Facilitating stochastic resonance as a pre-emphasis method for neural spike detection

A 2.2 nW Analog Electrocardiogram Processor based on Stochastic Resonance Achieving a 99.94% QRS Complex Detection Sensitivity

This paper presents an ultra-low power electrocardiogram (ECG) processor that can detect QRS-waves in real time as the data streams in. The processor performs out-of-band noise suppression via a linear filter, and in-band noise suppression via a nonlinear filter. The nonlinear filter also enhances the QRS-waves by facilitating stochastic resonance. The processor identifies the QRS-waves on noise-suppressed and enhanced recordings using a constant threshold detector. For energy-efficiency and compactness, the processor exploits current-mode analog signal processing techniques, which significantly reduces the design complexity when implementing the second-order dynamics of the nonlinear filter. The processor is designed and implemented in TSMC 65 nm CMOS technology. In terms of detection performance, the processor achieves an average F1 = 99.88% over the MIT-BIH Arrhythmia database and outperforms all previous ultra-low power ECG processors. The processor is the first that is validated against noisy ECG recordings of MIT-BIH NST and TELE databases, where it achieves better detection performances than most digital algorithms run on digital platforms. The design has a footprint of 0.08 mm² and dissipates 2.2 nW when supplied by a single 1V supply, making it the first ultra-low power and real-time processor that facilitates stochastic resonance.

A Stochastic Resonance P- and T-wave Detection Algorithm

An algorithm to detect P- and T-waves in an electrocardiogram (ECG) signal is presented. The algorithm has physical origins inspired by weak signal detection by leveraging stochastic resonance (SR) in a well potential. Specifically, a particle inside an underdamped monostable well is introduced with the ECG signal. The parameters defining the well and system characteristics are optimized towards enhancing the P-, R-, and T -waves while suppressing the other portions including noise-only sections. The enhanced features are detected by thresholding. Based on the performance obtained from the QT database, the algorithm achieves an average sensitivity of 99.97% for P-waves and an average sensitivity of 99.35% for T-waves, better than most P- and T-wave detection algorithms reported. Clinical Relevance- The proposed SR algorithm achieves high P- and T-wave detection performance and can potentially be integrated with implantable long-term cardiac monitors for patients experiencing rare symptoms without deteriorating the battery life.

From End to End: Gaining, Sorting, and Employing High-Density Neural Single Unit Recordings

The meaning behind neural single unit activity has constantly been a challenge, so it will persist in the foreseeable future. As one of the most sourced strategies, detecting neural activity in high-resolution neural sensor recordings and then attributing them to their corresponding source neurons correctly, namely the process of spike sorting, has been prevailing so far. Support from ever-improving recording techniques and sophisticated algorithms for extracting worthwhile information and abundance in clustering procedures turned spike sorting into an indispensable tool in electrophysiological analysis. This review attempts to illustrate that in all stages of spike sorting algorithms, the past 5 years innovations' brought about concepts, results, and questions worth sharing with even the non-expert user community. By thoroughly inspecting latest innovations in the field of neural sensors, recording procedures, and various spike sorting strategies, a skeletonization of relevant knowledge lays here, with an initiative to get one step closer to the original objective: deciphering and building in the sense of neural transcript.

A Stochastic Resonance Electrocardiogram Enhancement Algorithm for Robust QRS Detection

This study presents a new QRS detection algorithm making use of the background noise that is inevitably present in electrocardiogram (ECG) recordings. The algorithm suppresses noise, enhances the QRS-waves, and applies a threshold for QRS detection. Noise suppression and QRS enhancement are performed by a band-pass filter stage followed by a nonlinear stage based on the interaction of a particle inside an underdamped monostable potential well. The nonlinear stage maximizes the output when there is a QRS-wave and minimizes the output otherwise. One of the instruments that the nonlinear stage uses to enhance the QRS-waves is stochastic resonance, where the output is maximized for a non-zero intensity background noise. In terms of QRS-wave detection F1 score, which ranges from 98.87% to 99.99% on four major benchmarking databases (MIT-BIH Arrhythmia, QT, European ST-T, and MIT-BIH Noise Stress Test), the algorithm outperforms all existing ECG processing algorithms. The study, for the first time, demonstrates QRS-enhancement by facilitating stochastic resonance while suppressing in-band noise of ECG signals. Detecting QRS-waves as the ECG data streams, having a complexity of O(n), and not requiring any training data make the algorithm convenient for real-time ECG monitoring applications with limited computational resources.

Fast parametric curve matching (FPCM) for automatic spike detection

Epilepsy is a widely spread neurological disease, whose treatment often requires resection of the pathological cortical tissue. Interictal spike analysis observed in the non-invasively collected EEG or MEG data offers a way to localize epileptogenic cortical structures for surgery planning purposes. While a plethora of automatic spike detection techniques have been developed each with its own assumptions and limitations, non of them is ideal and the best results are achieved when the output of several automatic spike detectors are combined. This is especially true in the low signal-to-noise ratio conditions. To this end we propose a novel biomimetic approach for automatic spike detection based on a constrained mixed spline machinery that we dub as fast parametric curve matching (FPCM). Using the peak-wave shape parametrization, the constrained parametric morphological model is constructed and convolved with the observed multichannel data to very efficiently determine mixed spline parameters corresponding to each time-point in the dataset. Then the logical predicates that directly map to the expected interictal event morphology allow us to accomplish the spike detection task. The results of simulations mimicking typical low SNR scenario show the robustness and high ROC AUC values of the FPCM method as compared to the spike detection performed by the means of more conventional approaches such as wavelet decomposition, template matching or simple amplitude thresholding. Applied to the real MEG and EEG data from the human patients and to ECoG data from the rat, the FPCM technique demonstrates reliable detection of the interictal events and localization of epileptogenic zones concordant with independent conclusions made by the epileptologist. Since the FPCM is computationally light, tolerant to high amplitude artifacts and flexible to accommodate verbalized descriptions of the arbitrary target morphology, it may complement the existing arsenal of means for analysis of noisy interictal datasets.

Investigating well potential parameters on neural spike enhancement in a stochastic-resonance pre-emphasis algorithm

Objective.Background noise experienced during extracellular neural recording limits the number of spikes that can be reliably detected, which ultimately limits the performance of next-generation neuroscientific work. In this study, we aim to utilize stochastic resonance (SR), a technique that can help identify weak signals in noisy environments, to enhance spike detectability.Approach.Previously, an SR-based pre-emphasis algorithm was proposed, where a particle inside a 1D potential well is exerted by a force defined by the extracellular recording, and the output is obtained as the displacement of the particle. In this study, we investigate how the well shape and damping status impact the output signal-to-noise ratio (SNR). We compare the overdamped and underdamped solutions of shallow- and steep-wall monostable wells and bistable wells in terms of SNR improvement using two synthetic datasets. Then, we assess the spike detection performance when thresholding is applied on the output of the well shape-damping status configuration giving the best SNR enhancement.Main results.The SNR depends on the well-shape and damping-status type as well as the input noise level. The underdamped solution of the shallow-wall monostable well can yield to more than four orders of magnitude greater SNR improvement compared to other configurations for low noise intensities. Using this configuration also results in better spike detection sensitivity and positive predictivity than the state-of-the-art spike detection algorithms for a public synthetic dataset. For larger noise intensities, the overdamped solution of the steep-wall monostable well provides better spike enhancement than the others.Significance.The dependence of SNR improvement on the input signal noise level can be used to design a detector with multiple outputs, each more sensitive to a certain distance from the electrode. Such a detector can potentially enhance the performance of a successive spike sorting stage.