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For: Jing X, Loskot P, Yu J. How does supercoiling regulation on a battery of RNA polymerases impact on bacterial transcription bursting? Phys Biol 2018;15:066007. [PMID: 30091721 DOI: 10.1088/1478-3975/aad933] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Number Cited by Other Article(s)
1
Junier I, Ghobadpour E, Espeli O, Everaers R. DNA supercoiling in bacteria: state of play and challenges from a viewpoint of physics based modeling. Front Microbiol 2023;14:1192831. [PMID: 37965550 PMCID: PMC10642903 DOI: 10.3389/fmicb.2023.1192831] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Accepted: 09/25/2023] [Indexed: 11/16/2023]  Open
2
A Novel Dynamical Regulation of mRNA Distribution by Cross-Talking Pathways. MATHEMATICS 2022. [DOI: 10.3390/math10091515] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/10/2022]
3
Wan B, Yu J. Two-phase dynamics of DNA supercoiling based on DNA polymer physics. Biophys J 2022;121:658-669. [PMID: 35016860 PMCID: PMC8873955 DOI: 10.1016/j.bpj.2022.01.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 10/11/2021] [Accepted: 01/05/2022] [Indexed: 11/28/2022]  Open
4
Zuo X, Chou T. Density- and elongation speed-dependent error correction in RNA polymerization. Phys Biol 2021;19. [PMID: 34937012 DOI: 10.1088/1478-3975/ac45e2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Accepted: 12/22/2021] [Indexed: 11/11/2022]
5
Klindziuk A, Kolomeisky AB. Understanding the molecular mechanisms of transcriptional bursting. Phys Chem Chem Phys 2021;23:21399-21406. [PMID: 34550142 DOI: 10.1039/d1cp03665c] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
6
Klindziuk A, Kolomeisky AB. Long-Range Supercoiling-Mediated RNA Polymerase Cooperation in Transcription. J Phys Chem B 2021;125:4692-4700. [PMID: 33913709 DOI: 10.1021/acs.jpcb.1c01859] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
7
Klindziuk A, Meadowcroft B, Kolomeisky AB. A Mechanochemical Model of Transcriptional Bursting. Biophys J 2020;118:1213-1220. [PMID: 32049059 DOI: 10.1016/j.bpj.2020.01.017] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2019] [Revised: 12/20/2019] [Accepted: 01/09/2020] [Indexed: 12/29/2022]  Open
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