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Perez RPA, Vezy R, Bordon R, Laisné T, Roques S, Rebolledo MC, Rouan L, Fabre D, Gibert O, De Raissac M. Combining modeling and experimental approaches for developing rice-oil palm agroforestry systems. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:4074-4092. [PMID: 38537200 DOI: 10.1093/jxb/erae137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Accepted: 03/26/2024] [Indexed: 07/11/2024]
Abstract
Monoculture systems in South East Asia are facing challenges due to climate change-induced extreme weather conditions, leading to significant annual production losses in rice and oil palm. To ensure the stability of these crops, innovative strategies like resilient agroforestry systems need to be explored. Converting oil palm (Elaeis guineensis) monocultures to rice (Oryza sativa)-based intercropping systems shows promise, but achieving optimal yields requires adjusting palm density and identifying rice varieties adapted to changes in light quantity and diurnal fluctuation. This paper proposes a methodology that combines a model of light interception with indoor experiments to assess the feasibility of rice-oil palm agroforestry systems. Using a functional-structural plant model of oil palm, the planting design was optimized to maximize transmitted light for rice. Simulation results estimated the potential impact on oil palm carbon assimilation and transpiration. In growth chambers, simulated light conditions were replicated with adjustments to intensity and daily fluctuation. Three light treatments independently evaluated the effects of light intensity and fluctuation on different rice accessions. The simulation study revealed intercropping designs that significantly increased light transmission for rice cultivation with minimal decrease in oil palm densities compared with conventional designs. The results estimated a loss in oil palm productivity of less than 10%, attributed to improved carbon assimilation and water use efficiency. Changes in rice plant architecture were primarily influenced by light quantity, while variations in yield components were attributed to light fluctuations. Different rice accessions exhibited diverse responses to light fluctuations, indicating the potential for selecting genotypes suitable for agroforestry systems.
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Affiliation(s)
- Raphaël P A Perez
- CIRAD, UMR AGAP Institut, F-34398 Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Rémi Vezy
- CIRAD, UMR AMAP, F-34398 Montpellier, France
- AMAP, Univ Montpellier, CNRS, CIRAD, INRAE, IRD, Montpellier, France
| | - Romain Bordon
- CIRAD, UMR AGAP Institut, F-34398 Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Thomas Laisné
- CIRAD, UMR AGAP Institut, F-34398 Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Sandrine Roques
- CIRAD, UMR AGAP Institut, F-34398 Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Maria-Camila Rebolledo
- CIRAD, UMR AGAP Institut, F-34398 Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Lauriane Rouan
- CIRAD, UMR AGAP Institut, F-34398 Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Denis Fabre
- CIRAD, UMR AGAP Institut, F-34398 Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Olivier Gibert
- CIRAD, UMR AGAP Institut, F-34398 Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Marcel De Raissac
- CIRAD, UMR AGAP Institut, F-34398 Montpellier, France
- UMR AGAP Institut, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
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Ladux FJ, González CV, Trentacoste ER, Searles PS, Rousseaux MC. Morphological and Pigment Responses to Far-Red and Photosynthetically Active Radiation in an Olive Cultivar Suitable for Super-High-Density Orchards. PLANTS (BASEL, SWITZERLAND) 2024; 13:1822. [PMID: 38999661 DOI: 10.3390/plants13131822] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Revised: 06/15/2024] [Accepted: 06/26/2024] [Indexed: 07/14/2024]
Abstract
Plant density is increasing in modern olive orchards to improve yields and facilitate mechanical harvesting. However, greater density can reduce light quantity and modify its quality. The objective was to evaluate plant morphology, biomass, and photosynthetic pigments under different red/far-red ratios and photosynthetically active radiation (PAR) combinations in an olive cultivar common to super-high-density orchards. In a greenhouse, young olive trees (cv. Arbequina) were exposed to low (L) or high (H) PAR with or without lateral FR supplementation (L+FR, L-FR, H+FR, H-FR) using neutral-density shade cloth and FR light-emitting diode (LED) modules. Total plant and individual organ biomass were much lower in plants under low PAR than under high PAR, with no response to +FR supplementation. In contrast, several plant morphological traits, such as main stem elongation, individual leaf area, and leaf angle, did respond to both low PAR and +FR. Total chlorophyll content decreased with +FR when PAR was low, but not when PAR was high (i.e., a significant FR*PAR interaction). When evaluating numerous plant traits together, a greater response to +FR under low PAR than under high PAR appeared to occur. These findings suggest that consideration of light quality in addition to quantity facilitates a fuller understanding of olive tree responses to a light environment. The +FR responses found here could lead to changes in hedgerow architecture and light distribution within the hedgerow.
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Affiliation(s)
- Federico J Ladux
- Centro Regional de Investigaciones Científicas y Transferencia Tecnológica de La Rioja (CRILAR-Provincia de La Rioja-UNLaR-SEGEMAR-UNCa-CONICET), Entre Ríos y Mendoza s/n, Anillaco 5301, La Rioja, Argentina
- Departamento de Ciencias Exactas, Físicas y Naturales (DACEF y N), Universidad Nacional de La Rioja, Av. Luis M. De la Fuente s/n, Ciudad Universitaria de la Ciencia y de la Técnica, La Rioja 5300, La Rioja, Argentina
| | - Carina V González
- Instituto de Biología Agrícola de Mendoza (IBAM), FCA UNCuyo-CONICET, Almirante Brown 500, Chacras de Coria, Luján de Cuyo 5505, Mendoza, Argentina
- Facultad de Ciencias Agrarias, Universidad Nacional de Cuyo, Almirante Brown 500, Chacras de Coria, Luján de Cuyo 5505, Mendoza, Argentina
| | - Eduardo R Trentacoste
- Instituto Nacional de Tecnología Agropecuaria (INTA), Estación Experimental Agropecuaria La Consulta, Mendoza 5567, Argentina
| | - Peter S Searles
- Centro Regional de Investigaciones Científicas y Transferencia Tecnológica de La Rioja (CRILAR-Provincia de La Rioja-UNLaR-SEGEMAR-UNCa-CONICET), Entre Ríos y Mendoza s/n, Anillaco 5301, La Rioja, Argentina
| | - M Cecilia Rousseaux
- Centro Regional de Investigaciones Científicas y Transferencia Tecnológica de La Rioja (CRILAR-Provincia de La Rioja-UNLaR-SEGEMAR-UNCa-CONICET), Entre Ríos y Mendoza s/n, Anillaco 5301, La Rioja, Argentina
- Departamento de Ciencias Exactas, Físicas y Naturales (DACEF y N), Universidad Nacional de La Rioja, Av. Luis M. De la Fuente s/n, Ciudad Universitaria de la Ciencia y de la Técnica, La Rioja 5300, La Rioja, Argentina
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Jeong M, Bae J, Yoo G. Urban roadside greenery as a carbon sink: Systematic assessment considering understory shrubs and soil respiration. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 927:172286. [PMID: 38588739 DOI: 10.1016/j.scitotenv.2024.172286] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Revised: 04/01/2024] [Accepted: 04/05/2024] [Indexed: 04/10/2024]
Abstract
Roadside greenery is an efficient strategy for maximizing ecosystem services, including carbon sequestration in urban settings. However, the quantification of carbon sequestration is not comprehensive because understory shrubs and soil respiration have not been thoroughly considered. We developed an integrated methodology that combined field measurements and greenhouse incubation to comprehensively assess carbon sequestration in roadside greenery systems. The system was defined as an 8 m long section comprising a single tree (Zelkova serrata), 79 shrubs (Euonymus japonicus), and soil. Annual carbon uptake by a tree was estimated using an allometric equation derived from an official government report. For shrubs, carbon uptake was measured in the field by monitoring CO2 concentration change in the chamber enclosing the leaves and stems. Annual carbon uptake by shrubs was estimated by using the regression equation among carbon uptake, air temperature, and photosynthetically active radiation. We also estimated shrub root respiration by combining net primary production (NPP) from the greenhouse incubation and measured pruning effect in the field. This enabled us to differentiate heterotrophic respiration from the total soil respiration. The overall methodology accurately assessed net ecosystem production (NEP) from the roadside greenery system, which is 0.528 kg C m-2 yr-1. If this figure is extended to all roads in the target city, it can offset daily carbon emitted from the total registered passenger vehicles in the target city. Considering that shrubs sequester an amount equivalent to 29.3 % of the carbon sequestered by tree species, the current greenhouse gas inventory should include shrubs as an important carbon sink. As we also revealed that roadside soil has high carbon vulnerability, proper soil management is needed to enhance NEP. Our systematic approach evaluating the carbon balance within the roadside greenery system can be applied to other cities, contributing to enhance global understanding of urban carbon cycle.
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Affiliation(s)
- Minseop Jeong
- Department of Applied Environmental Science, Kyung Hee University, Yongin, Republic of Korea
| | - Jeehwan Bae
- Department of Applied Environmental Science, Kyung Hee University, Yongin, Republic of Korea
| | - Gayoung Yoo
- Department of Environmental Science and Environmental Engineering, Kyung Hee University, 1732, Deogyeong-daero, Giheung-gu, Yongin-si, Gyeonggi-do 446701, Republic of Korea.
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Xing L, Quan J, Zhang S, Liu X, Bai H, Yue M. Changes induced by parental neighboring touch in the clonal plant Glechoma longituba depend on the light environment. FRONTIERS IN PLANT SCIENCE 2024; 15:1358924. [PMID: 38831907 PMCID: PMC11146198 DOI: 10.3389/fpls.2024.1358924] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Accepted: 04/10/2024] [Indexed: 06/05/2024]
Abstract
Introduction Touch by neighboring plants is a common but overlooked environmental variable for plants, especially in dense vegetation. In addition, shade is inevitable for understory plants. The growth performance of clonal plant to the interaction between thigmomorphogenesis and shade response, and their impact on light adaptability is still unknown. Methods At the present study, parental ramets of Glechoma longituba were exposed to two conditions (neighboring touch and shade), and their offspring ramets were in ambient or shaded environment. The phenotype and growth of parental and offspring ramets were analyzed. Results The results showed that neighboring touch of parental ramets regulated the performance of offspring ramets, while the effect depended on the light environment. The parental neighboring touch occurring in ambient environment suppressed the expansion of leaf organ, showed as a shorter petiole and smaller leaf area. Moreover, G. longituba exhibited both shade avoidance and shade tolerance characters to shaded environment, such as increased leaf area ratio and leaf mass ratio, longer specific petiole length and specific stolon length. It was notable that these characters of shade response could be promoted by parental neighboring touch to some extent. Additionally, parental light environment plays an important role in offspring growth, parent with ambient light always had well-grown offspring whatever the light condition of offspring, but the growth of offspring whose parent in shaded environment was inhibited. Finally, for the offspring with shaded environment, the touch between parental ramets in shade environment showed a disadvantage on their growth, but the influence of the touch between parental ramets in ambient environment was slight. Discussion Overall, the interaction of parental neighboring touch and shade environment complicate the growth of understory plants, the performance of plants is the integrated effect of both. These findings are conducive to an in-depth understanding of the environmental adaptation of plants.
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Affiliation(s)
- Linya Xing
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Northwest University, Xi’an, China
| | - Jiaxin Quan
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Northwest University, Xi’an, China
| | - Shuqi Zhang
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Northwest University, Xi’an, China
| | - Xiao Liu
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Northwest University, Xi’an, China
| | - Hua Bai
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Northwest University, Xi’an, China
| | - Ming Yue
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, Northwest University, Xi’an, China
- Xi’an Botanical Garden of Shaanxi Province, Institute of Botany of Shaanxi Province, Xi’an, China
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Xu L, Pan W, Yang G, Tang X, Martin RM, Liu G, Zhong C. Impact of light quality on freshwater phytoplankton community in outdoor mesocosms. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:58536-58548. [PMID: 34115299 DOI: 10.1007/s11356-021-14812-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Accepted: 06/07/2021] [Indexed: 06/12/2023]
Abstract
In shallow lakes, wind wave turbulence alters underwater spectral composition, but the influence of this phenomenon on phytoplankton community structure is poorly understood. We used 100L mesocosms to investigate the influence of light quality on a natural phytoplankton community collected from Taihu Lake in China. The communities in mesocosms were exposed to sunlight filtered for white, blue, green, and red light, while wave-making pumps simulated wind wave turbulence similar to Taihu Lake. Over the course of experiment, each filtered light reduced the total phytoplankton abundance compared to white light. The mean abundance of phytoplankton in controls was 1.72, 1.78, and 7.89 times of that in the red, blue, and green light treatments. Red, blue, and green light significantly promoted the growth of cyanobacteria, green algae, and diatoms, respectively, and induced successional change of the phytoplankton species under the tested conditions. The proportion of Microcystis to total phytoplankton abundance in controls and red light shifted from 87.09% at the beginning to 37.95% and 56.30% at the end of the experiment, respectively, and maintained its dominance, whereas Microcystis lost its dominance and was replaced by Scenedesmus (53.78%) and Synedra (53.18%) in the blue and green light, respectively. Given the process of how these phytoplankton compete in designated spectrum, exploring these influences could help provide new insights into the dominance formation of toxic cyanobacteria.
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Affiliation(s)
- Lei Xu
- School of Environment and Civil Engineering, Jiangnan University, Wuxi, 214122, China
| | - Wenwen Pan
- School of Environment and Civil Engineering, Jiangnan University, Wuxi, 214122, China
| | - Guijun Yang
- School of Environment and Civil Engineering, Jiangnan University, Wuxi, 214122, China.
| | - Xiangming Tang
- Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Robbie M Martin
- Department of Microbiology, The University of Tennessee, Knoxville, TN, 37996, USA
| | - Guofeng Liu
- Freshwater Fisheries Research Center, CAFS, Wuxi, 214128, China
| | - Chunni Zhong
- Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China
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Zhang N, Evers JB, Anten NPR, Marcelis LFM. Turning plant interactions upside down: Light signals from below matter. PLANT, CELL & ENVIRONMENT 2021; 44:1111-1118. [PMID: 32920859 PMCID: PMC8048918 DOI: 10.1111/pce.13886] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Revised: 08/19/2020] [Accepted: 09/08/2020] [Indexed: 06/11/2023]
Abstract
Plants grow in dense stands receive light signals of varying strength from all directions. Plant responses to light signals from below should be considered in light‐mediated plant interactions, as their consequences for plant performance differ among ecological and agricultural settings. Where to perceive, how to integrate and what type of responses can be induced by light signals from below are major questions that need to be solved to expand our understanding of light‐mediated plant interactions.
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Affiliation(s)
- Ningyi Zhang
- Horticulture and Product Physiology Group, Department of Plant SciencesWageningen UniversityWageningenThe Netherlands
| | - Jochem B. Evers
- Centre for Crop Systems Analysis, Department of Plant SciencesWageningen UniversityWageningenThe Netherlands
| | - Niels P. R. Anten
- Centre for Crop Systems Analysis, Department of Plant SciencesWageningen UniversityWageningenThe Netherlands
| | - Leo F. M. Marcelis
- Horticulture and Product Physiology Group, Department of Plant SciencesWageningen UniversityWageningenThe Netherlands
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Zhang N, van Westreenen A, He L, Evers JB, Anten NPR, Marcelis LFM. Light from below matters: Quantifying the consequences of responses to far-red light reflected upwards for plant performance in heterogeneous canopies. PLANT, CELL & ENVIRONMENT 2021; 44:102-113. [PMID: 32490539 PMCID: PMC7818183 DOI: 10.1111/pce.13812] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2019] [Revised: 05/22/2020] [Accepted: 05/27/2020] [Indexed: 05/24/2023]
Abstract
In vegetation stands, plants receive red to far-red ratio (R:FR) signals of varying strength from all directions. However, plant responses to variations in R:FR reflected from below have been largely ignored despite their potential consequences for plant performance. Using a heterogeneous rose canopy, which consists of bent shoots down in the canopy and vertically growing upright shoots, we quantified upward far-red reflection by bent shoots and its consequences for upright shoot architecture. With a three-dimensional plant model, we assessed consequences of responses to R:FR from below for plant photosynthesis. Bent shoots reflected substantially more far-red than red light, causing reduced R:FR in light reflected upwards. Leaf inclination angles increased in upright shoots which received low R:FR reflected from below. The increased leaf angle led to an increase in simulated plant photosynthesis only when this low R:FR was reflected off their own bent shoots and not when it reflected off neighbour bent shoots. We conclude that plant response to R:FR from below is an under-explored phenomenon which may have contrasting consequences for plant performance depending on the type of vegetation or crop system. The responses are beneficial for performance only when R:FR is reflected by lower foliage of the same plants.
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Affiliation(s)
- Ningyi Zhang
- Horticulture and Product Physiology Group, Department of Plant SciencesWageningen UniversityWageningenThe Netherlands
- Centre for Crop Systems Analysis, Department of Plant SciencesWageningen UniversityWageningenThe Netherlands
| | - Arian van Westreenen
- Horticulture and Product Physiology Group, Department of Plant SciencesWageningen UniversityWageningenThe Netherlands
- Centre for Crop Systems Analysis, Department of Plant SciencesWageningen UniversityWageningenThe Netherlands
| | - Lizhong He
- Horticulture and Product Physiology Group, Department of Plant SciencesWageningen UniversityWageningenThe Netherlands
| | - Jochem B. Evers
- Centre for Crop Systems Analysis, Department of Plant SciencesWageningen UniversityWageningenThe Netherlands
| | - Niels P. R. Anten
- Centre for Crop Systems Analysis, Department of Plant SciencesWageningen UniversityWageningenThe Netherlands
| | - Leo F. M. Marcelis
- Horticulture and Product Physiology Group, Department of Plant SciencesWageningen UniversityWageningenThe Netherlands
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Louarn G, Song Y. Two decades of functional-structural plant modelling: now addressing fundamental questions in systems biology and predictive ecology. ANNALS OF BOTANY 2020; 126:501-509. [PMID: 32725187 PMCID: PMC7489058 DOI: 10.1093/aob/mcaa143] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Accepted: 07/25/2020] [Indexed: 05/16/2023]
Abstract
BACKGROUND Functional-structural plant models (FSPMs) explore and integrate relationships between a plant's structure and processes that underlie its growth and development. In the last 20 years, scientists interested in functional-structural plant modelling have expanded greatly the range of topics covered and now handle dynamical models of growth and development occurring from the microscopic scale, and involving cell division in plant meristems, to the macroscopic scales of whole plants and plant communities. SCOPE The FSPM approach occupies a central position in plant science; it is at the crossroads of fundamental questions in systems biology and predictive ecology. This special issue of Annals of Botany features selected papers on critical areas covered by FSPMs and examples of comprehensive models that are used to solve theoretical and applied questions, ranging from developmental biology to plant phenotyping and management of plants for agronomic purposes. Altogether, they offer an opportunity to assess the progress, gaps and bottlenecks along the research path originally foreseen for FSPMs two decades ago. This review also allows discussion of current challenges of FSPMs regarding (1) integration of multidisciplinary knowledge, (2) methods for handling complex models, (3) standards to achieve interoperability and greater genericity and (4) understanding of plant functioning across scales. CONCLUSIONS This approach has demonstrated considerable progress, but has yet to reach its full potential in terms of integration and heuristic knowledge production. The research agenda of functional-structural plant modellers in the coming years should place a greater emphasis on explaining robust emergent patterns, and on the causes of possible deviation from it. Modelling such patterns could indeed fuel both generic integration across scales and transdisciplinary transfer. In particular, it could be beneficial to emergent fields of research such as model-assisted phenotyping and predictive ecology in managed ecosystems.
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Affiliation(s)
| | - Youhong Song
- Anhui Agricultural University, School of Agronomy, Hefei, Anhui Province, PR China
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Chen T, Zhang H, Zeng R, Wang X, Huang L, Wang L, Wang X, Zhang L. Shade Effects on Peanut Yield Associate with Physiological and Expressional Regulation on Photosynthesis and Sucrose Metabolism. Int J Mol Sci 2020; 21:ijms21155284. [PMID: 32722456 PMCID: PMC7432592 DOI: 10.3390/ijms21155284] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Revised: 07/15/2020] [Accepted: 07/20/2020] [Indexed: 01/07/2023] Open
Abstract
Intercropping improves land utilization with more crops grown together; however, shorter crops in intercropping experience stress, being shaded by the taller crops. Systematic changes in phenotype, physiology, yield, and gene regulation under shade stress in peanut are largely unknown, although shade responses have been well analyzed in model plants. We exposed peanut plants to simulated 40% and 80% shade for 15 and 30 days at the seedling stage, flowering stage, and both stages. Shade caused the increased elongation growth of the main stem, internode, and leaf, and elongation was positively associated with auxin levels. Shade stress reduced peanut yield. Further comparative RNA-seq analyses revealed expressional changes in many metabolism pathways and common core sets of expressional regulations in all shade treatments. Expressional downregulation of most genes for light-harvesting and photosynthesis agreed with the observed decreased parameters of photosynthesis processes. Other major regulations included expressional downregulation of most core genes in the sucrose and starch metabolism, and growth-promoting genes in plant hormone signal pathways. Together, the results advance our understanding of physiological and molecular regulation in shade avoidance in peanut, which could guide the breeding designing in the intercropping system.
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Affiliation(s)
- Tingting Chen
- Guangdong Key Laboratory of Plant Molecular Breeding, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China; (T.C.); (H.Z.); (R.Z.); (X.W.); (L.H.); (L.W.)
| | - Huajian Zhang
- Guangdong Key Laboratory of Plant Molecular Breeding, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China; (T.C.); (H.Z.); (R.Z.); (X.W.); (L.H.); (L.W.)
| | - Ruier Zeng
- Guangdong Key Laboratory of Plant Molecular Breeding, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China; (T.C.); (H.Z.); (R.Z.); (X.W.); (L.H.); (L.W.)
| | - Xinyue Wang
- Guangdong Key Laboratory of Plant Molecular Breeding, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China; (T.C.); (H.Z.); (R.Z.); (X.W.); (L.H.); (L.W.)
| | - Luping Huang
- Guangdong Key Laboratory of Plant Molecular Breeding, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China; (T.C.); (H.Z.); (R.Z.); (X.W.); (L.H.); (L.W.)
| | - Leidi Wang
- Guangdong Key Laboratory of Plant Molecular Breeding, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China; (T.C.); (H.Z.); (R.Z.); (X.W.); (L.H.); (L.W.)
| | - Xuewen Wang
- Department of Genetics, University of Georgia, Athens, GA 30602, USA
- Correspondence: (X.W.); (L.Z.)
| | - Lei Zhang
- Guangdong Key Laboratory of Plant Molecular Breeding, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, South China Agricultural University, Guangzhou 510642, China; (T.C.); (H.Z.); (R.Z.); (X.W.); (L.H.); (L.W.)
- Correspondence: (X.W.); (L.Z.)
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