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For: Bertrand D, Lajoie M, El-Mabrouk N. Inferring ancestral gene orders for a family of tandemly arrayed genes. J Comput Biol 2008;15:1063-77. [PMID: 18781832 DOI: 10.1089/cmb.2008.0025] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
Number Cited by Other Article(s)
1
Predicting the Evolution of Syntenies—An Algorithmic Review. ALGORITHMS 2021. [DOI: 10.3390/a14050152] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
2
Greenman CD, Penso-Dolfin L, Wu T. The complexity of genome rearrangement combinatorics under the infinite sites model. J Theor Biol 2020;501:110335. [DOI: 10.1016/j.jtbi.2020.110335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2019] [Revised: 04/16/2020] [Accepted: 05/14/2020] [Indexed: 11/30/2022]
3
Chauve C, El-Mabrouk N, Guéguen L, Semeria M, Tannier E. Duplication, Rearrangement and Reconciliation: A Follow-Up 13 Years Later. MODELS AND ALGORITHMS FOR GENOME EVOLUTION 2013. [DOI: 10.1007/978-1-4471-5298-9_4] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
4
El-Mabrouk N, Sankoff D. Analysis of gene order evolution beyond single-copy genes. Methods Mol Biol 2012;855:397-429. [PMID: 22407718 DOI: 10.1007/978-1-61779-582-4_15] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
5
Tremblay Savard O, Bertrand D, El-Mabrouk N. Evolution of orthologous tandemly arrayed gene clusters. BMC Bioinformatics 2011;12 Suppl 9:S2. [PMID: 22152029 PMCID: PMC3283317 DOI: 10.1186/1471-2105-12-s9-s2] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
6
Vinar T, Brejová B, Song G, Siepel A. Reconstructing histories of complex gene clusters on a phylogeny. J Comput Biol 2011;17:1267-79. [PMID: 20874408 DOI: 10.1089/cmb.2010.0090] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
7
Kahn CL, Mozes S, Raphael BJ. Efficient algorithms for analyzing segmental duplications with deletions and inversions in genomes. Algorithms Mol Biol 2010;5:11. [PMID: 20047668 PMCID: PMC2820476 DOI: 10.1186/1748-7188-5-11] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2009] [Accepted: 01/04/2010] [Indexed: 02/06/2023]  Open
8
Lajoie M, Bertrand D, El-Mabrouk N. Inferring the evolutionary history of gene clusters from phylogenetic and gene order data. Mol Biol Evol 2009;27:761-72. [PMID: 19903657 DOI: 10.1093/molbev/msp271] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]  Open
9
Vinař T, Brejová B, Song G, Siepel A. Reconstructing Histories of Complex Gene Clusters on a Phylogeny. COMPARATIVE GENOMICS 2009. [DOI: 10.1007/978-3-642-04744-2_13] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
10
LaRue RS, Jónsson SR, Silverstein KAT, Lajoie M, Bertrand D, El-Mabrouk N, Hötzel I, Andrésdóttir V, Smith TPL, Harris RS. The artiodactyl APOBEC3 innate immune repertoire shows evidence for a multi-functional domain organization that existed in the ancestor of placental mammals. BMC Mol Biol 2008;9:104. [PMID: 19017397 PMCID: PMC2612020 DOI: 10.1186/1471-2199-9-104] [Citation(s) in RCA: 147] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2008] [Accepted: 11/18/2008] [Indexed: 11/10/2022]  Open
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