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Rasmussen KL, Thieringer PH, Nevadomski S, Martinez AM, Dawson KS, Corsetti FA, Zheng XY, Lv Y, Chen X, Celestian AJ, Berelson WM, Rollins NE, Spear JR. Living to Lithified: Construction and Preservation of Silicified Biomarkers. GEOBIOLOGY 2024; 22:1-30. [PMID: 39319483 DOI: 10.1111/gbi.12620] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Revised: 07/21/2024] [Accepted: 09/03/2024] [Indexed: 09/26/2024]
Abstract
Whole microorganisms are rarely preserved in the fossil record but actively silicifying environments like hot springs provide an opportunity for microbial preservation, making silicifying environments critical for the study of microbial life through time on Earth and possibly other planetary bodies. Yet, the changes that biosignatures may undergo through lithification and burial remain unconstrained. At Steep Cone Geyser in Yellowstone National Park, we collected microbial material from (1) the living system across the active outflows, (2) the silicified areas adjacent to flows, and (3) lithified and buried material to assess the preservation of biosignatures and their changes across the lithification transect. Five biofabrics, built predominantly by Cyanobacteria Geitlerinema, Pseudanabaenaceae, and Leptolyngbya with some filamentous anoxygenic phototrophs contributions, were identified and tracked from the living system through the process of silicification/lithification. In the living systems, δ30Si values decrease from +0.13‰ in surficial waters to -2‰ in biomat samples, indicating a kinetic isotope effect potentially induced by increased association with actively growing biofabrics. The fatty acids C16:1 and iso-C14:0 and the hydrocarbon C17:0 were disentangled from confounding signals and determined to be reliable lipid biosignatures for living biofabric builders and tenant microorganisms. Builder and tenant microbial biosignatures were linked to specific Cyanobacteria, anoxygenic phototrophs, and heterotrophs, which are prominent members of the living communities. Upon lithification and burial, silicon isotopes of silicified biomass began to re-equilibrate, increasing from δ30Si -2‰ in living biomats to -0.55‰ in lithified samples. Active endolithic microbial communities were identified in lithified samples and were dominated by Cyanobacteria, heterotrophic bacteria, and fungi. Results indicate that distinct microbial communities build and inhabit silicified biofabrics through time and that microbial biosignatures shift over the course of lithification. These findings improve our understanding of how microbial communities silicify, the biomarkers they retain, and transitionary impacts that may occur through lithification and burial.
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Affiliation(s)
- Kalen L Rasmussen
- Department of Civil and Environmental Engineering, Colorado School of Mines, Golden, Colorado, USA
| | - Patrick H Thieringer
- Department of Civil and Environmental Engineering, Colorado School of Mines, Golden, Colorado, USA
| | - Sophia Nevadomski
- Department of Civil and Environmental Engineering, Colorado School of Mines, Golden, Colorado, USA
| | - Aaron M Martinez
- Department of Environmental Sciences, Rutgers University, New Brunswick, New Jersey, USA
| | - Katherine S Dawson
- Department of Environmental Sciences, Rutgers University, New Brunswick, New Jersey, USA
| | - Frank A Corsetti
- Department of Earth Sciences, University of Southern California, Los Angeles, California, USA
| | - Xin-Yuan Zheng
- Department of Earth and Environmental Sciences, University of Minnesota, Minneapolis, Minnesota, USA
| | - Yiwen Lv
- Department of Earth and Environmental Sciences, University of Minnesota, Minneapolis, Minnesota, USA
| | - Xinyang Chen
- Department of Earth and Environmental Sciences, University of Minnesota, Minneapolis, Minnesota, USA
| | - Aaron J Celestian
- Natural History Museum of Los Angeles County, Los Angeles, California, USA
| | - William M Berelson
- Department of Earth Sciences, University of Southern California, Los Angeles, California, USA
| | - Nick E Rollins
- Department of Earth Sciences, University of Southern California, Los Angeles, California, USA
| | - John R Spear
- Department of Civil and Environmental Engineering, Colorado School of Mines, Golden, Colorado, USA
- Quantitative Biosciences and Engineering Programs, Colorado School of Mines, Golden, Colorado, USA
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Ramkissoon NK, Macey MC, Kucukkilic-Stephens E, Barton T, Steele A, Johnson DN, Stephens BP, Schwenzer SP, Pearson VK, Olsson-Francis K. Experimental Identification of Potential Martian Biosignatures in Open and Closed Systems. ASTROBIOLOGY 2024; 24:538-558. [PMID: 38648554 DOI: 10.1089/ast.2023.0013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/25/2024]
Abstract
NASA's Perseverance and ESA's Rosalind Franklin rovers have the scientific goal of searching for evidence of ancient life on Mars. Geochemical biosignatures that form because of microbe-mineral interactions could play a key role in achieving this, as they can be preserved for millions of years on Earth, and the same could be true for Mars. Previous laboratory experiments have explored the formation of biosignatures under closed systems, but these do not represent the open systems that are found in natural martian environments, such as channels and lakes. In this study, we have conducted environmental simulation experiments using a global regolith simulant (OUCM-1), a thermochemically modelled groundwater, and an anaerobic microbial community to explore the formation of geochemical biosignatures within plausible open and closed systems on Mars. This initial investigation showed differences in the diversity of the microbial community developed after 28 days. In an open-system simulation (flow-through experiment), the acetogenic Acetobacterium (49% relative abundance) and the sulfate reducer Desulfosporomusa (43% relative abundance) were the dominant genera. Whereas in the batch experiment, the sulfate reducers Desulfovibrio, Desulfomicrobium, and Desulfuromonas (95% relative abundance in total) were dominant. We also found evidence of enhanced mineral dissolution within the flow-through experiment, but there was little evidence of secondary deposits in the presence of biota. In contrast, SiO2 and Fe deposits formed within the batch experiment with biota but not under abiotic conditions. The results from these initial experiments indicate that different geochemical biosignatures can be generated between open and closed systems, and therefore, biosignature formation in open systems warrants further investigation.
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Affiliation(s)
| | - Michael C Macey
- AstrobiologyOU, STEM Faculty, The Open University, Milton Keynes, UK
| | | | - Timothy Barton
- AstrobiologyOU, STEM Faculty, The Open University, Milton Keynes, UK
| | - Andrew Steele
- Earth and Planetary Laboratory, Carnegie Institution of Washington, Washington, DC, USA
| | - David N Johnson
- AstrobiologyOU, STEM Faculty, The Open University, Milton Keynes, UK
| | - Ben P Stephens
- AstrobiologyOU, STEM Faculty, The Open University, Milton Keynes, UK
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Teece BL, Havig JR, George SC, Hamilton TL, Baumgartner RJ, Hartz J, Van Kranendonk MJ. Biogeochemistry of Recently Fossilized Siliceous Hot Spring Sinters from Yellowstone, USA. ASTROBIOLOGY 2023; 23:155-171. [PMID: 36413376 DOI: 10.1089/ast.2022.0012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Active hot springs are dynamic geobiologically active environments. Heat- and element-enriched fluids form hot spring sinter deposits that are inhabited by microbial and macroscopic eukaryotic communities, but it is unclear how variable heat, fluid circulation, and mineralization within hot spring systems affect the preservation of organic matter in sinters. We present geological, petrographic, and organic geochemical data from fossilized hot spring sinters (<13 Ka) from three distinct hot spring fields of Yellowstone National Park. The aims of this study were to examine the preservation of hydrocarbons and discern whether the hydrocarbons in these samples were derived from in situ communities or transported by hydrothermal fluids. Organic geochemistry reveals the presence of n-alkanes, methylalkanes, hopanes, and other terpanes, and the distribution of methylheptadecanes is compared to published observations of community composition in extant hot springs with similar geochemistry. Unexpectedly, hopanes have a thermally mature signal, and Raman spectroscopy confirms that the kerogen in some samples has nearly reached the oil window, despite never having been buried. Our results suggest that organic matter maturation occurred through below-surface processes in the hotter, deeper parts of the hydrothermal system and that this exogenous material was then transported and emplaced within the sinter.
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Affiliation(s)
- Bronwyn L Teece
- Australian Centre for Astrobiology (ACA), School of Biological, Earth and Environmental Sciences, University of New South Wales Sydney, Sydney, Australia
- Earth and Sustainability Science Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales Sydney, Sydney, Australia
| | - Jeff R Havig
- Department of Plant and Microbial Biology, University of Minnesota, St. Paul, Minnesota, USA
- BioTechnology Institute, University of Minnesota, St. Paul, Minnesota, USA
- Department of Earth and Environmental Sciences, University of Minnesota, Minneapolis, Minnesota, USA
| | - Simon C George
- School of Natural Sciences, Macquarie University, Sydney, Australia
| | - Trinity L Hamilton
- Department of Plant and Microbial Biology, University of Minnesota, St. Paul, Minnesota, USA
- BioTechnology Institute, University of Minnesota, St. Paul, Minnesota, USA
| | - Raphael J Baumgartner
- Australian Centre for Astrobiology (ACA), School of Biological, Earth and Environmental Sciences, University of New South Wales Sydney, Sydney, Australia
- Earth and Sustainability Science Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales Sydney, Sydney, Australia
- CSIRO Mineral Resources, Kensington, Australia
| | - Julie Hartz
- School of Natural Sciences, Macquarie University, Sydney, Australia
| | - Martin J Van Kranendonk
- Australian Centre for Astrobiology (ACA), School of Biological, Earth and Environmental Sciences, University of New South Wales Sydney, Sydney, Australia
- Earth and Sustainability Science Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales Sydney, Sydney, Australia
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Rasmussen KL, Stamps BW, Vanzin GF, Ulrich SM, Spear JR. Spatial and temporal dynamics at an actively silicifying hydrothermal system. Front Microbiol 2023; 14:1172798. [PMID: 37206339 PMCID: PMC10188993 DOI: 10.3389/fmicb.2023.1172798] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Accepted: 04/14/2023] [Indexed: 05/21/2023] Open
Abstract
Steep Cone Geyser is a unique geothermal feature in Yellowstone National Park (YNP), Wyoming, actively gushing silicon-rich fluids along outflow channels possessing living and actively silicifying microbial biomats. To assess the geomicrobial dynamics occurring temporally and spatially at Steep Cone, samples were collected at discrete locations along one of Steep Cone's outflow channels for both microbial community composition and aqueous geochemistry analysis during field campaigns in 2010, 2018, 2019, and 2020. Geochemical analysis characterized Steep Cone as an oligotrophic, surface boiling, silicious, alkaline-chloride thermal feature with consistent dissolved inorganic carbon and total sulfur concentrations down the outflow channel ranging from 4.59 ± 0.11 to 4.26 ± 0.07 mM and 189.7 ± 7.2 to 204.7 ± 3.55 μM, respectively. Furthermore, geochemistry remained relatively stable temporally with consistently detectable analytes displaying a relative standard deviation <32%. A thermal gradient decrease of ~55°C was observed from the sampled hydrothermal source to the end of the sampled outflow transect (90.34°C ± 3.38 to 35.06°C ± 7.24). The thermal gradient led to temperature-driven divergence and stratification of the microbial community along the outflow channel. The hyperthermophile Thermocrinis dominates the hydrothermal source biofilm community, and the thermophiles Meiothermus and Leptococcus dominate along the outflow before finally giving way to more diverse and even microbial communities at the end of the transect. Beyond the hydrothermal source, phototrophic taxa such as Leptococcus, Chloroflexus, and Chloracidobacterium act as primary producers for the system, supporting heterotrophic growth of taxa such as Raineya, Tepidimonas, and Meiothermus. Community dynamics illustrate large changes yearly driven by abundance shifts of the dominant taxa in the system. Results indicate Steep Cone possesses dynamic outflow microbial communities despite stable geochemistry. These findings improve our understanding of thermal geomicrobiological dynamics and inform how we can interpret the silicified rock record.
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Affiliation(s)
- Kalen L. Rasmussen
- Department of Civil and Environmental Engineering, Colorado School of Mines, Golden, CO, United States
| | - Blake W. Stamps
- Air Force Research Laboratory, Materials and Manufacturing Directorate, Wright-Patterson Air Force Base, Dayton, OH, United States
| | - Gary F. Vanzin
- Department of Civil and Environmental Engineering, Colorado School of Mines, Golden, CO, United States
| | | | - John R. Spear
- Department of Civil and Environmental Engineering, Colorado School of Mines, Golden, CO, United States
- *Correspondence: John R. Spear,
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Havig JR, Kuether JE, Gangidine AJ, Schroeder S, Hamilton TL. Hot Spring Microbial Community Elemental Composition: Hot Spring and Soil Inputs, and the Transition from Biocumulus to Siliceous Sinter. ASTROBIOLOGY 2021; 21:1526-1546. [PMID: 34889663 DOI: 10.1089/ast.2019.2086] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Hydrothermal systems host microbial communities that include some of the most deeply branching members of the tree of life, and recent work has suggested that terrestrial hot springs may have provided ideal conditions for the origin of life. Hydrothermal microbial communities are a potential source for biosignatures, and the presence of terrestrial hot spring deposits in 3.48 Ga rocks as well as on the surface of Mars lends weight to a need to better understand the preservation of biosignatures in these systems. Although there are general patterns of elemental enrichment in hydrothermal water dependent on physical and geochemical conditions, the elemental composition of bulk hydrothermal microbial communities (here termed biocumulus, including cellular biomass and accumulated non-cellular material) is largely unexplored. However, recent work has suggested both bulk and spatial trace element enrichment as a potential biosignature in hot spring deposits. To elucidate the elemental composition of hot spring biocumulus samples and explore the sources of those elements, we analyzed a suite of 16 elements in hot spring water samples and corresponding biocumulus from 60 hot springs sinter samples, and rock samples from 8 hydrothermal areas across Yellowstone National Park. We combined these data with values reported in literature to assess the patterns of elemental uptake into biocumulus and retention in associated siliceous sinter. Hot spring biocumuli are of biological origin, but organic carbon comprises a minor percentage of the total mass of both thermophilic chemotrophic and phototrophic biocumulus. Instead, the majority of hot spring biocumulus is inorganic material-largely silica-and the distribution of major and trace elements mimics that of surrounding rock and soil rather than the hot spring fluids. Analyses indicate a systematic loss of biologically associated elements during diagenetic transformation of biocumulus to siliceous sinter, suggesting a potential for silica sinter to preserve a trace element biosignature.
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Affiliation(s)
- Jeff R Havig
- Department of Earth and Environmental Sciences, University of Minnesota, Minneapolis, Minnesota, USA
- Department of Plant and Microbial Biology, University of Minnesota, Saint Paul, Minnesota, USA
| | - Joshua E Kuether
- Department of Earth and Environmental Sciences, University of Minnesota, Minneapolis, Minnesota, USA
| | | | - Sarah Schroeder
- Department of Earth and Environmental Sciences, University of Minnesota, Minneapolis, Minnesota, USA
| | - Trinity L Hamilton
- Department of Plant and Microbial Biology, University of Minnesota, Saint Paul, Minnesota, USA
- BioTechnology Institute, University of Minnesota, Saint Paul, Minnesota, USA
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Trace Element Concentrations Associated with Mid-Paleozoic Microfossils as Biosignatures to Aid in the Search for Life. Life (Basel) 2021; 11:life11020142. [PMID: 33668639 PMCID: PMC7918189 DOI: 10.3390/life11020142] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Revised: 02/03/2021] [Accepted: 02/09/2021] [Indexed: 12/29/2022] Open
Abstract
Identifying microbial fossils in the rock record is a difficult task because they are often simple in morphology and can be mimicked by non-biological structures. Biosignatures are essential for identifying putative fossils as being definitively biological in origin, but are often lacking due to geologic effects which can obscure or erase such signs. As such, there is a need for robust biosignature identification techniques. Here we show new evidence for the application of trace elements as biosignatures in microfossils. We found elevated concentrations of magnesium, aluminum, manganese, iron, and strontium colocalized with carbon and sulfur in microfossils from Drummond Basin, a mid-Paleozoic hot spring deposit in Australia. Our results also suggest that trace element sequestrations from modern hot spring deposits persist through substantial host rock alteration. Because some of the oldest fossils on Earth are found in hot spring deposits and ancient hot spring deposits are also thought to occur on Mars, this biosignature technique may be utilized as a valuable tool to aid in the search for extraterrestrial life.
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Gangidine A, Havig JR, Hannon JS, Czaja AD. Silica Precipitation in a Wet-Dry Cycling Hot Spring Simulation Chamber. Life (Basel) 2020; 10:E3. [PMID: 31947527 PMCID: PMC7175326 DOI: 10.3390/life10010003] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2019] [Revised: 12/23/2019] [Accepted: 01/09/2020] [Indexed: 12/16/2022] Open
Abstract
Terrestrial hot springs have emerged as strong contenders for sites that could have facilitated the origin of life. Cycling between wet and dry conditions is a key feature of these systems, which can produce both structural and chemical complexity within protocellular material. Silica precipitation is a common phenomenon in terrestrial hot springs and is closely associated with life in modern systems. Not only does silica preserve evidence of hot spring life, it also can help it survive during life through UV protection, a factor which would be especially relevant on the early Earth. Determining which physical and chemical components of hot springs are the result of life vs. non-life in modern hot spring systems is a difficult task, however, since life is so prevalent in these environments. Using a model hot spring simulation chamber, we demonstrate a simple yet effective way to precipitate silica with or without the presence of life. This system may be valuable in further investigating the plausible role of silica precipitation in ancient terrestrial hot spring environments even before life arose, as well as its potential role in providing protection from the high surface UV conditions which may have been present on early Earth.
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Affiliation(s)
- Andrew Gangidine
- Department of Geology, University of Cincinnati, Cincinnati, OH 45221, USA; (J.S.H.)
| | - Jeff R. Havig
- Department of Earth and Environmental Sciences, University of Minnesota, Minneapolis, MN 55455, USA;
| | - Jeffrey S. Hannon
- Department of Geology, University of Cincinnati, Cincinnati, OH 45221, USA; (J.S.H.)
| | - Andrew D. Czaja
- Department of Geology, University of Cincinnati, Cincinnati, OH 45221, USA; (J.S.H.)
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