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Truong C, Bernard S, Le Pape P, Morin G, Baya C, Merrot P, Gorlas A, Guyot F. Production of carbon-containing pyrite spherules induced by hyperthermophilic Thermococcales: a biosignature? Front Microbiol 2023; 14:1145781. [PMID: 37303784 PMCID: PMC10248028 DOI: 10.3389/fmicb.2023.1145781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Accepted: 05/02/2023] [Indexed: 06/13/2023] Open
Abstract
Thermococcales, a major order of hyperthermophilic archaea inhabiting iron- and sulfur-rich anaerobic parts of hydrothermal deep-sea vents, are known to induce the formation of iron phosphates, greigite (Fe3S4) and abundant quantities of pyrite (FeS2), including pyrite spherules. In the present study, we report the characterization of the sulfide and phosphate minerals produced in the presence of Thermococcales using X-ray diffraction, synchrotron-based X ray absorption spectroscopy and scanning and transmission electron microscopies. Mixed valence Fe(II)-Fe(III) phosphates are interpreted as resulting from the activity of Thermococcales controlling phosphorus-iron-sulfur dynamics. The pyrite spherules (absent in abiotic control) consist of an assemblage of ultra-small nanocrystals of a few ten nanometers in size, showing coherently diffracting domain sizes of few nanometers. The production of these spherules occurs via a sulfur redox swing from S0 to S-2 and then to S-1, involving a comproportionation of (-II) and (0) oxidation states of sulfur, as supported by S-XANES data. Importantly, these pyrite spherules sequester biogenic organic compounds in small but detectable quantities, possibly making them good biosignatures to be searched for in extreme environments.
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Affiliation(s)
- Chloé Truong
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), MNHN, CNRS, IRD, Sorbonne Université, Paris, France
| | - Sylvain Bernard
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), MNHN, CNRS, IRD, Sorbonne Université, Paris, France
| | - Pierre Le Pape
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), MNHN, CNRS, IRD, Sorbonne Université, Paris, France
| | - Guillaume Morin
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), MNHN, CNRS, IRD, Sorbonne Université, Paris, France
| | - Camille Baya
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), MNHN, CNRS, IRD, Sorbonne Université, Paris, France
| | - Pauline Merrot
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), MNHN, CNRS, IRD, Sorbonne Université, Paris, France
| | - Aurore Gorlas
- CEA, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay, Gif-sur-Yvette, France
| | - François Guyot
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), MNHN, CNRS, IRD, Sorbonne Université, Paris, France
- Institut Universitaire de France (IUF), Paris, France
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Runge EA, Mansor M, Kappler A, Duda JP. Microbial biosignatures in ancient deep-sea hydrothermal sulfides. GEOBIOLOGY 2023; 21:355-377. [PMID: 36524457 DOI: 10.1111/gbi.12539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Revised: 11/03/2022] [Accepted: 12/03/2022] [Indexed: 06/17/2023]
Abstract
Deep-sea hydrothermal systems provide ideal conditions for prebiotic reactions and ancient metabolic pathways and, therefore, might have played a pivotal role in the emergence of life. To understand this role better, it is paramount to examine fundamental interactions between hydrothermal processes, non-living matter, and microbial life in deep time. However, the distribution and diversity of microbial communities in ancient deep-sea hydrothermal systems are still poorly constrained, so evolutionary, and ecological relationships remain unclear. One important reason is an insufficient understanding of the formation of diagnostic microbial biosignatures in such settings and their preservation through geological time. This contribution centers around microbial biosignatures in Precambrian deep-sea hydrothermal sulfide deposits. Intending to provide a valuable resource for scientists from across the natural sciences whose research is concerned with the origins of life, we first introduce different types of biosignatures that can be preserved over geological timescales (rock fabrics and textures, microfossils, mineral precipitates, carbonaceous matter, trace metal, and isotope geochemical signatures). We then review selected reports of biosignatures from Precambrian deep-sea hydrothermal sulfide deposits and discuss their geobiological significance. Our survey highlights that Precambrian hydrothermal sulfide deposits potentially encode valuable information on environmental conditions, the presence and nature of microbial life, and the complex interactions between fluids, micro-organisms, and minerals. It further emphasizes that the geobiological interpretation of these records is challenging and requires the concerted application of analytical and experimental methods from various fields, including geology, mineralogy, geochemistry, and microbiology. Well-orchestrated multidisciplinary studies allow us to understand the formation and preservation of microbial biosignatures in deep-sea hydrothermal sulfide systems and thus help unravel the fundamental geobiology of ancient settings. This, in turn, is critical for reconstructing life's emergence and early evolution on Earth and the search for life elsewhere in the universe.
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Affiliation(s)
- Eric Alexander Runge
- Sedimentology and Organic Geochemistry, Department of Geosciences, Tübingen University, Tübingen, Germany
| | - Muammar Mansor
- Geomicrobiology, Department of Geosciences, Tübingen University, Tübingen, Germany
| | - Andreas Kappler
- Geomicrobiology, Department of Geosciences, Tübingen University, Tübingen, Germany
- Cluster of Excellence EXC 2124, Controlling Microbes to Fight Infection, Tübingen, Germany
| | - Jan-Peter Duda
- Sedimentology and Organic Geochemistry, Department of Geosciences, Tübingen University, Tübingen, Germany
- Geobiology, Geoscience Center, Göttingen University, Göttingen, Germany
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Nabeh N, Brokaw C, Picard A. Quantification of Organic Carbon Sequestered by Biogenic Iron Sulfide Minerals in Long-Term Anoxic Laboratory Incubations. Front Microbiol 2022; 13:662219. [PMID: 35572660 PMCID: PMC9093744 DOI: 10.3389/fmicb.2022.662219] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2021] [Accepted: 03/29/2022] [Indexed: 11/13/2022] Open
Abstract
Organic carbon sequestration in sedimentary environments controls oxygen and carbon dioxide concentrations in the atmosphere. While minerals play an important role in the preservation of organic carbon, there is a lack of understanding about the formation and stability of organo-mineral interactions in anoxic environments, especially those involving authigenic iron sulfide minerals. In this study, we quantified organic carbon and nitrogen sequestered in biogenic iron sulfide minerals co-precipitated with sulfate-reducing bacteria (SRB) in freshwater and marine conditions in long-term laboratory experiments. The amounts of C and N associated with biogenic iron sulfide minerals increased with increasing cell biomass concentrations available in the media. C and N levels stabilized over the first 2 months of incubation and remained stable for up to 1 year. Crystalline mackinawite (FeS) formed in all experimental conditions and transformed to greigite only in some experimental conditions. We did not find evidence that this mineral transformation affected C and N levels, neither could we identify the factors that controlled greigite formation. Pyrite did not form in our experimental conditions. While C concentrations in minerals correlated with concentrations of reduced sulfate in both the freshwater and marine media, removal of OC by iron sulfide minerals was more efficient in freshwater than marine conditions. Removal of OC by iron sulfide minerals was also more efficient when cells were present (SRB biomass) in comparison with abiotic incubations with organic mixtures (e.g., tryptone, yeast extract, and casamino acids). Our study highlights the potential for biogenic iron sulfide minerals to quantitatively contribute to organic carbon preservation in anoxic environments.
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Affiliation(s)
- Nader Nabeh
- School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, United States
| | - Cheyenne Brokaw
- School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, United States
| | - Aude Picard
- School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, United States
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Sanden SA, Szilagyi RK, Li Y, Kitadai N, Webb SM, Yano T, Nakamura R, Hara M, McGlynn SE. Electrochemically induced metal- vs. ligand-based redox changes in mackinawite: identification of a Fe 3+- and polysulfide-containing intermediate. Dalton Trans 2021; 50:11763-11774. [PMID: 34346451 PMCID: PMC8553345 DOI: 10.1039/d1dt01684a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Under anaerobic conditions, ferrous iron reacts with sulfide producing FeS, which can then undergo a temperature, redox potential, and pH dependent maturation process resulting in the formation of oxidized mineral phases, such as greigite or pyrite. A greater understanding of this maturation process holds promise for the development of iron-sulfide catalysts, which are known to promote diverse chemical reactions, such as H+, CO2 and NO3- reduction processes. Hampering the full realization of the catalytic potential of FeS, however, is an incomplete knowledge of the molecular and redox processess ocurring between mineral and nanoparticulate phases. Here, we investigated the chemical properties of iron-sulfide by cyclic voltammetry, Raman and X-ray absorption spectroscopic techniques. Tracing oxidative maturation pathways by varying electrode potential, nanoparticulate n(Fe2+S2-)(s) was found to oxidize to a Fe3+ containing FeS phase at -0.5 V vs. Ag/AgCl (pH = 7). In a subsequent oxidation, polysulfides are proposed to give a material that is composed of Fe2+, Fe3+, S2- and polysulfide (Sn2-) species, with its composition described as Fe2+1-3xFe3+2xS2-1-y(Sn2-)y. Thermodynamic properties of model compounds calculated by density functional theory indicate that ligand oxidation occurs in conjunction with structural rearrangements, whereas metal oxidation may occur prior to structural rearrangement. These findings together point to the existence of a metastable FeS phase located at the junction of a metal-based oxidation path between FeS and greigite (Fe2+Fe3+2S2-4) and a ligand-based oxidation path between FeS and pyrite (Fe2+(S2)2-).
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Affiliation(s)
- Sebastian A. Sanden
- Earth Life Science Institute, Tokyo Institute of Technology 2-21-1 IE-1 Ookayama, Meguro, Tokyo 152-8550, Japan
- School of Materials and Chemical Technology, Tokyo Institute of Technology 4259 G1-7 Nagatsuta, Midori-ku, Yokohama, Kanagawa 226-8502, Japan
| | - Robert K. Szilagyi
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT 59717, USA
| | - Yamei Li
- Earth Life Science Institute, Tokyo Institute of Technology 2-21-1 IE-1 Ookayama, Meguro, Tokyo 152-8550, Japan
| | - Norio Kitadai
- Super-cutting-edge Grand and Advanced Research (SUGAR) Program, Institute for Extra-cutting edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka 237-0061, Japan
| | - Samuel M. Webb
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA
| | - Takaaki Yano
- Institute of Post-LED Photonics, Tokushima University, Minami-Jyosanjima, Tokushima 770-8506, Japan
| | - Ryuhei Nakamura
- Earth Life Science Institute, Tokyo Institute of Technology 2-21-1 IE-1 Ookayama, Meguro, Tokyo 152-8550, Japan
- Center for Sustainable Resource Science, RIKEN 2-1 Hirosawa. Wako, Saitama 351-0198, Japan
| | - Masahiko Hara
- Earth Life Science Institute, Tokyo Institute of Technology 2-21-1 IE-1 Ookayama, Meguro, Tokyo 152-8550, Japan
- School of Materials and Chemical Technology, Tokyo Institute of Technology 4259 G1-7 Nagatsuta, Midori-ku, Yokohama, Kanagawa 226-8502, Japan
| | - Shawn E. McGlynn
- Earth Life Science Institute, Tokyo Institute of Technology 2-21-1 IE-1 Ookayama, Meguro, Tokyo 152-8550, Japan
- Center for Sustainable Resource Science, RIKEN 2-1 Hirosawa. Wako, Saitama 351-0198, Japan
- Blue Marble Space Institute of Science, Seattle, Washington 98154, USA
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