Advanced X-ray CT scanning can boost tree ring research for earth system sciences

Non-destructive wood identification using X-ray µCT scanning: which resolution do we need?

BACKGROUND

Taxonomic identification of wood specimens provides vital information for a wide variety of academic (e.g. paleoecology, cultural heritage studies) and commercial (e.g. wood trade) purposes. It is generally accomplished through the observation of key anatomical features. Classic methodologies mostly require destructive sub-sampling, which is not always acceptable. X-ray computed micro-tomography (µCT) is a promising non-destructive alternative since it allows a detailed non-invasive visualization of the internal wood structure. There is, however, no standardized approach that determines the required resolution for proper wood identification using X-ray µCT. Here we compared X-ray µCT scans of 17 African wood species at four resolutions (1 µm, 3 µm, 8 µm and 15 µm). The species were selected from the Xylarium of the Royal Museum for Central Africa, Belgium, and represent a wide variety of wood-anatomical features.

RESULTS

For each resolution, we determined which standardized anatomical features can be distinguished or measured, using the anatomical descriptions and microscopic photographs on the Inside Wood Online Database as a reference. We show that small-scale features (e.g. pits and fibres) can be best distinguished at high resolution (especially 1 µm voxel size). In contrast, large-scale features (e.g. vessel porosity or arrangement) can be best observed at low resolution due to a larger field of view. Intermediate resolutions are optimal (especially 3 µm voxel size), allowing recognition of most small- and large-scale features. While the potential for wood identification is thus highest at 3 µm, the scans at 1 µm and 8 µm were successful in more than half of the studied cases, and even the 15 µm resolution showed a high potential for 40% of the samples.

CONCLUSIONS

The results show the potential of X-ray µCT for non-destructive wood identification. Each of the four studied resolutions proved to contain information on the anatomical features and has the potential to lead to an identification. The dataset of 17 scanned species is made available online and serves as the first step towards a reference database of scanned wood species, facilitating and encouraging more systematic use of X-ray µCT for the identification of wood species.

Heading for a fall: The fate of old wind-thrown beech trees (Fagus sylvatica) is detectable in their growth pattern

Common beech (Fagus sylvatica) is one of the most important deciduous tree species in European forests. However, climate-change-induced drought may threaten its dominant position. The Sonian Forest close to Brussels (Belgium) is home to some of the largest beech trees in the world. This UNESCO world heritage site is famous for its high density of very large beech trees as a result of its climatic suitability, fertile soil conditions, and past management. Here we utilized tree-ring data from increment cores to investigate the growth of these old and monumental beech trees, evaluating their growth trends, response to past climate, and the effect of mast years on 39 living and 16 recently wind-thrown trees. Our analysis reveals that the sampled trees were generally sensitive to spring and summer droughts but recovered quickly after such an extreme climatic event. The growth trend of living trees has remained high and only shows a slight, statistically insignificant, decline over the past 50 years. Although the overall growth rate remains strong (BAI 50 cm2/year), the past five decades have shown strong inter-annual growth variations due to frequent and more intense droughts combined with an increased frequency of mast years. We also found notable differences in growth patterns between the living trees and those that had recently been wind-thrown. While there were no significant differences between living and wind-thrown trees in response to droughts, heatwaves, or mast years when examining year-to-year growth changes, the wind-thrown trees did exhibit considerably lower overall growth rates and a significant downward trend in growth (BAI -0.57 cm2/year). This difference in growth trends has been apparent since at least the 1980s. Overall, the findings of this study can provide valuable insights for understanding the long-term dynamics of lowland beech forests and their responses to climate change.

Detecting thin adhesive coatings in wood fiber materials with laboratory-based dual-energy computed tomography (DECT)

The distribution and good spreading of adhesive resins is critical for the wood-based panels industry. Full 3D non-destructive characterization is necessary, but methods are limited due to the chemical similarities between the resins and the wood fibers. For X-ray microtomography (\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\mu $$\end{document}μCT), the doping of the resin with a highly attenuating contrast agent is necessary to visualize the resin distribution. However, the attenuation signal remains hard to segment clearly due to partial volume effects in the image, and phase mixing in the material. To help in the identification of the doped resin, dual-energy X-ray CT (DECT) is used to exploit the contrast agent’s K-edge, based on simulations which take into account the polychromatic properties of the X-ray tube and detector response. The contrast agent’s identification with DECT is validated with elemental mapping using scanning electron microscopy combined with energy-dispersive spectroscopy (SEM-EDX) on the surface of a wood-based panel sample, using data fusion between DECT and SEM-EDX. Overall, DECT results here in the first 3D identification of doped resin inside wood fiberboards, guiding the industry’s efforts in further improving the durability of wood-based panels.

CT Image Features Based on the Reconstruction Algorithm for Continuous Blood Purification Combined with Nursing Intervention in the Treatment of Severe Acute Pancreatitis

The aim of the study was to explore the CT images of the iterative reconstruction algorithm to evaluate the curative effect of continuous blood purification combined with nursing intervention in the treatment of severe acute pancreatitis (SAP). A total of 100 patients with SAP treated by the bedside continuous venous hemofiltration purification method in a hospital were selected. The control group (n = 50) was given a routine treatment, and the observation group (n = 50) was treated with the continuous blood filtration mode for blood purification based on the routine treatment. In the CT image scanning of periodontitis patients, the iterative reconstruction algorithm was introduced to reduce image noise, and the CT values under the algorithm were statistically analyzed. The results showed that IL-1, IL-6, and IL-8 after treatment were significantly lower than those before treatment (P < 0.05). The symptoms effectively improved with continuous blood purification combined with nursing intervention in patients with SAP. After the use of the iterative reconstruction algorithm, the image quality, image information, and image MSE significantly improved. The image noise with 50% dose reduction was the lowest, but the reconstruction algorithm improved the low contrast resolution (P < 0.05). CT images based on the reconstruction algorithm can clearly display the lesion characteristics of the patients, and the reconstruction algorithm is feasible to improve the spatial resolution of CT images.

Opportunities in phytochemistry, ecophysiology and wood research via laser ablation direct analysis in real time imaging-mass spectrometry

Analysis of wood transects in a manner that preserves the spatial distribution of the metabolites present is highly desirable to among other things: (1) facilitate ecophysiology studies that reveal the association between chemical make-up and environmental factors or climatic events over time; and (2) investigate the mechanisms of the synthesis and trafficking of small molecules within specialised tissues. While a variety of techniques could be applied to achieve these goals, most remain challenging and impractical. Laser ablation direct analysis in real time imaging-mass spectrometry (LADI-MS) was successfully used to survey the chemical profile of wood, while also preserving the small-molecule spatial distributions. The tree species Entandrophragma candollei Harms, Millettia laurentii DeWild., Pericopsis elata (Harms) Meeuwen, Dalbergia nigra (Vell.) Benth. and Dalbergia normandii Bosser & R.Rabev were analysed. Several compounds were associated with anatomical features. A greater diversity was detected in the vessels and parenchyma compared with the fibres. Analysis of single vessels revealed that the chemical fingerprint used for timber identification is mainly determined by vessel content. Laser ablation direct analysis in real time imaging-mass spectrometry offers unprecedented opportunities to investigate the distribution of metabolites within wood samples, while circumventing the issues associated with previous methods. This technique opens up new vistas for the discovery of small-molecule biomarkers that are linked to environmental events.

X-Ray Computed Tomography for 3D Anatomical Analysis of Resin Ducts

Digital imaging using high-resolution X-ray micro-computed tomography has become a methodology with increasing importance for assessing wood tissues. This chapter aims to describe the use of this nondestructive, noninvasive, and reproducible technique to new researchers interested in analyzing the three-dimensional properties of the resin duct systems in pine stem wood samples.

How Cultural Heritage Studies Based on Dendrochronology Can Be Improved through Two-Way Communication

A significant part of our cultural heritage consists of wood. Research on historical wooden structures and artefacts thereby provides knowledge of people’s daily lives and the society in which they lived. Dendrochronology is a well-established dating method of wood that can also provide valuable knowledge about climate dynamics, environmental changes, silviculture, and cultural transformations. However, dendrochronology comes with some limitations that end users in cultural heritage sciences must be aware of, otherwise their surveys may not be ultimately performed. We have drawn attention to studies in which dendrochronological results have been misinterpreted, over-interpreted, or not fully utilized. On the other hand, a rigorous dendrochronological survey may not respond to the request of information in practice. To bridge this rigour-relevance gap, this article has considered and reviewed both the dendrochronology’s science-perspective and the practitioner’s and end user’s call for context appropriate studies. The material for this study consists of (i) interviews with researchers in dendrochronology and end users represented by cultural heritage researchers with focus on building conservation and building history in Sweden, and (ii) a review of dendrochronological reports and the literature where results from the reports have been interpreted. From these sources we can conclude that a continuous two-way communication between the dendrochronologists and end users often would have resulted in improved cultural heritage studies. The communication can take place in several steps. Firstly, the design of a sampling plan, which according to the current standard for sampling of cultural materials often is required, is an excellent common starting point for communication. Secondly, the survey reports could be developed with a more extensive general outline of the method and guidance in how to interpret the results. Thirdly, the potential contribution from dendrochronology is often underused, foreseeing historical information on local climate, silviculture, and choice of quality of the wooden resource, as the focus most often is the chronological dating. Finally, the interpretation of the results should consider all the available sources where dendrochronology is one stake for a conciliant conclusion.

High-Resolution X-Ray Computed Tomography: A New Workflow for the Analysis of Xylogenesis and Intra-Seasonal Wood Biomass Production

Understanding tree growth and carbon sequestration are of crucial interest to forecast the feedback of forests to climate change. To have a global understanding of the wood formation, it is necessary to develop new methodologies for xylogenesis measurements, valid across diverse wood structures and applicable to both angiosperms and gymnosperms. In this study, the authors present a new workflow to study xylogenesis using high-resolution X-ray computed tomography (HRXCT), which is generic and offers high potential for automatization. The HXRCT-based approach was benchmarked with the current classical approach (microtomy) on three tree species with contrasted wood anatomy (Pinus nigra, Fagus sylvatica, and Quercus robur). HRXCT proved to estimate the relevant xylogenesis parameters (timing, duration, and growth rates) across species with high accuracy. HRXCT showed to be an efficient avenue to investigate tree xylogenesis for a wide range of wood anatomies, structures, and species. HRXCT also showed its potential to provide quantification of intra-annual dynamics of biomass production through high-resolution 3D mapping of wood biomass within the forming growth ring.

Beyond What Meets the Eye: Imaging and Imagining Wood Mechanical-Structural Properties

Wood presents a hierarchical structure, containing features at all length scales: from the tracheids or vessels that make up its cellular structure, through to the microfibrils within the cell walls, down to the molecular architecture of the cellulose, lignin, and hemicelluloses that comprise its chemical makeup. This structure renders it with high mechanical (e.g., modulus and strength) and interesting physical (e.g., optical) properties. A better understanding of this structure, and how it plays a role in governing mechanical and other physical parameters, will help to better exploit this sustainable resource. Here, recent developments on the use of advanced imaging techniques for studying the structural properties of wood in relation to its mechanical properties are explored. The focus is on synchrotron nuclear magnetic resonance spectroscopy, X-ray diffraction, X-ray tomographical imaging, Raman and infrared spectroscopies, confocal microscopy, electron microscopy, and atomic force microscopy. Critical discussion on the role of imaging techniques and how fields are developing rapidly to incorporate both spatial and temporal ranges of analysis is presented.

Three-dimensional imaging of xylem at cell wall level through near field nano holotomography

Detailed imaging of the three-dimensionally complex architecture of xylary plants is important for studying biological and mechanical functions of woody plants. Apart from common two-dimensional microscopy, X-ray micro-computed tomography has been established as a three-dimensional (3D) imaging method for studying the hydraulic function of wooden plants. However, this X-ray imaging method can barely reach the resolution needed to see the minute structures (e.g. pit membrane). To complement the xylem structure with 3D views at the nanoscale level, X-ray near-field nano-holotomography (NFH) was applied to analyze the wood species Pinus sylvestris and Fagus sylvatica. The demanded small specimens required focused ion beam (FIB) application. The FIB milling, however, influenced the image quality through gallium implantation on the cell-wall surfaces. The measurements indicated that NFH is appropriate for imaging wood at nanometric resolution. With a 26 nm voxel pitch, the structure of the cell-wall surface in Pinus sylvestris could be visualized in genuine detail. In wood of Fagus sylvatica, the structure of a pit pair, including the pit membrane, between two neighboring fibrous cells could be traced tomographically.

Functional-morphological analyses of the delicate snap-traps of the aquatic carnivorous waterwheel plant (Aldrovanda vesiculosa) with 2D and 3D imaging techniques

BACKGROUND AND AIMS

The endangered aquatic carnivorous waterwheel plant (Aldrovanda vesiculosa) catches prey with 3-5-mm-long underwater snap-traps. Trapping lasts 10-20 ms, which is 10-fold faster than in its famous sister, the terrestrial Venus flytrap (Dionaea muscipula). After successful capture, the trap narrows further and forms a 'stomach' for the digestion of prey, the so-called 'sickle-shaped cavity'. To date, knowledge is very scarce regarding the deformation process during narrowing and consequent functional morphology of the trap.

METHODS

We performed comparative analyses of virtual 3D histology using computed tomography (CT) and conventional 2D histology. For 3D histology we established a contrasting agent-based preparation protocol tailored for delicate underwater plant tissues.

KEY RESULTS

Our analyses reveal new structural insights into the adaptive architecture of the complex A. vesiculosa snap-trap. In particular, we discuss in detail the arrangement of sensitive trigger hairs inside the trap and present actual 3D representations of traps with prey. In addition, we provide trap volume calculations at different narrowing stages. Furthermore, the motile zone close to the trap midrib, which is thought to promote not only the fast trap closure by hydraulics but also the subsequent trap narrowing and trap reopening, is described and discussed for the first time in its entirety.

CONCLUSIONS

Our research contributes to the understanding of a complex, fast and reversible underwater plant movement and supplements preparation protocols for CT analyses of other non-lignified and sensitive plant structures.

Design and Test of a Microdestructive Tree-Ring Measurement System

Analysis of a tree ring is the primary method for determining the growth and age of a tree. In a microdestructive tree-ring measurement system, the tree under test is drilled with a microdrill at a constant rotating speed to detect the difference in density between the early and late wood, thereby realizing a microdestructive measurement of the tree-ring. The measurement system comprises a microdrill with a diameter of 3 mm, mechanical transmission, direct current (DC) servomotor, stepper motor, and control and detection circuit. The DC servomotor and stepper motor realize rotation and translation of the microdrill, respectively, through mechanical transmission. When the microdrill rotates and drills into the tree, the control and detection circuit samples and acquires the armature current of the DC servomotor, which is proportional to the resistance encountered by the drill bit and reflects the change in the density of the tree. The tree-ring number can be obtained by filtering the sampled original signals of the armature current using a finite impulse response (FIR) filtering algorithm. The annual rings of larch and fir tree discs were measured and tested using the designed system. It was observed that the average annual ring measurement accuracy of the larch discs reached 95.28%, while that of the fir discs was 84.16%. The diameter of the drill hole in the trunk was less than 3 mm after measuring the living wood, thereby achieving a microdestructive measurement of the tree-ring.

Non-Destructive Evaluation Techniques and What They Tell Us about Wood Property Variation

To maximize utilization of our forest resources, detailed knowledge of wood property variation and the impacts this has on end-product performance is required at multiple scales (within and among trees, regionally). As many wood properties are difficult and time-consuming to measure our knowledge regarding their variation is often inadequate as is our understanding of their responses to genetic and silvicultural manipulation. The emergence of many non-destructive evaluation (NDE) methodologies offers the potential to greatly enhance our understanding of the forest resource; however, it is critical to recognize that any technique has its limitations and it is important to select the appropriate technique for a given application. In this review, we will discuss the following technologies for assessing wood properties both in the field: acoustics, Pilodyn, Resistograph and Rigidimeter and the lab: computer tomography (CT) scanning, DiscBot, near infrared (NIR) spectroscopy, radial sample acoustics and SilviScan. We will discuss these techniques, explore their utilization, and list applications that best suit each methodology. As an end goal, NDE technologies will help researchers worldwide characterize wood properties, develop accurate models for prediction, and utilize field equipment that can validate the predictions. The continued advancement of NDE technologies will also allow researchers to better understand the impact on wood properties on product performance.