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For: Langmead CJ, Yan AK, McClung CR, Donald BR. Phase-independent rhythmic analysis of genome-wide expression patterns. J Comput Biol 2004;10:521-36. [PMID: 12935342 DOI: 10.1089/10665270360688165] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
Number Cited by Other Article(s)
1
Majumder A, Sarkar M, Sharma P. A Composite Mode Differential Gene Regulatory Architecture based on Temporal Expression Profiles. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2019;16:1785-1793. [PMID: 29993888 DOI: 10.1109/tcbb.2018.2828418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
2
Iuchi H, Sugimoto M, Tomita M. MICOP: Maximal information coefficient-based oscillation prediction to detect biological rhythms in proteomics data. BMC Bioinformatics 2018;19:249. [PMID: 29954316 PMCID: PMC6025708 DOI: 10.1186/s12859-018-2257-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2017] [Accepted: 06/20/2018] [Indexed: 11/10/2022]  Open
3
Ostaszewski M, Eifes S, del Sol A. Evolutionary conservation and network structure characterize genes of phenotypic relevance for mitosis in human. PLoS One 2012;7:e36488. [PMID: 22577488 PMCID: PMC3342260 DOI: 10.1371/journal.pone.0036488] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2011] [Accepted: 04/07/2012] [Indexed: 11/19/2022]  Open
4
Transcriptome phase distribution analysis reveals diurnal regulated biological processes and key pathways in rice flag leaves and seedling leaves. PLoS One 2011;6:e17613. [PMID: 21407816 PMCID: PMC3047585 DOI: 10.1371/journal.pone.0017613] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2010] [Accepted: 02/01/2011] [Indexed: 12/04/2022]  Open
5
Yang R, Su Z. Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation. Bioinformatics 2010;26:i168-74. [PMID: 20529902 PMCID: PMC2881374 DOI: 10.1093/bioinformatics/btq189] [Citation(s) in RCA: 134] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
6
Pyne S, Gutman R, Kim CS, Futcher B. Phase Coupled Meta-analysis: sensitive detection of oscillations in cell cycle gene expression, as applied to fission yeast. BMC Genomics 2009;10:440. [PMID: 19761608 PMCID: PMC2753555 DOI: 10.1186/1471-2164-10-440] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2009] [Accepted: 09/17/2009] [Indexed: 11/10/2022]  Open
7
Duffield G, Loros JJ, Dunlap JC. Analysis of circadian output rhythms of gene expression in Neurospora and mammalian cells in culture. Methods Enzymol 2008;393:315-41. [PMID: 15817297 DOI: 10.1016/s0076-6879(05)93014-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
8
Chen J, Chang KC. Discovering Statistically Significant Periodic Gene Expression. Int Stat Rev 2008. [DOI: 10.1111/j.1751-5823.2008.00048.x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
9
Gauthier NP, Larsen ME, Wernersson R, de Lichtenberg U, Jensen LJ, Brunak S, Jensen TS. Cyclebase.org--a comprehensive multi-organism online database of cell-cycle experiments. Nucleic Acids Res 2007;36:D854-9. [PMID: 17940094 PMCID: PMC2238932 DOI: 10.1093/nar/gkm729] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
10
Leung E, Bushel PR. PAGE: phase-shifted analysis of gene expression. Bioinformatics 2005;22:367-8. [PMID: 16322047 DOI: 10.1093/bioinformatics/bti778] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]  Open
11
Glynn EF, Chen J, Mushegian AR. Detecting periodic patterns in unevenly spaced gene expression time series using Lomb-Scargle periodograms. ACTA ACUST UNITED AC 2005;22:310-6. [PMID: 16303799 DOI: 10.1093/bioinformatics/bti789] [Citation(s) in RCA: 130] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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