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Bleker de Oliveira M, Koshkin V, Liu G, Krylov SN. Analytical Challenges in Development of Chemoresistance Predictors for Precision Oncology. Anal Chem 2020; 92:12101-12110. [PMID: 32790291 DOI: 10.1021/acs.analchem.0c02644] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Chemoresistance, i.e., tumor insensitivity to chemotherapy, shortens life expectancy of cancer patients. Despite the availability of new treatment options, initial systemic regimens for solid tumors are dominated by a set of standard chemotherapy drugs, and alternative therapies are used only when a patient has demonstrated chemoresistance clinically. Chemoresistance predictors use laboratory parameters measured on tissue samples to predict the patient's response to chemotherapy and help to avoid application of chemotherapy to chemoresistant patients. Despite thousands of publications on putative chemoresistance predictors, there are only about a dozen predictors that are sufficiently accurate for precision oncology. One of the major reasons for inaccuracy of predictors is inaccuracy of analytical methods utilized to measure their laboratory parameters: an inaccurate method leads to an inaccurate predictor. The goal of this study was to identify analytical challenges in chemoresistance-predictor development and suggest ways to overcome them. Here we describe principles of chemoresistance predictor development via correlating a clinical parameter, which manifests disease state, with a laboratory parameter. We further classify predictors based on the nature of laboratory parameters and analyze advantages and limitations of different predictors using the reliability of analytical methods utilized for measuring laboratory parameters as a criterion. Our eventual focus is on predictors with known mechanisms of reactions involved in drug resistance (drug extrusion, drug degradation, and DNA damage repair) and using rate constants of these reactions to establish accurate and robust laboratory parameters. Many aspects and conclusions of our analysis are applicable to all types of disease biomarkers built upon the correlation of clinical and laboratory parameters.
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Affiliation(s)
- Mariana Bleker de Oliveira
- Department of Chemistry and Centre for Research on Biomolecular Interactions, York University, Toronto M3J 1P3, Canada
| | - Vasilij Koshkin
- Department of Chemistry and Centre for Research on Biomolecular Interactions, York University, Toronto M3J 1P3, Canada
| | - Geoffrey Liu
- Department of Medicine, Medical Oncology, Princess Margaret Cancer Centre, Toronto M5G 2M9, Canada
| | - Sergey N Krylov
- Department of Chemistry and Centre for Research on Biomolecular Interactions, York University, Toronto M3J 1P3, Canada
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Micsik T, Lőrincz A, Mersich T, Baranyai Z, Besznyák I, Dede K, Zaránd A, Jakab F, Szöllösi LK, Kéri G, Schwab R, Peták I. Decreased functional activity of multidrug resistance protein in primary colorectal cancer. Diagn Pathol 2015; 10:26. [PMID: 25885226 PMCID: PMC4415444 DOI: 10.1186/s13000-015-0264-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2014] [Accepted: 04/07/2015] [Indexed: 01/04/2023] Open
Abstract
Background The ATP-Binding Cassette (ABC)-transporter MultiDrug Resistance Protein 1 (MDR1) and Multidrug Resistance Related Protein 1 (MRP1) are expressed on the surface of enterocytes, which has led to the belief that these high capacity transporters are responsible for modulating chemosensitvity of colorectal cancer. Several immunohistochemistry and reverse transcription polymerase chain reaction (RT-PCR) studies have provided controversial results in regards to the expression levels of these two ABC-transporters in colorectal cancer. Our study was designed to determine the yet uninvestigated functional activity of MDR1 and MRP1 transporters in normal human enterocytes compared to colorectal cancer cells from surgical biopsies. Methods 100 colorectal cancer and 28 adjacent healthy mucosa samples were obtained by intraoperative surgical sampling. Activity of MDR1 and MRP1 of viable epithelial and cancer cells were determined separately with the modified calcein-assay for multidrug resistance activity and sufficient data of 73 cancer and 11 healthy mucosa was analyzed statistically. Results Significantly decreased mean MDR1 activity was found in primary colorectal cancer samples compared to normal mucosa, while mean MRP1 activity showed no significant change. Functional activity was not affected by gender, age, stage or grade and localization of the tumor. Conclusion We found lower MDR activity in cancer cells versus adjacent, apparently, healthy control tissue, thus, contrary to general belief, MDR activity seems not to play a major role in primary drug resistance, but might rather explain preferential/selective activity of Irinotecan and/or Oxaliplatin. Still, this picture might be more complex since chemotherapy by itself might alter MDR activity, and furthermore, today limited data is available about MDR activity of cancer stem cells in colorectal cancers. Virtual slides The virtual slide(s) for this article can be found here: http://www.diagnosticpathology.diagnomx.eu/vs/1675739129145824
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Affiliation(s)
- Tamás Micsik
- 1st Department of Pathology and Experimental Cancer Research, Semmelweis University, Üllői út 26, H-1085, Budapest, Hungary. .,Rational Drug Design Laboratories, Cooperative Research Center, Semmelweis University, Üllői út 26, H-1085, Budapest, Hungary.
| | - András Lőrincz
- Rational Drug Design Laboratories, Cooperative Research Center, Semmelweis University, Üllői út 26, H-1085, Budapest, Hungary. .,Hungarian Academy of Sciences,Research Centre of Natural Sciences, Institute of Molecular Pharmacology, Department of Biological Nanochemistry, Pusztaszeri út 59-67, 1025, Budapest, Hungary.
| | - Tamás Mersich
- Department of Surgery and Vascular Surgery, Uzsoki Teaching Hospital, Uzsoki street 29, H-1145, Budapest, Hungary.
| | - Zsolt Baranyai
- Tumorgenetika Human Biospecimen Collection and Research, Kerékgyártó u. 36-38, H-1147, Budapest, Hungary. .,1st Department of Surgery, Semmelweis University, Üllői út 78, 1082, Budapest, Hungary.
| | - István Besznyák
- Department of Surgery and Vascular Surgery, Uzsoki Teaching Hospital, Uzsoki street 29, H-1145, Budapest, Hungary.
| | - Kristóf Dede
- Department of Surgery and Vascular Surgery, Uzsoki Teaching Hospital, Uzsoki street 29, H-1145, Budapest, Hungary.
| | - Attila Zaránd
- Department of Surgery and Vascular Surgery, Uzsoki Teaching Hospital, Uzsoki street 29, H-1145, Budapest, Hungary. .,1st Department of Surgery, Semmelweis University, Üllői út 78, 1082, Budapest, Hungary.
| | - Ferenc Jakab
- Department of Surgery and Vascular Surgery, Uzsoki Teaching Hospital, Uzsoki street 29, H-1145, Budapest, Hungary.
| | | | - György Kéri
- Rational Drug Design Laboratories, Cooperative Research Center, Semmelweis University, Üllői út 26, H-1085, Budapest, Hungary. .,MTA-SE Pathobiochemistry Research Group, Department of Medical Chemistry, Semmelweis University, Tűzoltó utca 37-47, H-1094, Budapest, Hungary.
| | - Richard Schwab
- Rational Drug Design Laboratories, Cooperative Research Center, Semmelweis University, Üllői út 26, H-1085, Budapest, Hungary. .,KPS Medical Biotechnology and Healthcare Services Ltd., Retek utca. 34, H-1022, Budapest, Hungary.
| | - István Peták
- Rational Drug Design Laboratories, Cooperative Research Center, Semmelweis University, Üllői út 26, H-1085, Budapest, Hungary. .,MTA-SE Pathobiochemistry Research Group, Department of Medical Chemistry, Semmelweis University, Tűzoltó utca 37-47, H-1094, Budapest, Hungary. .,KPS Medical Biotechnology and Healthcare Services Ltd., Retek utca. 34, H-1022, Budapest, Hungary.
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Koshkin V, Krylov SN. Correlation between multi-drug resistance-associated membrane transport in clonal cancer cells and the cell cycle phase. PLoS One 2012; 7:e41368. [PMID: 22848474 PMCID: PMC3405118 DOI: 10.1371/journal.pone.0041368] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2012] [Accepted: 06/20/2012] [Indexed: 02/07/2023] Open
Abstract
Multidrug resistance driven by ABC membrane transporters is one of the major reasons for treatment failure in human malignancy. Some limited evidence has previously been reported on the cell cycle dependence of ABC transporter expression. However, it has never been demonstrated that the functional activity of these transporters correlates with the cell cycle position. Here, we studied the rate of intrinsic ABC transport in different phases of the cell cycle in cultured MCF-7 breast cancer cells. The rate was characterized in terms of the efflux kinetics from cells loaded with an ABC transporter substrate. As averaging the kinetics over a cell population could lead to errors, we studied kinetics of ABC transport at the single-cell level. We found that the rate of ABC transport in MCF-7 cells could be described by Michaelis-Menten kinetics with two classical parameters, V(max) and K(M). Each of these parameters showed similar unimodal distributions with different positions of maxima for cell subpopulations in the 2c and 4c states. Compared to the 2c cells, the 4c cells exhibited greater V(max) values, indicating a higher activity of transport. They also exhibited a greater V(max)/K(M) ratio, indicating a higher efficiency of transport. Our findings suggest that cell cycle-related modulation of MDR may need to be taken into account when designing chemotherapy regimens which include cytostatic agents.
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Affiliation(s)
- Vasilij Koshkin
- Centre for Research on Biomolecular Interactions, York University, Toronto, Ontario, Canada
| | - Sergey N. Krylov
- Centre for Research on Biomolecular Interactions, York University, Toronto, Ontario, Canada
- * E-mail:
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