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Lahtinen J, Ronni P, Subramaniyam NP, Koulouri A, Wolters C, Pursiainen S. Standardized Kalman filtering for dynamical source localization of concurrent subcortical and cortical brain activity. Clin Neurophysiol 2024; 168:15-24. [PMID: 39423516 DOI: 10.1016/j.clinph.2024.09.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Revised: 08/16/2024] [Accepted: 09/21/2024] [Indexed: 10/21/2024]
Abstract
OBJECTIVE We introduce standardized Kalman filtering (SKF) as a new spatiotemporal method for tracking brain activity. Via the Kalman filtering scheme, the computational workload is low, and by spatiotemporal standardization, we reduce the depth bias of non-standardized Kalman filtering (KF). METHODS We describe the standardized KF methodology for spatiotemporal tracking from the Bayesian perspective. We construct a realistic simulation setup that resembles activity due to somatosensory evoked potential (SEP) to validate the proposed methodology before we run our tests using real SEP data. RESULTS In the experiments, SKF was compared with standardized low-resolution brain electromagnetic tomography (sLORETA) and the non-standardized KF. SKF localized the cortical and subcortical SEP originators appropriately and tracked P20/N20 originators for investigated signal-to-noise ratios (25, 15, and 5 dB). sLORETA distinguished those for 25 and 15 dB suppressing the subcortical originators. KF tracked only the evolution of cortical activity but mislocalized it. CONCLUSIONS The numerical results suggest that SKF inherits the estimation accuracy of sLORETA and traceability of KF while producing focal estimates for SEP originators. SIGNIFICANCE SKF could help study time-evolving brain activities and localize landmarks with a deep contributor or when there is no prior knowledge of evolution.
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Affiliation(s)
- Joonas Lahtinen
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland.
| | - Paavo Ronni
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland
| | | | - Alexandra Koulouri
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland.
| | - Carsten Wolters
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Münster 48149, Germany; Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster, Münster 48149, Germany.
| | - Sampsa Pursiainen
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland.
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Lahtinen J, Koulouri A, Rampp S, Wellmer J, Wolters C, Pursiainen S. Standardized hierarchical adaptive Lp regression for noise robust focal epilepsy source reconstructions. Clin Neurophysiol 2024; 159:24-40. [PMID: 38244372 DOI: 10.1016/j.clinph.2023.12.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 11/02/2023] [Accepted: 12/02/2023] [Indexed: 01/22/2024]
Abstract
OBJECTIVE To investigate the ability of standardization to reduce source localization errors and measurement noise uncertainties for hierarchical Bayesian algorithms with L1- and L2-norms as priors in electroencephalography and magnetoencephalography of focal epilepsy. METHODS Description of the standardization methodology relying on the Hierarchical Bayesian framework, referred to as the Standardized Hierarchical Adaptive Lp-norm Regularization (SHALpR). The performance was tested using real data from two focal epilepsy patients. Simulated data that resembled the available real data was constructed for further localization and noise robustness investigation. RESULTS The proposed algorithms were compared to their non-standardized counterparts, Standardized low-resolution brain electromagnetic tomography, Standardized Shrinking LORETA-FOCUSS, and Dynamic statistical parametric maps. Based on the simulations, the standardized Hierarchical adaptive algorithm using L2-norm was noise robust for 10 dB signal-to-noise ratio (SNR), whereas the L1-norm prior worked robustly also with 5 dB SNR. The accuracy of the standardized L1-normed methodology to localize focal activity was under 1 cm for both patients. CONCLUSIONS Numerical results of the proposed methodology display improved localization and noise robustness. The proposed methodology also outperformed the compared methods when dealing with real data. SIGNIFICANCE The proposed standardized methodology, especially when employing the L1-norm, could serve as a valuable assessment tool in surgical decision-making.
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Affiliation(s)
- Joonas Lahtinen
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland.
| | - Alexandra Koulouri
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland.
| | - Stefan Rampp
- Department of Neurosurgery, University Hospital Halle (Saale), Halle 06097, Germany; Department of Neurosurgery, University Hospital Erlangen, Erlangen 91054, Germany; Department of Neuroradiology, University Hospital Erlangen, Erlangen 91054, Germany.
| | - Jörg Wellmer
- Ruhr-Epileptology, Department of Neurology, University Hospital Knappschaftskrankenhaus, Ruhr-University, Bochum44892, Germany.
| | - Carsten Wolters
- Institute for Biomagnetism and Biosignalanalysis, University of Münster, Münster 48149, Germany; Otto Creutzfeldt Center for Cognitive and Behavioral Neuroscience, University of Münster, Münster 48149, Germany.
| | - Sampsa Pursiainen
- Faculty of Information Technology and Communication Sciences, Tampere University, Tampere 33720, Finland.
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Lahtinen J, Moura F, Samavaki M, Siltanen S, Pursiainen S. In silicostudy of the effects of cerebral circulation on source localization using a dynamical anatomical atlas of the human head. J Neural Eng 2023; 20. [PMID: 36808911 DOI: 10.1088/1741-2552/acbdc1] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Accepted: 02/21/2023] [Indexed: 02/23/2023]
Abstract
Objective.This study focuses on the effects of dynamical vascular modeling on source localization errors in electroencephalography (EEG). Our aim of thisin silicostudy is to (a) find out the effects of cerebral circulation on the accuracy of EEG source localization estimates, and (b) evaluate its relevance with respect to measurement noise and interpatient variation.Approach.We employ a four-dimensional (3D + T) statistical atlas of the electrical properties of the human head with a cerebral circulation model to generate virtual patients with different cerebral circulatory conditions for EEG source localization analysis. As source reconstruction techniques, we use the linearly constraint minimum variance (LCMV) beamformer, standardized low-resolution brain electromagnetic tomography (sLORETA), and the dipole scan (DS).Main results.Results indicate that arterial blood flow affects source localization at different depths and with varying significance. The average flow rate plays an important role in source localization performance, while the pulsatility effects are very small. In cases where a personalized model of the head is available, blood circulation mismodeling causes localization errors, especially in the deep structures of the brain where the main cerebral arteries are located. When interpatient variations are considered, the results show differences up to 15 mm for sLORETA and LCMV beamformer and 10 mm for DS in the brainstem and entorhinal cortices regions. In regions far from the main arteries vessels, the discrepancies are smaller than 3 mm. When measurement noise is added and interpatient differences are considered in a deep dipolar source, the results indicate that the effects of conductivity mismatch are detectable even for moderate measurement noise. The signal-to-noise ratio limit for sLORETA and LCMV beamformer is 15 dB, while the limit is under 30 dB for DS.Significance.Localization of the brain activity via EEG constitutes an ill-posed inverse problem, where any modeling uncertainty, e.g. a slight amount of noise in the data or material parameter discrepancies, can lead to a significant deviation of the estimated activity, especially in the deep structures of the brain. Proper modeling of the conductivity distribution is necessary in order to obtain an appropriate source localization. In this study, we show that the conductivity of the deep brain structures is particularly impacted by blood flow-induced changes in conductivity because large arteries and veins access the brain through that region.
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Affiliation(s)
- Joonas Lahtinen
- Computing Sciences Unit, Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Finland
| | - Fernando Moura
- Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland.,Engineering, Modelling and Applied Social Sciences Center, Federal University of ABC, São Bernardo do Campo, São Paulo, Brazil
| | - Maryam Samavaki
- Computing Sciences Unit, Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Finland
| | - Samuli Siltanen
- Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland
| | - Sampsa Pursiainen
- Computing Sciences Unit, Faculty of Information Technology and Communication Sciences, Tampere University, Tampere, Finland
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Kim KY, Lee JY, Moon JU, Eom TH, Kim YH. Comparative analysis of background EEG activity based on MRI findings in neonatal hypoxic-ischemic encephalopathy: a standardized, low-resolution, brain electromagnetic tomography (sLORETA) study. BMC Neurol 2022; 22:204. [PMID: 35659637 PMCID: PMC9164875 DOI: 10.1186/s12883-022-02736-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Accepted: 05/30/2022] [Indexed: 11/10/2022] Open
Abstract
Abstract
Background
It is important to assess the degree of brain injury and predict long-term outcomes in neonates diagnosed with hypoxic-ischemic encephalopathy (HIE). However, routine studies, including magnetic resonance imaging (MRI) and conventional encephalography (EEG) or amplitude-integrated EEG (aEEG), have their own limitations in terms of availability and accuracy of evaluation. Recently, quantitative EEG (qEEG) has been shown to improve the predictive reliability of neonatal HIE and has been further refined with brain mapping techniques.
Methods
We investigated background EEG activities in 29 neonates with HIE who experienced therapeutic hypothermia, via qEEG using a distributed source model. MRI images were evaluated and classified into two groups (normal-to-mild injury vs moderate-to-severe injury), based on a scoring system. Non-parametric statistical analysis using standardized low-resolution brain electromagnetic tomography was performed to compare the current density distribution of four frequency bands (delta, theta, alpha, and beta) between the two groups.
Results
Electrical neuronal activities were significantly lower in the moderate-to-severe injury group compared with the normal-to-mild injury group. Background EEG activities in moderate-to-severe HIE were most significantly reduced in the temporal and parietal lobes. Quantitative EEG also revealed a decrease in background activity at all frequency bands, with a maximum in decrease in the delta component. The maximum difference in current density was found in the inferior parietal lobule of the right parietal lobe for the delta frequency band.
Conclusions
Our study demonstrated quantitative and topographical changes in EEG in moderate-to-severe neonatal HIE. They also suggest possible implementation and evaluation of conventional EEG and aEEG in neonatal HIE. The findings have implications as biomarkers in the assessment of neonatal HIE.
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Moon JU, Lee JY, Kim KY, Eom TH, Kim YH, Lee IG. Comparative analysis of background EEG activity in juvenile myoclonic epilepsy during valproic acid treatment: a standardized, low-resolution, brain electromagnetic tomography (sLORETA) study. BMC Neurol 2022; 22:48. [PMID: 35139806 PMCID: PMC8827290 DOI: 10.1186/s12883-022-02577-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Accepted: 01/31/2022] [Indexed: 11/11/2022] Open
Abstract
Background By definition, the background EEG is normal in juvenile myoclonic epilepsy (JME) patients and not accompanied by other developmental and cognitive problems. However, some recent studies using quantitative EEG (qEEG) reported abnormal changes in the background activity. QEEG investigation in patients undergoing anticonvulsant treatment might be a useful approach to explore the electrophysiology and anticonvulsant effects in JME. Methods We investigated background EEG activity changes in patients undergoing valproic acid (VPA) treatment using qEEG analysis in a distributed source model. In 17 children with JME, non-parametric statistical analysis using standardized low-resolution brain electromagnetic tomography was performed to compare the current density distribution of four frequency bands (delta, theta, alpha, and beta) between untreated and treated conditions. Results VPA reduced background EEG activity in the low-frequency (delta-theta) bands across the frontal, parieto-occipital, and limbic lobes (threshold log-F-ratio = ±1.414, p < 0.05; threshold log-F-ratio= ±1.465, p < 0.01). In the delta band, comparative analysis revealed significant current density differences in the occipital, parietal, and limbic lobes. In the theta band, the analysis revealed significant differences in the frontal, occipital, and limbic lobes. The maximal difference was found in the delta band in the cuneus of the left occipital lobe (log-F-ratio = −1.840) and the theta band in the medial frontal gyrus of the left frontal lobe (log-F-ratio = −1.610). Conclusions This study demonstrated the anticonvulsant effects on the neural networks involved in JME. In addition, these findings suggested the focal features and the possibility of functional deficits in patients with JME.
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Affiliation(s)
- Ja-Un Moon
- Department of Pediatrics, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
| | - Joo-Young Lee
- Department of Pediatrics, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
| | - Kwang-Yeon Kim
- Department of Pediatrics, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
| | - Tae-Hoon Eom
- Department of Pediatrics, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea.
| | - Young-Hoon Kim
- Department of Pediatrics, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
| | - In-Goo Lee
- Department of Pediatrics, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
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Sadat-Nejad Y, Beheshti S. Efficient high resolution sLORETA in brain source localization. J Neural Eng 2021; 18. [DOI: 10.1088/1741-2552/abcc48] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Accepted: 11/19/2020] [Indexed: 11/12/2022]
Abstract
Abstract
Objective. Estimation of the source location within the brain from electroencephalography (EEG) and magnetoencephalography measures is a challenging task. Among the existing techniques in the field, which are known as brain imaging methods, standardized low-resolution brain electromagnetic tomography (sLORETA) is the most popular method due to its simplicity and high accuracy. However, in this work we illustrate that sLORETA is still noisy and the additive noise is causing the blurry image. The existing pre-fixed/manual thresholding process after sLORETA can partially take care of denoising. However, this ad-hoc theresholding can either remove so much of the desired data or leave much of the noise in the process. Manual correction to avoid such extreme cases can be time-consuming. The objective of this paper is to automate the denoising process in the form of adaptive thresholding. Approach. The proposed method, denoted by efficient high-resolution sLORETA (EHR-sLORETA), is based on minimizing the error between the desired denoised source and the source estimates. Main results. The approach is evaluated using synthetic EEG and real EEG data. spatial dispersion (SD), and mean square error (MSE) are used as metrics to provide the quantitative performance of the method. In addition, qualitative analysis of the method is provided for real EEG data. This proposed model demonstrates advantages over the existing methods in sense of accuracy and robustness with SD and MSE comparison. Significance. EHR-sLORETA could have a significant impact on clinical studies with source estimation task, as it improves the accuracy of source estimation and eliminates the need for manual thresholding.
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Li MA, Wang YF, Jia SM, Sun YJ, Yang JF. Decoding of motor imagery EEG based on brain source estimation. Neurocomputing 2019. [DOI: 10.1016/j.neucom.2019.02.006] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Vivas AB, Paraskevopoulos E, Castillo A, Fuentes LJ. Neurophysiological Activations of Predictive and Non-predictive Exogenous Cues: A Cue-Elicited EEG Study on the Generation of Inhibition of Return. Front Psychol 2019; 10:227. [PMID: 30800091 PMCID: PMC6376955 DOI: 10.3389/fpsyg.2019.00227] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Accepted: 01/23/2019] [Indexed: 11/13/2022] Open
Abstract
In cueing tasks, predictive and non-predictive exogenous spatial cues produce distinct patterns of behavioral effects. Although both cues initially attract attention, only non-predictive cues lead to inhibitory effects (worse performance at the cued location as compared to the uncued location) if the time elapsed between the cue and the target is long enough. However, the process/processes leading to the later inhibitory effect, named inhibition of return (IOR), are still under debate. In the present study, we used cue-elicited EEG activations from predictive and non-predictive exogenous spatial cues to further investigate the neural processes involved in IOR. Unlike previous similar studies, we intermixed both types of cues in a block of trials, in an attempt to identify the unique neurophysiological activations associated with the generation of IOR. We found that predictive and non-predictive cues significantly differed in activation just at 400-470 ms post-cue window. Activation was greater for non-predictive cues in the intraparietal sulcus (IPS), and this activation correlated significantly with IOR effects. These findings support the hypothesis that the posterior parietal cortex plays a crucial role in the generation of IOR.
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Affiliation(s)
- Ana B Vivas
- Psychology Department, The University of Sheffield International Faculty, City College, Thessaloniki, Greece
| | - Evangelos Paraskevopoulos
- Psychology Department, The University of Sheffield International Faculty, City College, Thessaloniki, Greece.,Medical Physics Laboratory, School of Medicine, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Alejandro Castillo
- Department of Basic Psychology and Methodology, University of Murcia, Murcia, Spain
| | - Luis J Fuentes
- Department of Basic Psychology and Methodology, University of Murcia, Murcia, Spain
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