDF) to remove the background field and accelerate PSCI by using a compressive sensing framework with a variable-densitysampling mask. The experiments involved some gelatin phantoms, porcine tissues and patients with scapular tumors and brachytherapy seeds. All of the experimental results showed that the proposed scheme could accelerate data acquisition of 3D PSCI at the reduction factors of 2 ∼ 5 while accurately localizing the actual positions of the brachytherapy seeds in the ex vivo and in vivo applications. The results were compared with those of the existing methods, including susceptibility gradient mapping using the original resolution (SUMO) and gradient echo acquisition for superparamagnetic particle (GRASP).
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Affiliation(s)
- Caiyun Shi
- Paul C. Lauterbur Research Centre for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China; Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, Guangdong, China
| | - Zhilang Qiu
- Paul C. Lauterbur Research Centre for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China
| | - Congcong Liu
- Paul C. Lauterbur Research Centre for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China; Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, Guangdong, China
| | - Hanwei Chen
- Department of Radiology, Panyu Central Hospital, Guangzhou, China; Medical Imaging Institute of Panyu, Guangzhou, China
| | - Yufeng Ye
- Department of Radiology, Panyu Central Hospital, Guangzhou, China; Medical Imaging Institute of Panyu, Guangzhou, China
| | - Yanjie Zhu
- Paul C. Lauterbur Research Centre for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China
| | - Xin Liu
- Paul C. Lauterbur Research Centre for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China
| | - Hairong Zheng
- Paul C. Lauterbur Research Centre for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China
| | - Dong Liang
- Paul C. Lauterbur Research Centre for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China; Research Centre for Medical AI, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China.
| | - Haifeng Wang
- Paul C. Lauterbur Research Centre for Biomedical Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China.
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Wang H, Cai F, Shi C, Cheng J, Su S, Qiu Z, Xie G, Chen H, Liu X, Liang D. Positive Contrast Susceptibility MR Imaging Using GPU-based Primal-Dual Algorithm. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2020:1485-1488. [PMID: 33018272 DOI: 10.1109/embc44109.2020.9176223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The susceptibility-based positive contrast MR technique was applied to estimate arbitrary magnetic susceptibility distributions of the metallic devices using a kernel deconvolution algorithm with a regularized L-1 minimization. Previously, the first-order primal-dual (PD) algorithm could provide a faster reconstruction time to solve the L-1 minimization, compared with other methods. Here, we propose to accelerate the PD algorithm of the positive contrast image using the multi-core multi-thread feature of graphics processor units (GPUs). The some experimental results showed that the GPU-based PD algorithm could achieve comparable accuracy of the metallic interventional devices in positive contrast imaging with less computational time. And the GPU-based PD approach was 4~15 times faster than the previous CPU-based scheme.Clinical Relevance-This can estimate arbitrary magnetic susceptibility distributions of the metallic devices with the processing efficacy of 4~15 times faster than before.
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Shi C, Cheng J, Su S, Zou L, Chen H, Xie G, Liang D, Liu X, Wang H. Three Dimensional Positive Contrast Susceptibility Fast Spin Echo MR Imaging with Variable Excitation Pulses and PD Algorithm .. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2019:4824-4827. [PMID: 31946941 DOI: 10.1109/embc.2019.8856573] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
A susceptibility-based positive contrast MR technique is applied to image the MR compatible metallic devices by solving a regularized ℓ1 minimization problem. However, the previous SE/FSE sequence is used for the data acquisition which can result in high SAR and low sampling efficiency in 3D imaging. Therefore, a 3D single slab 3D FSE sequence with slab selective and variable excitation pulse is proposed to implement 3D positive contrast MR imaging for low SAR and acquiring high-resolution 3D images within a shorter timeframe. Furthermore, in order to achieve faster reconstruction and better imaging quality of the 3D positive contrast MRI, the primal-dual iteration algorithm is also used to solve the regularized ℓ1 minimization problem. The visualization of the positive contrast and convergence behaviour of the proposed reconstruction framework base on the first-order PD algorithm were tested and validated on phantom experiments, compared with the previous nonlinear conjugate gradient (NLCG), fast iterative soft thresholding (FISTA) and alternating direction method of multipliers (ADMM) algorithms.
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Shi C, Wang H, Xie G, Su S, Huang Y, Chen H, Liu X, Zheng H, Liang D. Susceptibility-based MR Imaging of Nitinol Stent .. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2019:5753-5756. [PMID: 31947159 DOI: 10.1109/embc.2019.8856775] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Conventional MR techniques have difficulty to accurately localize the stent position and access the stent restenosis because of the effects of susceptibility and radiofrequency (RF) shielding artifacts caused by stent mesh. Previous studies have demonstrated that a susceptibility-based positive contrast MR method exhibits excellent efficacy for visualizing MR compatible metal devices by taking advantage of their high magnetic susceptibility. However, the method is not evaluated in the visualization of stents. Therefore, the purpose of this study is to prospectively assess whether the susceptibility-based positive contrast method can be used to visualize the nitinol stents, with the comparison of two typical MR positive contrast techniques, i.e., susceptibility gradient mapping using the original resolution (SUMO) and the gradient echo acquisition for super-paramagnetic particles with positive contrast (GRASP). The experiment results showed that the susceptibility-based method provided better visualization and more precise localization of the stent than SUMO and GRASP.
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Nosrati R, Song WY, Wronski M, Pejović-Milić A, Morton G, Stanisz GJ. Feasibility of an MRI-only workflow for postimplant dosimetry of low-dose-rate prostate brachytherapy: Transition from phantoms to patients. Brachytherapy 2019; 18:863-874. [DOI: 10.1016/j.brachy.2019.06.004] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2019] [Revised: 06/12/2019] [Accepted: 06/20/2019] [Indexed: 12/14/2022]
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Dhulipala PV, Shi C, Xie G, Wang H, Ji JX. MARBLES - Metal Artifact Based Landmark Enhanced Susceptibility Weighted Imaging For Interventional Device Localization In MRI. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2019; 2018:2611-2614. [PMID: 30440943 DOI: 10.1109/embc.2018.8512739] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Susceptibility Weighted Imaging (SWI) is a method extensively studied for its application to improve contrast in MR imaging modality. The method enhances the visualization of magnetically susceptible content such as iron, calcium and zinc in the tissues by using the susceptibility differences in tissues to generate a unique image contrast. In this study, we propose an SWI based approach to improve the visualization of interventional devices in MRI data. Results obtained from two datasets (biopsy needle and brachytherapy seeds), indicate SWI to be suitable for visualization of the interventional devices, while also being computationally faster when compared with quantitative susceptibility mapping (QSM).
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Nosrati R, Paudel M, Ravi A, Pejovic-Milic A, Morton G, Stanisz GJ. Potential applications of the quantitative susceptibility mapping (QSM) in MR-guided radiation therapy. ACTA ACUST UNITED AC 2019; 64:145013. [DOI: 10.1088/1361-6560/ab2623] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Shi C, Cheng J, Xie G, Su S, Chang Y, Chen H, Liu X, Wang H, Liang D. Positive-contrast susceptibility imaging based on first-order primal-dual optimization. Magn Reson Med 2019; 82:1120-1128. [PMID: 31066102 DOI: 10.1002/mrm.27791] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2019] [Revised: 04/09/2019] [Accepted: 04/09/2019] [Indexed: 11/08/2022]
Abstract
PURPOSE To achieve faster reconstruction and better imaging quality of positive-contrast MRI based on the susceptibility mapping by incorporating a primal-dual (PD) formulation. METHODS The susceptibility-based positive contrast MR technique was applied to estimate arbitrary magnetic susceptibility distributions of the metallic devices using a kernel deconvolution algorithm with a regularized ℓ 1 minimization. The regularized positive-contrast inversion problem and its PD formulation were derived. The visualization of the positive contrast and convergence behavior of the PD algorithm were compared with those of the nonlinear conjugate gradient algorithm, fast iterative soft-thresholding algorithm, and alternating direction method of multipliers. These methods were tested and validated on computer simulations and phantom experiments. RESULTS The PD approach could provide a faster reconstruction time compared with other methods. Experimental results showed that the PD algorithm could achieve comparable or even better visualization and accuracy of the metallic interventional devices in positive-contrast imaging with different SNRs and orientations to the B0 field. CONCLUSION A susceptibility-based positive-contrast imaging technique by PD algorithm was proposed. The PD approach has more superior performance than other algorithms in terms of reconstruction time and accuracy for imaging the metallic interventional devices.
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Affiliation(s)
- Caiyun Shi
- Paul C. Lauterbur Research Centre for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Science, Shenzhen, Guangdong, China.,Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, China
| | - Jing Cheng
- Paul C. Lauterbur Research Centre for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Science, Shenzhen, Guangdong, China.,Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, China
| | - Guoxi Xie
- Department of Biomedical Engineering, Guangzhou Medical University, Guangzhou, China
| | - Shi Su
- Paul C. Lauterbur Research Centre for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Science, Shenzhen, Guangdong, China
| | - Yuchou Chang
- Computer Science and Engineering Technology Department, University of Houston-Downtown, Houston, Texas
| | - Hanwei Chen
- Department of Radiology, Guangzhou Panyu Central Hospital, Guangzhou, China
| | - Xin Liu
- Paul C. Lauterbur Research Centre for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Science, Shenzhen, Guangdong, China
| | - Haifeng Wang
- Paul C. Lauterbur Research Centre for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Science, Shenzhen, Guangdong, China
| | - Dong Liang
- Paul C. Lauterbur Research Centre for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Science, Shenzhen, Guangdong, China.,Medical AI Research Centre, Shenzhen Institutes of Advanced Technology, Chinese Academy of Science, Shenzhen, Guangdong, China
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Shi C, Xie G, Liang D, Wang H, Huang Y, Ren Y, Xue Y, Chen H, Su S, Liu X. Positive visualization of MR-compatible nitinol stent using a susceptibility-based imaging technique. Quant Imaging Med Surg 2019; 9:477-490. [PMID: 31032194 DOI: 10.21037/qims.2019.03.15] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Background MR-compatible metallic stents have been widely used for the treatment of arterial occlusive diseases. However, conventional MR techniques have difficulty in accurately localizing the stent position and access the stent restenosis because of the susceptibility and radiofrequency (RF) shielding artifacts caused by the stent mesh. Previous studies have demonstrated that a susceptibility-based positive contrast MR method exhibits excellent efficacy for visualizing MR compatible metal devices. However, the method had not been evaluated in the visualization of stents and for the assessment of stent restenosis. Methods The susceptibility-based positive contrast MR method was used to visualize the nitinol stents and assess the stent restenosis by comparing two typical MR positive contrast techniques, i.e., susceptibility gradient mapping using the original resolution (SUMO) and the gradient echo acquisition for super-paramagnetic particles (GRASP) with positive contrast. Results Three sets of experiments were respectively performed to investigate the influence of stent orientation and spatial resolution on the susceptibility-based method, and to demonstrate the feasibility of the susceptibility-based method in evaluating the stent restenosis comparing to the two typical MR positive contrast methods, GRASP and SUMO. Conclusions The susceptibility-based method provides better visualization and localization of the stent than SUMO and GRASP and has the capability of assessing the stent restenosis.
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Affiliation(s)
- Caiyun Shi
- Shenzhen Key Laboratory for MRI, Lauterbur Research Center for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Guoxi Xie
- Department of Radiology, The Six Affiliated Hospital, Guangzhou Medical University, Qingyuan 511518, China.,Department of Biomedical Engineering, Guangzhou Medical University, Guangzhou 511436, China
| | - Dong Liang
- Shenzhen Key Laboratory for MRI, Lauterbur Research Center for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Haifeng Wang
- Shenzhen Key Laboratory for MRI, Lauterbur Research Center for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Yi Huang
- Department of Radiology, Guangzhou Panyu Central Hospital, Guangzhou 511400, China
| | - Yanan Ren
- Department of Magnetic Resonance Imaging, The First Affiliated Hospital of Zhengzhou University, Zhengzhou 450052, China
| | - Yong Xue
- Department of Radiology, Guangzhou Panyu Central Hospital, Guangzhou 511400, China
| | - Hanwei Chen
- Department of Radiology, Guangzhou Panyu Central Hospital, Guangzhou 511400, China
| | - Shi Su
- Shenzhen Key Laboratory for MRI, Lauterbur Research Center for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Xin Liu
- Shenzhen Key Laboratory for MRI, Lauterbur Research Center for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
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Vafay Eslahi S, Ji J. Accelerated positive contrast MRI of interventional devices using parallel compressed sensing imaging. Magn Reson Imaging 2019; 60:130-136. [PMID: 31028791 DOI: 10.1016/j.mri.2019.04.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2018] [Revised: 04/04/2019] [Accepted: 04/06/2019] [Indexed: 11/24/2022]
Abstract
Susceptibility-based magnetic resonance imaging (MRI) method can image small MR-compatible devices with positive contrast. However, the relatively long data acquisition time required by the method hinders its practical applications. This study presents a parallel compressive sensing technique with a modified fast spin echo to accelerate data acquisition for the susceptibility-based positive contrast MRI. The method integrates the generalized autocalibrating partially parallel acquisitions and the compressive sensing techniques in the reconstruction algorithm. MR imaging data acquired from several phantoms containing interventional devices such as biopsy needles, stent, and brachytherapy seeds, used for validating the proposed technique. The results show that it can speed up data acquisition by a factor of about five while preserving the quality of the positive contrast images.
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Affiliation(s)
- Samira Vafay Eslahi
- Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX, USA
| | - Jim Ji
- Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX, USA.
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