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van der Graaf CM, Sánchez-España J, Ilin AM, Yusta I, Stams AJM, Sánchez-Andrea I. Micrometric pyrite catalyzes abiotic sulfidogenesis from elemental sulfur and hydrogen. Sci Rep 2024; 14:17702. [PMID: 39085257 PMCID: PMC11291890 DOI: 10.1038/s41598-024-66006-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Accepted: 06/26/2024] [Indexed: 08/02/2024] Open
Abstract
Hydrogen sulfide (H2S) in environments with temperatures below 100 °C is generally assumed to be of microbial origin, while abiotic H2S production is typically restricted to higher temperatures (T). In this study, we report an abiotic process for sulfidogenesis through the reduction of elemental sulfur (S0) by hydrogen (H2), mediated by pyrite (FeS2). The process was investigated in detail at pH 4 and 80 °C, but experimental conditions ranged between 40 and 80 °C and pH 4-6. The experiments were conducted with H2 as reducing molecule, and µm-sized spherical (but not framboidal) pyrite particles that formed in situ from the H2S, S0 and Fe2+ present in the experiments. Fe monosulfides, likely mackinawite, were identified as potential pyrite precursors. The absence of H2 production in controls, combined with geochemical modelling, suggests that pyrite formation occurred through the polysulfide pathway, which is unexpected under acidic conditions. Most spherical aggregates of authigenic pyrite were composed of nanometric, acicular crystals oriented in diverse directions, displaying varying degrees of organization. Although it was initially hypothesized that the catalytic properties were related to the surface structure, commercially sourced, milled pyrite particles (< 50 μm) mediated H2S production at comparable rates. This suggests that the catalytic properties of pyrite depend on particle size rather than surface structure, requiring pyrite surfaces to act as electron shuttles between S0 and H2.
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Affiliation(s)
- Charlotte M van der Graaf
- Laboratory of Microbiology, Wageningen University, Stippeneng 4, 6708 WE, Wageningen, The Netherlands.
- Faculty of Civil Engineering and Geoscience, Department of Geoscience and Engineering, Delft University of Technology, Stevinweg 1, 2628CN, Delft, The Netherlands.
| | - Javier Sánchez-España
- Planetary Geology Research Group, Department of Planetology and Habitability, Centro de Astrobiología (CAB, CSIC-INTA), 28850, Torrejón de Ardoz, Madrid, Spain.
| | - Andrey M Ilin
- Department of Geology, University of the Basque Country (UPV/EHU), Apdo. 644, 48080, Bilbao, Spain
| | - Iñaki Yusta
- Department of Geology, University of the Basque Country (UPV/EHU), Apdo. 644, 48080, Bilbao, Spain
| | - Alfons J M Stams
- Laboratory of Microbiology, Wageningen University, Stippeneng 4, 6708 WE, Wageningen, The Netherlands
- Centre of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal
| | - Irene Sánchez-Andrea
- Laboratory of Microbiology, Wageningen University, Stippeneng 4, 6708 WE, Wageningen, The Netherlands.
- Department of Environmental Sciences for Sustainability, IE University, C. Cardenal Zúñiga, 12, 40003, Segovia, Spain.
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Zhang X, Lu C, Tian J, Zeng L, Wang Y, Sun W, Han H, Kang J. Artificial intelligence optimization and controllable slow-release iron sulfide realizes efficient separation of copper and arsenic in strongly acidic wastewater. J Environ Sci (China) 2024; 139:293-307. [PMID: 38105056 DOI: 10.1016/j.jes.2023.05.038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Revised: 05/16/2023] [Accepted: 05/28/2023] [Indexed: 12/19/2023]
Abstract
Iron sulfide (FeS) is a promising material for separating copper and arsenic from strongly acidic wastewater due to its S2- slow-release effect. However, uncertainties arise because of the constant changes in wastewater composition, affecting the selection of operating parameters and FeS types. In this study, the aging method was first used to prepare various controllable FeS nanoparticles to weaken the arsenic removal ability without affecting the copper removal. Orthogonal experiments were conducted, and the results identified the Cu/As ratio, H2SO4 concentration, and FeS dosage as the three main factors influencing the separation efficiency. The backpropagation artificial neural network (BP-ANN) model was established to determine the relationship between the influencing factors and the separation efficiency. The correlation coefficient (R) of overall model was 0.9923 after optimizing using genetic algorithm (GA). The BP-GA model was also solved using GA under specific constraints, predicting the best solution for the separation process in real-time. The predicted results show that the high temperature and long aging time of FeS were necessary to gain high separation efficiency, and the maximum separation factor can reached 1,400. This study provides a suitable sulfurizing material and a set of methods and models with robust flexibility that can successfully predict the separation efficiency of copper and arsenic from highly acidic environments.
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Affiliation(s)
- Xingfei Zhang
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
| | - Chenglong Lu
- Centre for Mined Land Rehabilitation, Sustainable Minerals Institute, The University of Queensland, Brisbane 4072, Australia
| | - Jia Tian
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
| | - Liqiang Zeng
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
| | - Yufeng Wang
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
| | - Wei Sun
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
| | - Haisheng Han
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China.
| | - Jianhua Kang
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China
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Huang XL. What are the inorganic nanozymes? Artificial or inorganic enzymes! NEW J CHEM 2022. [DOI: 10.1039/d2nj02088b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The research on inorganic nanozymes remains very active since the first paper on the “intrinsic peroxidase-like properties of ferromagnetic nanoparticles” was published in Nature Nanotechnology in 2007. However, there is...
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Chin K, Pasalic J, Hermis N, Barge LM. Chemical Gardens as Electrochemical Systems: In Situ Characterization of Simulated Prebiotic Hydrothermal Vents by Impedance Spectroscopy. Chempluschem 2021; 85:2619-2628. [PMID: 33270995 DOI: 10.1002/cplu.202000600] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Revised: 11/17/2020] [Indexed: 11/05/2022]
Abstract
In an early earth or planetary chimney systems, hydrothermal fluid chemistry and flow durations play a large role in the chimney's ability to drive electrochemical reactions for the origin of life. We performed continuous electrochemical impedance spectroscopy (EIS) characterization on inorganic membranes representing prebiotic hydrothermal chimney vents in natural seafloor systems, by incorporating an electrode array into a chimney growth experiment. Localized potential and capacitances profiles in the chimney reveal a dynamic system where redox processes are driven by transport phenomena, increasing rapidly due to disequilibrium until achieving equilibrium at about 100 mV and 1000 μF/cm2 . The impedance in the chimney interior is three orders of magnitude lower (100 Ohms/cm2 vs 100 KOhms/cm2 ) than at the ocean or the ocean/chimney interface. The calculated peak dissipation factor (DF) values are more than ten times higher (40.0 vs 3.0) and also confirm the elevated chemical reactivity in the chimney interior.
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Affiliation(s)
- Keith Chin
- NASA Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Drive, Pasadena, CA, 91109, USA
| | - Jasmina Pasalic
- NASA Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Drive, Pasadena, CA, 91109, USA
| | - Ninos Hermis
- NASA Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Drive, Pasadena, CA, 91109, USA
| | - Laura M Barge
- NASA Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Drive, Pasadena, CA, 91109, USA
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Yao Y, Mi N, He C, He H, Zhang Y, Zhang Y, Yin L, Li J, Yang S, Li S, Ni L. Humic acid modified nano-ferrous sulfide enhances the removal efficiency of Cr(VI). Sep Purif Technol 2020. [DOI: 10.1016/j.seppur.2020.116623] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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West T, Sojo V, Pomiankowski A, Lane N. The origin of heredity in protocells. Philos Trans R Soc Lond B Biol Sci 2018; 372:rstb.2016.0419. [PMID: 29061892 PMCID: PMC5665807 DOI: 10.1098/rstb.2016.0419] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/25/2017] [Indexed: 12/27/2022] Open
Abstract
Here we develop a computational model that examines one of the first major biological innovations-the origin of heredity in simple protocells. The model assumes that the earliest protocells were autotrophic, producing organic matter from CO2 and H2 Carbon fixation was facilitated by geologically sustained proton gradients across fatty acid membranes, via iron-sulfur nanocrystals lodged within the membranes. Thermodynamic models suggest that organics formed this way should include amino acids and fatty acids. We assume that fatty acids partition to the membrane. Some hydrophobic amino acids chelate FeS nanocrystals, producing three positive feedbacks: (i) an increase in catalytic surface area; (ii) partitioning of FeS nanocrystals to the membrane; and (iii) a proton-motive active site for carbon fixing that mimics the enzyme Ech. These positive feedbacks enable the fastest-growing protocells to dominate the early ecosystem through a simple form of heredity. We propose that as new organics are produced inside the protocells, the localized high-energy environment is more likely to form ribonucleotides, linking RNA replication to its ability to drive protocell growth from the beginning. Our novel conceptualization sets out conditions under which protocell heredity and competition could arise, and points to where crucial experimental work is required.This article is part of the themed issue 'Process and pattern in innovations from cells to societies'.
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Affiliation(s)
- Timothy West
- Department of Genetics, Evolution and Environment, University College London, Gower Street, London WC1E 6BT, UK.,Centre for Computation, Mathematics and Physics in the Life Sciences and Experimental Biology (CoMPLEX), University College London, Gower Street, London WC1E 6BT, UK
| | - Victor Sojo
- Department of Genetics, Evolution and Environment, University College London, Gower Street, London WC1E 6BT, UK.,Centre for Computation, Mathematics and Physics in the Life Sciences and Experimental Biology (CoMPLEX), University College London, Gower Street, London WC1E 6BT, UK.,Systems Biophysics, Faculty of Physics, Ludwig-Maximilian University of Munich, Amalienstr. 54, 80799 Munich, Germany
| | - Andrew Pomiankowski
- Department of Genetics, Evolution and Environment, University College London, Gower Street, London WC1E 6BT, UK.,Centre for Computation, Mathematics and Physics in the Life Sciences and Experimental Biology (CoMPLEX), University College London, Gower Street, London WC1E 6BT, UK
| | - Nick Lane
- Department of Genetics, Evolution and Environment, University College London, Gower Street, London WC1E 6BT, UK .,Centre for Computation, Mathematics and Physics in the Life Sciences and Experimental Biology (CoMPLEX), University College London, Gower Street, London WC1E 6BT, UK
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Russell MJ, Nitschke W. Methane: Fuel or Exhaust at the Emergence of Life? ASTROBIOLOGY 2017; 17:1053-1066. [PMID: 28949766 PMCID: PMC5655419 DOI: 10.1089/ast.2016.1599] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2016] [Accepted: 03/20/2017] [Indexed: 05/28/2023]
Abstract
As many of the methanogens first encountered at hydrothermal vents were thermophilic to hyperthermophilic and comprised one of the lower roots of the evolutionary tree, it has been assumed that methanogenesis was one of the earliest, if not the earliest, pathway to life. It being well known that hydrothermal springs associated with serpentinization also bore abiotic methane, it had been further assumed that emergent biochemistry merely adopted and quickened this supposed serpentinization reaction. Yet, recent hydrothermal experiments simulating serpentinization have failed to generate methane so far, thus casting doubt on this assumption. The idea that the inverse view is worthy of debate, that is, that methanotrophy was the earlier, is stymied by the "fact" that methanotrophy itself has been termed "reverse methanogenesis," so allotting the methanogens the founding pedigree. Thus, attempting to suggest instead that methanogenesis might be termed reverse methanotrophy would require "unlearning"-a challenge to the subconscious! Here we re-examine the "impossibility" of methanotrophy predating methanogenesis as in what we have termed the "denitrifying methanotrophic acetogenic pathway." Advantages offered by such thinking are that methane would not only be a fuel but also a ready source of reduced carbon to combine with formate or carbon monoxide-available in hydrothermal fluids-to generate acetate, a target molecule of the first autotrophs. And the nitrate/nitrite required for the putative oxidation of methane with activated NO would also be a ready source of fixed nitrogen for amination reactions. Theoretical conditions for such a putative pathway would be met in a hydrothermal green rust-bearing exhalative pile and associated chimneys subject to proton and electron counter gradients. This hypothesis could be put to test in a high-pressure hydrothermal reaction chamber in which a cool carbonate/nitrate/nitrite-bearing early acidulous ocean simulant is juxtaposed across a precipitate membrane to an alkaline solution of hydrogen and methane. Key Words: Green rust-Methanotrophy-Nitrate reduction-Emergence of life. Astrobiology 17, 1053-1066.
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Affiliation(s)
- Michael J. Russell
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California
| | - Wolfgang Nitschke
- CNRS/Aix-Marseille University, BIP UMR 7281, IMM FR 3479, Marseille, France
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Barge LM, White LM. Experimentally Testing Hydrothermal Vent Origin of Life on Enceladus and Other Icy/Ocean Worlds. ASTROBIOLOGY 2017; 17:820-833. [PMID: 28836818 DOI: 10.1089/ast.2016.1633] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
We review various laboratory strategies and methods that can be utilized to simulate prebiotic processes and origin of life in hydrothermal vent systems on icy/ocean worlds. Crucial steps that could be simulated in the laboratory include simulations of water-rock chemistry (e.g., serpentinization) to produce hydrothermal fluids, the types of mineral catalysts and energy gradients produced in vent interfaces where hydrothermal fluids interface with the surrounding seawater, and simulations of biologically relevant chemistry in flow-through gradient systems (i.e., far-from-equilibrium experiments). We describe some examples of experimental designs in detail, which are adaptable and could be used to test particular hypotheses about ocean world energetics or mineral/organic chemistry. Enceladus among the ocean worlds provides an ideal test case, since the pressure at the ocean floor is more easily simulated in the lab. Results for Enceladus could be extrapolated with further experiments and modeling to understand other ocean worlds. Key Words: Enceladus-Ocean worlds-Icy worlds-Hydrothermal vent-Iron sulfide-Gradient. Astrobiology 17, 820-833.
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Affiliation(s)
- Laura M Barge
- NASA Jet Propulsion Laboratory, California Institute of Technology , Pasadena, California
| | - Lauren M White
- NASA Jet Propulsion Laboratory, California Institute of Technology , Pasadena, California
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9
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Camprubi E, Jordan SF, Vasiliadou R, Lane N. Iron catalysis at the origin of life. IUBMB Life 2017; 69:373-381. [PMID: 28470848 DOI: 10.1002/iub.1632] [Citation(s) in RCA: 71] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2017] [Accepted: 03/24/2017] [Indexed: 01/29/2023]
Abstract
Iron-sulphur proteins are ancient and drive fundamental processes in cells, notably electron transfer and CO2 fixation. Iron-sulphur minerals with equivalent structures could have played a key role in the origin of life. However, the 'iron-sulphur world' hypothesis has had a mixed reception, with questions raised especially about the feasibility of a pyrites-pulled reverse Krebs cycle. Phylogenetics suggests that the earliest cells drove carbon and energy metabolism via the acetyl CoA pathway, which is also replete in Fe(Ni)S proteins. Deep differences between bacteria and archaea in this pathway obscure the ancestral state. These differences make sense if early cells depended on natural proton gradients in alkaline hydrothermal vents. If so, the acetyl CoA pathway diverged with the origins of active ion pumping, and ancestral CO2 fixation might have been equivalent to methanogens, which depend on a membrane-bound NiFe hydrogenase, energy converting hydrogenase. This uses the proton-motive force to reduce ferredoxin, thence CO2 . The mechanism suggests that pH could modulate reduction potential at the active site of the enzyme, facilitating the difficult reduction of CO2 by H2 . This mechanism could be generalised under abiotic conditions so that steep pH differences across semi-conducting Fe(Ni)S barriers drives not just the first steps of CO2 fixation to C1 and C2 organics such as CO, CH3 SH and CH3 COSH, but a series of similar carbonylation and hydrogenation reactions to form longer chain carboxylic acids such as pyruvate, oxaloacetate and α-ketoglutarate, as in the incomplete reverse Krebs cycle found in methanogens. We suggest that the closure of a complete reverse Krebs cycle, by regenerating acetyl CoA directly, displaced the acetyl CoA pathway from many modern groups. A later reliance on acetyl CoA and ATP eliminated the need for the proton-motive force to drive most steps of the reverse Krebs cycle. © 2017 IUBMB Life, 69(6):373-381, 2017.
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Affiliation(s)
- Eloi Camprubi
- Department of Genetics, Evolution and Environment, University College London, London, UK
| | - Sean F Jordan
- Department of Genetics, Evolution and Environment, University College London, London, UK
| | - Rafaela Vasiliadou
- Department of Genetics, Evolution and Environment, University College London, London, UK
| | - Nick Lane
- Department of Genetics, Evolution and Environment, University College London, London, UK
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Barge LM, Branscomb E, Brucato JR, Cardoso SSS, Cartwright JHE, Danielache SO, Galante D, Kee TP, Miguel Y, Mojzsis S, Robinson KJ, Russell MJ, Simoncini E, Sobron P. Thermodynamics, Disequilibrium, Evolution: Far-From-Equilibrium Geological and Chemical Considerations for Origin-Of-Life Research. ORIGINS LIFE EVOL B 2017; 47:39-56. [PMID: 27271006 DOI: 10.1007/s11084-016-9508-z] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2016] [Accepted: 04/19/2016] [Indexed: 10/21/2022]
Affiliation(s)
- L M Barge
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, 91125, USA.
- Icy Worlds Team, NASA Astrobiology Institute, Mountain View, CA, 94043, USA.
| | - E Branscomb
- Carl R. Woese Institute for Genomic Biology, University of Illinois, Urbana-Champaign, Champaign, IL, USA
| | - J R Brucato
- Astrophysical Observatory of Arcetri, Florence, Italy
| | - S S S Cardoso
- Department of Chemical Engineering and Biotechnology, University of Cambridge, Pembroke Street, Cambridge, CB2 3RA, UK
| | - J H E Cartwright
- Instituto Andaluz de Ciencias de la Tierra, CSIC-Universidad de Granada, E-18100 Armilla, Granada, Spain
- Instituto Carlos I de Física Teórica y Computacional, Universidad de Granada, E-18071, Granada, Spain
| | - S O Danielache
- Sophia University, Tokyo, Japan
- Earth and Life Science Institute, Tokyo Technical University, Tokyo, Japan
| | - D Galante
- Brazilian Synchrotron Light Laboratory, LNLS / CNPEM, Campinas, Brazil
| | - T P Kee
- School of Chemistry, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK
| | - Y Miguel
- Observatoire de Côte d'Azur, Nice, France
| | - S Mojzsis
- Department of Geological Sciences, University of Colorado, Boulder, CO, 80309-0399, USA
| | - K J Robinson
- School of Molecular Sciences and School of Earth & Space Exploration, Arizona State University, Tempe, AZ, 85287, USA
| | - M J Russell
- NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, 91125, USA
- Icy Worlds Team, NASA Astrobiology Institute, Mountain View, CA, 94043, USA
| | - E Simoncini
- Astrophysical Observatory of Arcetri, Florence, Italy
| | - P Sobron
- Carl Sagan Center, SETI Institute, Mountain View, CA, USA
- Impossible Sensing, St. Louis, MO, USA
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Lan Y, Elwood Madden AS, Butler EC. Transformation of mackinawite to greigite by trichloroethylene and tetrachloroethylene. ENVIRONMENTAL SCIENCE. PROCESSES & IMPACTS 2016; 18:1266-1273. [PMID: 27711891 DOI: 10.1039/c6em00461j] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Trichloroethylene (TCE) and tetrachloroethylene (PCE) are common ground water contaminants susceptible to reductive dechlorination by FeS (mackinawite) in anaerobic environments. The objective of this study was to characterize the mineral-associated products that form when mackinawite reacts with TCE and PCE. The dissolved products of the reaction included Cl- and Fe2+, and trace amounts of cis 1,2-dichloroethylene (for TCE) and TCE (for PCE). Selected area electron diffraction (SAED) analysis identified greigite as a mackinawite oxidation product formed after reaction between TCE or PCE and FeS over seven weeks. Release of Fe2+ is consistent with the solid state transformation of mackinawite to greigite, resulting in depletion of the solid with Fe. X-ray photoelectron spectroscopy of the sulfur 2p peak showed a shift to a higher binding energy after FeS reacted with TCE or PCE, also observed in other studies of mackinawite oxidation to greigite. The results may help efforts to maintain the reactivity of FeS generated to remediate chlorinated aliphatic contaminants in ground water.
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Affiliation(s)
- Ying Lan
- School of Civil Engineering and Environmental Science, University of Oklahoma, Norman, Oklahoma 73019, USA.
| | | | - Elizabeth C Butler
- School of Civil Engineering and Environmental Science, University of Oklahoma, Norman, Oklahoma 73019, USA.
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