1
|
Han B, Liu J, Zhu R, Chen Q. Clay minerals inhibit the release of Cd(II) during the phase transformation of Cd(II)-ferrihydrite coprecipitates. JOURNAL OF HAZARDOUS MATERIALS 2024; 462:132723. [PMID: 37827108 DOI: 10.1016/j.jhazmat.2023.132723] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Revised: 09/15/2023] [Accepted: 10/03/2023] [Indexed: 10/14/2023]
Abstract
Clay minerals and iron (hydr)oxides are important geosorbents in controlling the migration of heavy metal cations in the environment. Despite the widespread occurrence of clay minerals/iron (hydr)oxides composites, their complex mutual effects on the fate of heavy metal cations are not well recognized. In this work, we investigated the effect of clay minerals on the redistribution of Cd(II) during the phase transformation of ferrihydrite containing coprecipitated Cd(II) (Cd-Fh). Three systems were considered: i.e., Cd-Fh, Cd-Fh/kaolinite composite, and Cd-Fh/montmorillonite composite. Our results showed that the transformation of Fh into goethite and hematite caused the release of Cd(II), while the presence of kaolinite and montmorillonite inhibited the phase transformation of Fh and the release of Cd(II), with montmorillonite being more effective in these process. Multiple factors contributed to the reduced release of Cd(II), including the retarded transformation of Fh, the buffering of solution pH, and the re-adsorption of the released Cd(II). Our findings show that clay minerals have multiple effects in reducing the release of heavy metal cations from Fh during its transformation process, which sheds new light on understanding the critical roles of nanominerals in modulating the migration and bioavailability of heavy metal cations in the environment.
Collapse
Affiliation(s)
- Bin Han
- CAS Key Laboratory of Mineralogy and Metallogeny/Guangdong Provincial Key Laboratory of Mineral Physics and Materials, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences (CAS), Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China; University of Chinese Academy of Science, Beijing 100049, China
| | - Jing Liu
- State Key Laboratory of Lunar and Planetary Sciences, Macau University of Science and Technology, Taipa 999078, Macau.
| | - Runliang Zhu
- CAS Key Laboratory of Mineralogy and Metallogeny/Guangdong Provincial Key Laboratory of Mineral Physics and Materials, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences (CAS), Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China; University of Chinese Academy of Science, Beijing 100049, China
| | - Qingze Chen
- CAS Key Laboratory of Mineralogy and Metallogeny/Guangdong Provincial Key Laboratory of Mineral Physics and Materials, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences (CAS), Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China; University of Chinese Academy of Science, Beijing 100049, China.
| |
Collapse
|
2
|
Salinity Impact on Composition and Activity of Nitrate-Reducing Fe(II)-Oxidizing Microorganisms in Saline Lakes. Appl Environ Microbiol 2022; 88:e0013222. [PMID: 35499328 DOI: 10.1128/aem.00132-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Nitrate-reducing Fe(II)-oxidizing (NRFeOx) microorganisms contribute to nitrogen, carbon, and iron cycling in freshwater and marine ecosystems. However, NRFeOx microorganisms have not been investigated in hypersaline lakes, and their identity, as well as their activity in response to salinity, is unknown. In this study, we combined cultivation-based most probable number (MPN) counts with Illumina MiSeq sequencing to analyze the abundance and community compositions of NRFeOx microorganisms enriched from five lake sediments with different salinities (ranging from 0.67 g/L to 346 g/L). MPN results showed that the abundance of NRFeOx microorganisms significantly (P < 0.05) decreased with increasing lake salinity, from 7.55 × 103 to 8.09 cells/g dry sediment. The community composition of the NRFeOx enrichment cultures obtained from the MPNs differed distinctly among the five lakes and clustered with lake salinity. Two stable enrichment cultures, named FeN-EHL and FeN-CKL, were obtained from microcosm incubations of sediment from freshwater Lake Erhai and hypersaline Lake Chaka. The culture FeN-EHL was dominated by genus Gallionella (68.4%), while the culture FeN-CKL was dominated by genus Marinobacter (71.2%), with the former growing autotrophically and the latter requiring an additional organic substrate (acetate) and Fe(II) oxidation, caused to a large extent by chemodenitrification [reaction of nitrite with Fe(II)]. Short-range ordered Fe(III) (oxyhydr)oxides were the product of Fe(II) oxidation, and the cells were partially attached to or encrusted by the formed iron minerals in both cultures. In summary, different types of interactions between Fe(II) and nitrate-reducing bacteria may exist in freshwater and hypersaline lakes, i.e., autotrophic NRFeOx and chemodenitrification in freshwater and hypersaline environments, respectively. IMPORTANCE NRFeOx microorganisms are globally distributed in various types of environments and play a vital role in iron transformation and nitrate and heavy metal removal. However, most known NRFeOx microorganisms were isolated from freshwater and marine environments, while their identity and activity under hypersaline conditions remain unknown. Here, we demonstrated that salinity may affect the abundance, identity, and nutrition modes of NRFeOx microorganisms. Autotrophy was only detectable in a freshwater lake but not in the saline lake investigated. We enriched a mixotrophic culture capable of nitrate-reducing Fe(II) oxidation from hypersaline lake sediments. However, Fe(II) oxidation was probably caused by abiotic nitrite reduction (chemodenitrification) rather than by a biologically mediated process. Consequently, our study suggests that in hypersaline environments, Fe(II) oxidation is largely caused by chemodentrification initiated by nitrite formation by chemoheterotrophic bacteria, and additional experiments are needed to demonstrate whether or to what extent Fe(II) is enzymatically oxidized.
Collapse
|
3
|
Ghori NUH, Wise MJ, Whiteley AS. Temporal Microbial Community Dynamics Within a Unique Acid Saline Lake. Front Microbiol 2021; 12:649594. [PMID: 34248867 PMCID: PMC8264302 DOI: 10.3389/fmicb.2021.649594] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Accepted: 06/04/2021] [Indexed: 11/13/2022] Open
Abstract
Lake Magic is an extremely acidic, hypersaline lake found in Western Australia, with the highest concentrations of aluminum and silica in the world. Previous studies of Lake Magic diversity have revealed that the lake hosts acid- and halotolerant bacterial and fungal species. However, they have not canvassed microbial population dynamics across flooding, evapo-concentration and desiccation stages. In this study, we used amplicon sequencing and potential function prediction on sediment and salt mat samples. We observed that the bacterial and fungal diversity in Lake Magic is strongly driven by carbon, temperature, pH and salt concentrations at the different stages of the lake. We also saw that the fungal diversity decreased as the environmental conditions became more extreme. However, prokaryotic diversity was very dynamic and bacteria dominated archaeal species, both in abundance and diversity, perhaps because bacteria better tolerate the extreme variation in conditions. Bacterial species diversity was the highest during early flooding stage and decreased during more stressful conditions. We observed an increase in acid tolerant and halotolerant species in the sediment, involved in functions such as sulfur and iron metabolism, i.e., species involved in buffering the external environment. Thus, due to activity within the microbial community, the environmental conditions in the sediment do not change to the same degree as conditions in the salt mat, resulting in the sediment becoming a safe haven for microbes, which are able to thrive during the extreme conditions of the evapo-concentration and desiccation stages.
Collapse
Affiliation(s)
- Noor-Ul-Huda Ghori
- School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia.,The Marshall Centre of Infectious Diseases, School of Biological Sciences, The University of Western Australia, Perth, WA, Australia
| | - Michael J Wise
- The Marshall Centre of Infectious Diseases, School of Biological Sciences, The University of Western Australia, Perth, WA, Australia.,Department of Computer Science and Engineering, The University of Western Australia, Perth, WA, Australia
| | - Andrew S Whiteley
- School of Agriculture and Environment, The University of Western Australia, Perth, WA, Australia.,Centre for Environment and Life Sciences, CSIRO Land Water, Perth, WA, Australia
| |
Collapse
|
4
|
Ibrar M, Ullah MW, Manan S, Farooq U, Rafiq M, Hasan F. Fungi from the extremes of life: an untapped treasure for bioactive compounds. Appl Microbiol Biotechnol 2020; 104:2777-2801. [DOI: 10.1007/s00253-020-10399-0] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Revised: 01/02/2020] [Accepted: 01/20/2020] [Indexed: 01/01/2023]
|
5
|
Aerts JW, van Spanning RJM, Flahaut J, Molenaar D, Bland PA, Genge MJ, Ehrenfreund P, Martins Z. Microbial Communities in Sediments From Four Mildly Acidic Ephemeral Salt Lakes in the Yilgarn Craton (Australia) - Terrestrial Analogs to Ancient Mars. Front Microbiol 2019; 10:779. [PMID: 31133990 PMCID: PMC6512757 DOI: 10.3389/fmicb.2019.00779] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2018] [Accepted: 03/27/2019] [Indexed: 11/24/2022] Open
Abstract
The Yilgarn Craton in Australia has a large number of naturally occurring shallow ephemeral lakes underlain by a dendritic system of paleodrainage channels. Processes like evaporation, flooding, erosion, as well as inflow of saline, often acidic and ion-rich groundwater contribute to the (dynamic) nature of the lakes and the composition of the sediments. The region has previously been described as an analog environment for early Mars due to its geological and geophysical similarities. Here, we investigated sediment samples of four lake environments aimed at getting a fundamental understanding of the native microbial communities and the mineralogical and (bio)chemical composition of the sediments they are associated with. The dominant mineral phases in the sediments were quartz, feldspars and amphiboles, while halite and gypsum were the only evaporites detected. Element analysis revealed a rich and complex image, in which silicon, iron, and aluminum were the dominant ions, but relative high concentrations of trace elements such as strontium, chromium, zirconium, and barium were also found. The concentrations of organic carbon, nitrogen, and phosphorus were generally low. 16S amplicon sequencing on the Illumina platform showed the presence of diverse microbial communities in all four lake environments. We found that most of the communities were dominated by extremely halophilic Archaea of the Halobacteriaceae family. The dynamic nature of these lakes appears to influence the biological, biochemical, and geological components of the ecosystem to a large effect. Inter- and intra-lake variations in the distributions of microbial communities were significant, and could only to a minor degree be explained by underlying environmental conditions. The communities are likely significantly influenced by small scale local effects caused by variations in geological settings and dynamic interactions caused by aeolian transport and flooding and evaporation events.
Collapse
Affiliation(s)
- Joost W Aerts
- Department of Molecular Cell Biology, Vrije Universiteit Amsterdam, Amsterdam, Netherlands
| | - Rob J M van Spanning
- Department of Molecular Cell Biology, Vrije Universiteit Amsterdam, Amsterdam, Netherlands
| | - Jessica Flahaut
- Centre de Recherches Pétrographiques et Géochimiques, Centre National de la Recherche Scientifique/Université de Lorraine, Vandœuvre-lès-Nancy, France
| | - Douwe Molenaar
- Department of Molecular Cell Biology, Vrije Universiteit Amsterdam, Amsterdam, Netherlands
| | - Phil A Bland
- Department of Applied Geology, Curtin University, Perth, WA, Australia
| | - Matt J Genge
- Department of Earth Science and Engineering, Faculty of Engineering, Imperial College London, London, United Kingdom
| | - Pascale Ehrenfreund
- Leiden Observatory, Leiden University, Leiden, Netherlands.,Space Policy Institute, Elliott School of International Affairs, George Washington University, Washington, DC, United States
| | - Zita Martins
- Centro de Química-Física Molecular-Institute of Nanoscience and Nanotechnology (CQFM-IN), Institute for Bioengineering and Biosciences (iBB), Departamento de Engenharia Química, Instituto Superior Técnico (IST), Universidade de Lisboa, Lisbon, Portugal
| |
Collapse
|
6
|
Zaikova E, Benison KC, Mormile MR, Johnson SS. Microbial communities and their predicted metabolic functions in a desiccating acid salt lake. Extremophiles 2018; 22:367-379. [PMID: 29350297 DOI: 10.1007/s00792-018-1000-4] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2017] [Accepted: 01/02/2018] [Indexed: 11/30/2022]
Abstract
The waters of Lake Magic in Western Australia are among the most geochemically extreme on Earth. This ephemeral saline lake is characterized by pH as low as 1.6 salinity as high as 32% total dissolved solids, and unusually complex geochemistry, including extremely high concentrations of aluminum, silica, and iron. We examined the microbial composition and putative function in this extreme acid brine environment by analyzing lake water, groundwater, and sediment samples collected during the austral summer near peak evapoconcentration. Our results reveal that the lake water metagenome, surprisingly, was comprised of mostly eukaryote sequences, particularly fungi and to a lesser extent, green algae. Groundwater and sediment samples were dominated by acidophilic Firmicutes, with eukaryotic community members only detected at low abundances. The lake water bacterial community was less diverse than that in groundwater and sediment, and was overwhelmingly represented by a single OTU affiliated with Salinisphaera. Pathways associated with halotolerance were found in the metagenomes, as were genes associated with biosynthesis of protective carotenoids. During periods of complete desiccation of the lake, we hypothesize that dormancy and entrapment in fluid inclusions in halite crystals may increase long-term survival, leading to the resilience of complex eukaryotes in this extreme environment.
Collapse
Affiliation(s)
- Elena Zaikova
- Department of Biology, Georgetown University, Washington, USA
| | - Kathleen C Benison
- Department of Geology and Geography, West Virginia University, Morgantown, USA
| | - Melanie R Mormile
- Department of Biology, Missouri University of Science and Technology, Rolla, USA
| | - Sarah Stewart Johnson
- Department of Biology, Georgetown University, Washington, USA. .,Program on Science, Technology, and International Affairs, Georgetown University, Washington, USA.
| |
Collapse
|
7
|
Font E, Carlut J, Rémazeilles C, Mather TA, Nédélec A, Mirão J, Casale S. End-Cretaceous akaganéite as a mineral marker of Deccan volcanism in the sedimentary record. Sci Rep 2017; 7:11453. [PMID: 28904378 PMCID: PMC5597636 DOI: 10.1038/s41598-017-11954-y] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2017] [Accepted: 09/01/2017] [Indexed: 12/02/2022] Open
Abstract
An enigmatic chloride-rich iron (oxyhydr)oxide has been recently identified together with mercury anomalies in End-Cretaceous marine sediments coeval with the Deccan Traps eruptions. The mineral was observed in Bidart (France) and Gubbio (Italy), suggesting a widespread phenomenon. However, the exact nature and origin of this Cl-bearing mineral remained speculative. Here, we characterized the accurate composition and nanostructure of this chloride-rich phase by using micro-Raman spectroscopy, Transmission (TEM) and Scanning (SEM) Electron Microscopy on Focused Ion Beam foils. We also provide new evidence of its occurrence in Zumaia, a reference KPg section from Spain. Results confirm akaganéite (β-FeOOH) as the main phase, with chloride content of 3–5 atomic weight %. Akaganéite particles are constituted by the aggregation of nanorods of akaganéite. Internal structures contain empty spaces, suggesting formation in a low-density (atmospheric) environment. This new mineralogical evidence supports the hypothesis that the observed akaganéite was formed in the Deccan volcanic plume and was transported to the Atlantic and Tethysian realms through the stratosphere. Therefore, akaganéite provides a potential new sedimentary marker to identify the imprint of the Deccan eruptions in the stratigraphic record and is evidence of volcanic halogen degassing and its potential role for the Cretaceous-Tertiary mass extinction.
Collapse
Affiliation(s)
- Eric Font
- IDL-FCUL, Instituto Dom Luís, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, Lisbon, Portugal.
| | - Julie Carlut
- Institut de Physique du Globe de Paris, Sorbonne Paris cité, Univ. Paris Diderot, UMR 7154 CNRS, Paris cedex 05, France
| | - Céline Rémazeilles
- Laboratoire des Sciences de l'Ingénieur pour l'Environnement, Pôle Sciences et Technologie, Avenue Michel Crépeau, 17042, La Rochelle Cedex 1, France
| | - Tamsin A Mather
- Department of Earth Sciences, University of Oxford, Oxford, UK
| | - Anne Nédélec
- GET- OMP, Université de Toulouse III, Toulouse, France
| | - José Mirão
- HERCULES Centre, ECT-Geosciences Department, University of Évora, Évora, Portugal
| | - Sandra Casale
- Sorbonne Universités, Université Pierre et Marie Curie (UPMC), CNRS, UMR 7197, Laboratoire de Réactivité de Surface (LRS), Paris, France
| |
Collapse
|
8
|
Andrei AŞ, Baricz A, Robeson MS, Păuşan MR, Tămaş T, Chiriac C, Szekeres E, Barbu-Tudoran L, Levei EA, Coman C, Podar M, Banciu HL. Hypersaline sapropels act as hotspots for microbial dark matter. Sci Rep 2017; 7:6150. [PMID: 28733590 PMCID: PMC5522462 DOI: 10.1038/s41598-017-06232-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2016] [Accepted: 06/12/2017] [Indexed: 12/04/2022] Open
Abstract
Present-day terrestrial analogue sites are crucial ground truth proxies for studying life in geochemical conditions close to those assumed to be present on early Earth or inferred to exist on other celestial bodies (e.g. Mars, Europa). Although hypersaline sapropels are border-of-life habitats with moderate occurrence, their microbiological and physicochemical characterization lags behind. Here, we study the diversity of life under low water activity by describing the prokaryotic communities from two disparate hypersaline sapropels (Transylvanian Basin, Romania) in relation to geochemical milieu and pore water chemistry, while inferring their role in carbon cycling by matching taxa to known taxon-specific biogeochemical functions. The polyphasic approach combined deep coverage SSU rRNA gene amplicon sequencing and bioinformatics with RT-qPCR and physicochemical investigations. We found that sapropels developed an analogous elemental milieu and harbored prokaryotes affiliated with fifty-nine phyla, among which the most abundant were Proteobacteria, Bacteroidetes and Chloroflexi. Containing thirty-two candidate divisions and possibly undocumented prokaryotic lineages, the hypersaline sapropels were found to accommodate one of the most diverse and novel ecosystems reported to date and may contribute to completing the phylogenetic branching of the tree of life.
Collapse
Affiliation(s)
- Adrian-Ştefan Andrei
- Department of Molecular Biology and Biotechnology, Faculty of Biology and Geology, Babeş-Bolyai University, Cluj-Napoca, Romania. .,Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Center of the Academy of Sciences of the Czech Republic, České Budějovice, Czech Republic.
| | - Andreea Baricz
- National Institute of Research and Development for Biological Sciences (NIRDBS), Institute of Biological Research, Cluj-Napoca, Romania
| | - Michael Scott Robeson
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.,Interstitial Genomics, LLC, Longmont, 80501, Colorado, USA
| | | | - Tudor Tămaş
- Department of Geology, Faculty of Biology and Geology, Babeş-Bolyai University, Cluj-Napoca, Romania
| | - Cecilia Chiriac
- Department of Molecular Biology and Biotechnology, Faculty of Biology and Geology, Babeş-Bolyai University, Cluj-Napoca, Romania.,National Institute of Research and Development for Biological Sciences (NIRDBS), Institute of Biological Research, Cluj-Napoca, Romania
| | - Edina Szekeres
- Department of Molecular Biology and Biotechnology, Faculty of Biology and Geology, Babeş-Bolyai University, Cluj-Napoca, Romania.,National Institute of Research and Development for Biological Sciences (NIRDBS), Institute of Biological Research, Cluj-Napoca, Romania
| | - Lucian Barbu-Tudoran
- Department of Molecular Biology and Biotechnology, Faculty of Biology and Geology, Babeş-Bolyai University, Cluj-Napoca, Romania
| | - Erika Andrea Levei
- INCDO-INOE 2000, Research Institute for Analytical Instrumentation, Cluj-Napoca, Romania
| | - Cristian Coman
- National Institute of Research and Development for Biological Sciences (NIRDBS), Institute of Biological Research, Cluj-Napoca, Romania
| | - Mircea Podar
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
| | - Horia Leonard Banciu
- Department of Molecular Biology and Biotechnology, Faculty of Biology and Geology, Babeş-Bolyai University, Cluj-Napoca, Romania.
| |
Collapse
|