Are designer guppies inbred? Microsatellite variation in five strains of ornamental guppies, Poecilia reticulata, used for behavioral research

The phylogenetic position of zebrafish (Danio rerio) from south african pet shops

BACKGROUND

Zebrafish (Danio rerio), a small freshwater fish that originates from India, Bangladesh, Nepal, Bhutan and northern Myanmar, have been widely used as a model organism for studies of developmental biology and genetics. The current study aimed to determine the origin of South African pet shop stock that are currently being used to establish a laboratory population founded from diverse sources available locally.

METHODS AND RESULTS

Zebrafish DNA was extracted from 65 specimens housed at the University of the Free State (UFS) Department of Genetics. For phylogenetic analysis, cytb sequences were generated from all samples. A further 178 sequences were downloaded from the GenBank database, including sequences of an outgroup species (Danio kyathit). Five microsatellite markers were used to further assess the genetic diversity of the UFS zebrafish specimens. A maximum likelihood analysis was performed for the cytb data. Results of the phylogenetic analyses divided the sequences into three major genetic groups, which was congruent with a previous study on laboratory zebrafish provenance. The SA pet shop fish grouped with the lines from the northern and north-eastern regions of India. High levels of microsatellite genetic diversity were observed for the pet shop sourced population, correlating to what has previously been observed in zebrafish.

CONCLUSION

These results can be used to guide the future development of laboratory lines suited to the needs at the UFS.

Depletion of MHC supertype during domestication can compromise immunocompetence

The major histocompatibility complex (MHC) plays an important role in infectious disease resistance. The presence of certain MHC alleles and functionally similar groups of MHC alleles (i.e., supertypes) has been associated with resistance to particular parasite species. Farmed and domesticated fish stocks are often depleted in their MHC alleles and supertype diversity, possibly as a consequence of artificial selection for desirable traits, inbreeding (loss of heterozygosity), genetic drift (loss of allelic diversity) and/or reduced parasite biodiversity. Here we quantify the effects of depletion of MHC class II genotype and supertype variation on resistance to the parasite Gyrodactylus turnbulli in guppies (Poecilia reticulata). Compared to the descendants of wild‐caught guppies, ornamental fish had a significantly reduced MHC variation (i.e., the numbers of MHC alleles and supertypes per individual, and per population). In addition, ornamental fish were significantly more susceptible to G. turnbulli infections, accumulating peak intensity 10 times higher than that of their wildtype counterparts. Four out of 13 supertypes were associated with a significantly reduced parasite load, and the presence of some supertypes had a dramatic effect on the intensity of infection. Remarkably, the ornamental and wildtype fish differed in the supertypes that were associated with parasite resistance. Analysis with a genetic algorithm showed that resistance‐conferring supertypes of the wildtype and ornamental fish shared two unique amino acids in the peptide‐binding region of the MHC that were not found in any other alleles. These data show that the supertype demarcation captures some, but not all, of the variation in the immune function of the alleles. This study highlights the importance of managing functional MHC diversity in livestock, and suggests there might be some immunological redundancy among MHC supertypes.

The effects of elevated temperature on the sexual traits, immunology and survivorship of a tropical ectotherm

In 2007, the Intergovernmental Panel on Climate Change projected an average global air temperature increase of 1.1-6.4°C by the end of the 21st century. Although the tropics are predicted to experience less extreme temperature increases than regions of higher latitude, tropical ectotherms live close to their thermal limits, and are thus particularly vulnerable to increases in temperature. In this study, we examined how predicted patterns of global warming will affect survival and sexual traits in the Trinidadian guppy (Poecilia reticulata). Guppies were exposed from birth to one of four temperature treatments: 23, 25 (control), 28 or 30°C. We measured brood survival and, at sexual maturity, male ornamentation, sperm traits and immune response. Our results show that increases in temperature result in guppies that have shorter, slower sperm but that there is an optimum temperature for ornamental hue at 28°C. Given the importance of sperm quality for reproduction, these results suggest population viability could be affected by warming. However, we found no difference in brood survival or immune response to a novel antigen across the treatments, indicating that survival may not be as vulnerable as previously thought. Overall, our data suggest that male sexual traits, and in particular sperm performance, are more sensitive than survival to a warming environment.

Indirect genetic effects influence antipredator behavior in guppies: estimates of the coefficient of interaction psi and the inheritance of reciprocity

How and why cooperation evolves, particularly among nonrelatives, remains a major paradox for evolutionary biologists and behavioral ecologists. Although much attention has focused on fitness consequences associated with cooperating, relatively little is known about the second component of evolutionary change, the inheritance of cooperation or reciprocity. The genetics of behaviors that can only be expressed in the context of interactions are particularly difficult to describe because the relevant genes reside in multiple social partners. Indirect genetic effects (IGEs) describe the influence of genes carried in social partners on the phenotype of a focal individual and thus provide a novel approach to quantifying the genetics underlying interactions such as reciprocal cooperation. We used inbred lines of guppies and a novel application of IGE theory to describe the dual genetic control of predator inspection and social behavior, both classic models of reciprocity. We identified effects of focal strain, social group strain, and interactions between focal and group strains on variation in focal behavior. We measured psi, the coefficient of the interaction, which describes the degree to which an individual's phenotype is influenced by the phenotype of its social partners. The genetic identity of social partners substantially influences inspection behavior, measures of threat assessment, and schooling and does so in positively reinforcing manner. We therefore demonstrate strong IGEs for antipredator behavior that represent the genetic variation necessary for the evolution of reciprocity.

Integrative and genomics approaches to uncover the mechanistic bases of fish behavior and its diversity

Understanding the molecular mechanisms underlying fish behavior is of fundamental importance to further our understanding of the proximate and ultimate causes of variation in this trait and informs us on issues of animal husbandry, conservation, and welfare. One way to approach this question is to study variation in gene expression in individuals exhibiting different behaviors and relating it to variations at other phenotypic levels in an organismic, ecological and evolutionary context. Here we review studies that have shown that the use of such an integrative and genomics approach is greatly useful for shedding new light on the mechanisms of behaviors as diverse as social dominance, mate choice, reproduction and migration. We present studies that use functional genomics tools and integrate several biological levels of organization, including transcription variation, which are important in the context of integrative biology and genomics of fish behavior. We review studies of phenotype-level variation in transcription but also studies that focus on variation at the individual-level. Dissecting the molecular bases of among-individual variation in behavior, including the study of variation in temperament (behavioral syndrome/coping style) within and among populations, will gain importance in the field in the years to come.