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Li P, Gao X, Li C, Yi C, Huang W, Si Y, Li F, Cao Z, Tian Y, Xu P. Granger Causal Inference Based on Dual Laplacian Distribution and Its Application to MI-BCI Classification. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2024; 35:16181-16195. [PMID: 37463076 DOI: 10.1109/tnnls.2023.3292179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/20/2023]
Abstract
Granger causality-based effective brain connectivity provides a powerful tool to probe the neural mechanism for information processing and the potential features for brain computer interfaces. However, in real applications, traditional Granger causality is prone to the influence of outliers, such as inevitable ocular artifacts, resulting in unreasonable brain linkages and the failure to decipher inherent cognition states. In this work, motivated by constructing the sparse causality brain networks under the strong physiological outlier noise conditions, we proposed a dual Laplacian Granger causality analysis (DLap-GCA) by imposing Laplacian distributions on both model parameters and residuals. In essence, the first Laplacian assumption on residuals will resist the influence of outliers in electroencephalogram (EEG) on causality inference, and the second Laplacian assumption on model parameters will sparsely characterize the intrinsic interactions among multiple brain regions. Through simulation study, we quantitatively verified its effectiveness in suppressing the influence of complex outliers, the stable capacity for model estimation, and sparse network inference. The application to motor-imagery (MI) EEG further reveals that our method can effectively capture the inherent hemispheric lateralization of MI tasks with sparse patterns even under strong noise conditions. The MI classification based on the network features derived from the proposed approach shows higher accuracy than other existing traditional approaches, which is attributed to the discriminative network structures being captured in a timely manner by DLap-GCA even under the single-trial online condition. Basically, these results consistently show its robustness to the influence of complex outliers and the capability of characterizing representative brain networks for cognition information processing, which has the potential to offer reliable network structures for both cognitive studies and future brain-computer interface (BCI) realization.
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Liu Y, Yu S, Li J, Ma J, Wang F, Sun S, Yao D, Xu P, Zhang T. Brain state and dynamic transition patterns of motor imagery revealed by the bayes hidden markov model. Cogn Neurodyn 2024; 18:2455-2470. [PMID: 39555271 PMCID: PMC11564432 DOI: 10.1007/s11571-024-10099-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 02/15/2024] [Accepted: 03/05/2024] [Indexed: 11/19/2024] Open
Abstract
Motor imagery (MI) is a high-level cognitive process that has been widely applied to brain-computer inference (BCI) and motor recovery. In practical applications, however, huge individual differences and unclear neural mechanisms have seriously hindered the application of MI and BCI systems. Thus, it is urgently needed to explore MI from a new perspective. Here, we applied a hidden Markov model (HMM) to explore the dynamic organization patterns of left- and right-hand MI tasks. Eleven distinct HMM states were identified based on MI-related EEG data. We found that these states can be divided into three metastates by clustering analysis, showing a highly organized structure. We also assessed the probability activation of each HMM state across time. The results showed that the state probability activation of task-evoked have similar trends to that of event-related desynchronization/synchronization (ERD/ERS). By comparing the differences in temporal features of HMM states between left- and right-hand MI, we found notable variations in fractional occupancy, mean life time, mean interval time, and transition probability matrix across stages and states. Interestingly, we found that HMM states activated in the left occipital lobe had higher occupancy during the left-hand MI task, and conversely, during the right-hand MI task, HMM states activated in the right occipital lobe had higher occupancy. Moreover, significant correlations were observed between BCI performance and features of HMM states. Taken together, our findings explored dynamic networks underlying the MI-related process and provided a complementary understanding of different MI tasks, which may contribute to improving the MI-BCI systems. Supplementary Information The online version contains supplementary material available at 10.1007/s11571-024-10099-9.
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Affiliation(s)
- Yunhong Liu
- Mental Health Education Center and School of Science, Xihua University, Chengdu, 610039 China
| | - Shiqi Yu
- Mental Health Education Center and School of Science, Xihua University, Chengdu, 610039 China
| | - Jia Li
- Mental Health Education Center and School of Science, Xihua University, Chengdu, 610039 China
| | - Jiwang Ma
- The Artificial Intelligence Group, Division of Frontier Research, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai, 519000 China
| | - Fei Wang
- School of Computer and Software, Chengdu Jincheng College, Chengdu, 610097 China
| | - Shan Sun
- Mental Health Education Center and School of Science, Xihua University, Chengdu, 610039 China
| | - Dezhong Yao
- MOE Key Laboratory for Neuroinformation, The Clinical Hospital of Chengdu Brain Science Institute, University of Electronic Science and Technology of China, Chengdu, 611731 China
| | - Peng Xu
- MOE Key Laboratory for Neuroinformation, The Clinical Hospital of Chengdu Brain Science Institute, University of Electronic Science and Technology of China, Chengdu, 611731 China
| | - Tao Zhang
- Mental Health Education Center and School of Science, Xihua University, Chengdu, 610039 China
- The Artificial Intelligence Group, Division of Frontier Research, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai, 519000 China
- MOE Key Laboratory for Neuroinformation, The Clinical Hospital of Chengdu Brain Science Institute, University of Electronic Science and Technology of China, Chengdu, 611731 China
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Ranjan R, Sahana BC. Multiresolution feature fusion for smart diagnosis of schizophrenia in adolescents using EEG signals. Cogn Neurodyn 2024; 18:2779-2807. [PMID: 39555262 PMCID: PMC11564624 DOI: 10.1007/s11571-024-10120-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2023] [Revised: 04/07/2024] [Accepted: 04/22/2024] [Indexed: 11/19/2024] Open
Abstract
Numerous studies on early detection of schizophrenia (SZ) have utilized all available channels or employed set of a few time domain or frequency domain features, while a limited number of features may not be sufficient enough to perform diagnosis efficiently. To encounter these problems, an automated diagnosis model is proposed for the efficient diagnosis of schizophrenia symptomatic adolescent subjects from electroencephalogram (EEG) signals via machine intelligence. A publicly accessible EEG dataset featuring 16-channels EEG obtained from 84 adolescents (45 SZ symptomatic and 39 healthy control) is used to demonstrate the work. Initially, the signals are decomposed into sub-bands using two multi-resolution signal analysis methods: Empirical Wavelet Transform and Empirical mode decomposition. 75 unique features from each sub-bands are extracted and the few selective prominent features are applied to machine learning classifiers for optimal sub-band selection. Subsequently, a hybrid model is proposed, combining convolutional neural network (CNN) and ensemble bagged tree, incorporating both deep learning and handcrafted features to perform SZ diagnosis. This innovative model achieved superior classification performance compared to existing methods, offering a promising approach for SZ diagnosis. Furthermore, the study explores the impact of different brain regions and combined regional data in SZ diagnosis comprehensively. Hence, this computer-assisted decision-making model minimizes the limitations of prior studies by providing a more robust and efficient diagnostic system for schizophrenia.
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Affiliation(s)
- Rakesh Ranjan
- Department of Electronics and Communication Engineering, National Institute of Technology Patna, Patna-, 800005 India
| | - Bikash Chandra Sahana
- Department of Electronics and Communication Engineering, National Institute of Technology Patna, Patna-, 800005 India
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Miao M, Yang Z, Sheng Z, Xu B, Zhang W, Cheng X. Multi-source deep domain adaptation ensemble framework for cross-dataset motor imagery EEG transfer learning. Physiol Meas 2024; 45:055024. [PMID: 38772402 DOI: 10.1088/1361-6579/ad4e95] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2023] [Accepted: 05/21/2024] [Indexed: 05/23/2024]
Abstract
Objective. Electroencephalography (EEG) is an important kind of bioelectric signal for measuring physiological activities of the brain, and motor imagery (MI) EEG has significant clinical application prospects. Convolutional neural network has become a mainstream algorithm for MI EEG classification, however lack of subject-specific data considerably restricts its decoding accuracy and generalization performance. To address this challenge, a novel transfer learning (TL) framework using auxiliary dataset to improve the MI EEG classification performance of target subject is proposed in this paper.Approach. We developed a multi-source deep domain adaptation ensemble framework (MSDDAEF) for cross-dataset MI EEG decoding. The proposed MSDDAEF comprises three main components: model pre-training, deep domain adaptation, and multi-source ensemble. Moreover, for each component, different designs were examined to verify the robustness of MSDDAEF.Main results. Bidirectional validation experiments were performed on two large public MI EEG datasets (openBMI and GIST). The highest average classification accuracy of MSDDAEF reaches 74.28% when openBMI serves as target dataset and GIST serves as source dataset. While the highest average classification accuracy of MSDDAEF is 69.85% when GIST serves as target dataset and openBMI serves as source dataset. In addition, the classification performance of MSDDAEF surpasses several well-established studies and state-of-the-art algorithms.Significance. The results of this study show that cross-dataset TL is feasible for left/right-hand MI EEG decoding, and further indicate that MSDDAEF is a promising solution for addressing MI EEG cross-dataset variability.
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Affiliation(s)
- Minmin Miao
- School of Information Engineering, Huzhou University, Huzhou, People's Republic of China
- Zhejiang Province Key Laboratory of Smart Management & Application of Modern Agricultural Resources, Huzhou University, Huzhou, People's Republic of China
| | - Zhong Yang
- School of Information Engineering, Huzhou University, Huzhou, People's Republic of China
| | - Zhenzhen Sheng
- School of Information Engineering, Huzhou University, Huzhou, People's Republic of China
- Zhejiang Province Key Laboratory of Smart Management & Application of Modern Agricultural Resources, Huzhou University, Huzhou, People's Republic of China
| | - Baoguo Xu
- School of Instrument Science and Engineering, Southeast University, Nanjing, People's Republic of China
| | - Wenbin Zhang
- College of Computer Science and Software Engineering, Hohai University, Nanjing, Jiangsu Province, People's Republic of China
| | - Xinmin Cheng
- School of Information Engineering, Huzhou University, Huzhou, People's Republic of China
- Zhejiang Province Key Laboratory of Smart Management & Application of Modern Agricultural Resources, Huzhou University, Huzhou, People's Republic of China
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Yang L, Tang Q, Chen Z, Zhang S, Mu Y, Yan Y, Xu P, Yao D, Li F, Li C. EEG based emotion recognition by hierarchical bayesian spectral regression framework. J Neurosci Methods 2024; 402:110015. [PMID: 38000636 DOI: 10.1016/j.jneumeth.2023.110015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 10/22/2023] [Accepted: 11/16/2023] [Indexed: 11/26/2023]
Abstract
Spectral regression (SR), a graph-based learning regression model, can be used to extract features from graphs to realize efficient dimensionality reduction. However, due to the SR method remains a regularized least squares problem and being defined in L2-norm space, the effect of artifacts in EEG signals cannot be efficiently resisted. In this work, to further improve the robustness of the graph-based regression models, we propose to utilize the prior distribution estimation in the Bayesian framework and develop a robust hierarchical Bayesian spectral regression framework (named HB-SR), which is designed with the hierarchical Bayesian ensemble strategies. In the proposed HB-SR, the impact of noises can be effectively reduced by the adaptive adjustment approach in model parameters with the data-driven manner. Specifically, in the current work, three different distributions have been elaborately designed to enhance the universality of the proposed HB-SR, i.e., Gaussian distribution, Laplace distribution, and Student-t distribution. To objectively evaluate the performance of the HB-SR framework, we conducted both simulation studies and emotion recognition experiments based on emotional EEG signals. Experimental results have consistently indicated that compared with other existing spectral regression methods, the proposed HB-SR can effectively suppress the influence of noises and achieve robust EEG emotion recognition.
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Affiliation(s)
- Lei Yang
- Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation and School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China
| | - Qi Tang
- Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation and School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China
| | - Zhaojin Chen
- Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation and School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China
| | - Shuhan Zhang
- Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation and School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China
| | - Yufeng Mu
- Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation and School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China
| | - Ye Yan
- Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation and School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China
| | - Peng Xu
- Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation and School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China
| | - Dezhong Yao
- Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation and School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China.
| | - Fali Li
- Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation and School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China.
| | - Cunbo Li
- Clinical Hospital of Chengdu Brain Science Institute, MOE Key Lab for Neuroinformation and School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China.
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Gao X, Zhang S, Liu K, Tan Z, Zhao G, Han Y, Cheng Y, Li C, Li F, Tian Y, Li P. An Adaptive Joint CCA-ICA Method for Ocular Artifact Removal and its Application to Emotion Classification. J Neurosci Methods 2023; 390:109841. [PMID: 36948359 DOI: 10.1016/j.jneumeth.2023.109841] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2023] [Revised: 03/10/2023] [Accepted: 03/19/2023] [Indexed: 03/24/2023]
Abstract
BACKGROUND The quality of Electroencephalogram (EEG) signals is critical for revealing the neural mechanism of emotions. However, ocular artifacts decreased the signal to noise ratio (SNR) and covered the inherent cognitive component of EEGs, which pose a great challenge in neuroscience research. NEW METHOD We proposed a novel unsupervised learning algorithm to adaptively remove the ocular artifacts by combining canonical correlation analysis (CCA), independent component analysis (ICA), higher-order statistics, empirical mode decomposition (EMD), and wavelet denoising techniques. Specifically, the combination of CCA and ICA aimed to improve the quality of source separation, while the higher-order statistics further located the source of ocular artifacts. Subsequently, these noised sources were further corrected by EMD and wavelet denoising to improve SNR of EEG signals. RESULTS We evaluated the performance of our proposed method with simulation studies and real EEG applications. The results of simulation study showed our proposed method could significantly improve the quality of signals under almost all noise conditions compared to four state-of-art methods. Consistently, the experiments of real EEG applications showed that the proposed methods could efficiently restrict the components of ocular artifacts and preserve the inherent information of cognition processing to improve the reliability of related analysis such as power spectral density (PSD) and emotion recognition. COMPARISON WITH EXISTING METHODS Our proposed model outperforms the comparative methods in EEG recovery, which further improve the application performance such as PSD analysis and emotion recognition. CONCLUSIONS The superior performance of our proposed method suggests that it is promising for removing ocular artifacts from EEG signals, which offers an efficient EEG preprocessing technology for the development of brain computer interface such as emotion recognition.
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Affiliation(s)
- Xiaohui Gao
- the School of Bioinformatics, Chongqing University of Posts and Telecommunications, Chongqing, 400065, China; Chongqing Institute for Brain and Intelligence, Guangyang Bay Laboratory, Chongqing 400064, China; Institute for Advanced Sciences, Chongqing University of Posts and Communications
| | - Shilai Zhang
- the Clinical Hospital of Chengdu Brain Science In-stitute, MOE Key Lab for Neuroinformation and School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Ke Liu
- the Chongqing University of Posts and Telecommunications Chongqing Key Laboratory of Computational Intelligence Chongqing, 400065, China
| | - Ziqin Tan
- the School of Bioinformatics, Chongqing University of Posts and Telecommunications, Chongqing, 400065, China; Chongqing Institute for Brain and Intelligence, Guangyang Bay Laboratory, Chongqing 400064, China; Institute for Advanced Sciences, Chongqing University of Posts and Communications
| | - Guanyi Zhao
- the School of Bioinformatics, Chongqing University of Posts and Telecommunications, Chongqing, 400065, China; Chongqing Institute for Brain and Intelligence, Guangyang Bay Laboratory, Chongqing 400064, China; Institute for Advanced Sciences, Chongqing University of Posts and Communications
| | - Yumeng Han
- the School of Bioinformatics, Chongqing University of Posts and Telecommunications, Chongqing, 400065, China; Chongqing Institute for Brain and Intelligence, Guangyang Bay Laboratory, Chongqing 400064, China; Institute for Advanced Sciences, Chongqing University of Posts and Communications
| | - Yue Cheng
- the Key Laboratory of Intelligent Analysis and Decision on Complex Systems, Chongqing University of Posts and Telecommunications, Chongqing, 400065, China
| | - Cunbo Li
- the Clinical Hospital of Chengdu Brain Science In-stitute, MOE Key Lab for Neuroinformation and School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Fali Li
- the Clinical Hospital of Chengdu Brain Science In-stitute, MOE Key Lab for Neuroinformation and School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 610054, China.
| | - Yin Tian
- the School of Bioinformatics, Chongqing University of Posts and Telecommunications, Chongqing, 400065, China; Chongqing Institute for Brain and Intelligence, Guangyang Bay Laboratory, Chongqing 400064, China; Institute for Advanced Sciences, Chongqing University of Posts and Communications.
| | - Peiyang Li
- the School of Bioinformatics, Chongqing University of Posts and Telecommunications, Chongqing, 400065, China; Chongqing Institute for Brain and Intelligence, Guangyang Bay Laboratory, Chongqing 400064, China; Institute for Advanced Sciences, Chongqing University of Posts and Communications.
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Gao X, Huang W, Liu Y, Zhang Y, Zhang J, Li C, Chelangat Bore J, Wang Z, Si Y, Tian Y, Li P. A novel robust Student’s t-based Granger causality for EEG based brain network analysis. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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