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Seaborn T, Landguth EL, Caudill CC. Simulating plasticity as a framework for understanding habitat selection and its role in adaptive capacity and extinction risk through an expansion of CDMetaPOP. Mol Ecol Resour 2023; 23:1458-1472. [PMID: 37081173 PMCID: PMC11081408 DOI: 10.1111/1755-0998.13799] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Revised: 03/29/2023] [Accepted: 03/31/2023] [Indexed: 04/22/2023]
Abstract
Adaptive capacity can present challenges for modelling as it encompasses multiple ecological and evolutionary processes such as natural selection, genetic drift, gene flow and phenotypic plasticity. Spatially explicit, individual-based models provide an outlet for simulating these complex interacting eco-evolutionary processes. We expanded the existing Cost-Distance Meta-POPulation (CDMetaPOP) framework with inducible plasticity modelled as a habitat selection behaviour, using temperature or habitat quality variables, with a genetically based selection threshold conditioned on past individual experience. To demonstrate expected results in the new module, we simulated hypothetical populations and then evaluated model performance in populations of redband trout (Oncorhynchus mykiss gairdneri) across three watersheds where temperatures induce physiological stress in parts of the stream network. We ran simulations using projected warming stream temperature data under four scenarios for alleles that: (1) confer thermal tolerance, (2) bestow plastic habitat selection, (3) give both thermal tolerance and habitat selection preference and (4) do not provide either thermal tolerance or habitat selection. Inclusion of an adaptive allele decreased declines in population sizes, but this impact was greatly reduced in the relatively cool stream networks. As anticipated with the new module, high-temperature patches remained unoccupied by individuals with the allele operating plastically after exposure to warm temperatures. Using complete habitat avoidance above the stressful temperature threshold, habitat selection reduced the overall population size due to the opportunity cost of avoiding areas with increased, but not guaranteed, mortality. Inclusion of plasticity within CDMetaPOP will provide the potential for genetic or plastic traits and 'rescue' to affect eco-evolutionary dynamics for research questions and conservation applications.
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Affiliation(s)
- Travis Seaborn
- Department of Fish and Wildlife Sciences, University of Idaho, Moscow, Idaho, USA
- School of Natural Resource Sciences, North Dakota State University, Fargo, North Dakota, USA
| | - Erin L. Landguth
- Computational Ecology Laboratory & Center for Population Health Research, University of Montana, Missoula, Montana, USA
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2
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Hooven ND, Springer MT, Nielsen CK, Schauber EM. Influence of natal habitat preference on habitat selection during extra-home range movements in a large ungulate. Ecol Evol 2023; 13:e9794. [PMID: 36760707 PMCID: PMC9897958 DOI: 10.1002/ece3.9794] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2022] [Revised: 01/14/2023] [Accepted: 01/18/2023] [Indexed: 02/05/2023] Open
Abstract
Natal habitat preference induction (NHPI) occurs when animals exhibit a preference for new habitat that is similar to that which they experienced in their natal environment, potentially leading to post-dispersal success. While the study of NHPI is typically focused on post-settlement home ranges, we investigated how this behavior may manifest during extra-home range movements (EHRMs), both to identify exploratory prospecting behavior and assess how natal habitat cues may influence path selection before settlement. We analyzed GPS collar relocation data collected during 79 EHRMs made by 34 juvenile and subadult white-tailed deer (Odocoileus virginianus) across an agricultural landscape with highly fragmented forests in Illinois, USA. We developed a workflow to measure multidimensional natal habitat dissimilarity for each EHRM relocation and fit step-selection functions to evaluate whether natal habitat similarity explained habitat selection along movement paths. Across seasons, selection for natal habitat similarity was generally weak during excursive movements, but strong during dispersals, indicating that NHPI is manifested in dispersal habitat selection in this study system and bolstering the hypothesis that excursive movements differ functionally from dispersal. Our approach for extending the NHPI hypothesis to behavior during EHRMs can be applied to a variety of taxa and can expand our understanding of how individual behavioral variation and early life experience may shape connectivity and resistance across landscapes.
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Affiliation(s)
- Nathan D. Hooven
- School of the EnvironmentWashington State UniversityPullmanWashingtonUSA,Department of Forestry and Natural ResourcesUniversity of KentuckyLexingtonKentuckyUSA
| | - Matthew T. Springer
- Department of Forestry and Natural ResourcesUniversity of KentuckyLexingtonKentuckyUSA
| | - Clayton K. Nielsen
- Cooperative Wildlife Research Laboratory and Department of ForestrySouthern Illinois University CarbondaleCarbondaleIllinoisUSA
| | - Eric M. Schauber
- Illinois Natural History Survey, Prairie Research InstituteUniversity of Illinois Urbana‐ChampaignChampaignIllinoisUSA
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3
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Webber QMR, Albery GF, Farine DR, Pinter-Wollman N, Sharma N, Spiegel O, Vander Wal E, Manlove K. Behavioural ecology at the spatial-social interface. Biol Rev Camb Philos Soc 2023; 98:868-886. [PMID: 36691262 DOI: 10.1111/brv.12934] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Revised: 01/09/2023] [Accepted: 01/10/2023] [Indexed: 01/25/2023]
Abstract
Spatial and social behaviour are fundamental aspects of an animal's biology, and their social and spatial environments are indelibly linked through mutual causes and shared consequences. We define the 'spatial-social interface' as intersection of social and spatial aspects of individuals' phenotypes and environments. Behavioural variation at the spatial-social interface has implications for ecological and evolutionary processes including pathogen transmission, population dynamics, and the evolution of social systems. We link spatial and social processes through a foundation of shared theory, vocabulary, and methods. We provide examples and future directions for the integration of spatial and social behaviour and environments. We introduce key concepts and approaches that either implicitly or explicitly integrate social and spatial processes, for example, graph theory, density-dependent habitat selection, and niche specialization. Finally, we discuss how movement ecology helps link the spatial-social interface. Our review integrates social and spatial behavioural ecology and identifies testable hypotheses at the spatial-social interface.
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Affiliation(s)
- Quinn M R Webber
- Department of Integrative Biology, University of Guelph, 50 Stone Road East, Guelph, ON, N1G 2W1, Canada
| | - Gregory F Albery
- Department of Biology, Georgetown University, 37th and O Streets, Washington, DC, 20007, USA.,Wissenschaftskolleg zu Berlin, Wallotstraße 19, 14193, Berlin, Germany.,Leibniz Institute of Freshwater Ecology and Inland Fisheries, Müggelseedamm 310, 12587, Berlin, Germany
| | - Damien R Farine
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland.,Department of Collective Behavior, Max Planck Institute of Animal Behavior, Universitatsstraße 10, 78464, Constance, Germany.,Division of Ecology and Evolution, Research School of Biology, Australian National University, 46 Sullivans Creek Road, Canberra, ACT, 2600, Australia
| | - Noa Pinter-Wollman
- Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA, 90095, USA
| | - Nitika Sharma
- Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA, 90095, USA
| | - Orr Spiegel
- School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, 69978, Israel
| | - Eric Vander Wal
- Department of Biology, Memorial University, St. John's, NL, A1C 5S7, Canada
| | - Kezia Manlove
- Department of Wildland Resources and Ecology Center, Utah State University, 5200 Old Main Hill, Logan, UT, 84322, USA
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4
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Gallagher CA, Chudzinska M, Larsen-Gray A, Pollock CJ, Sells SN, White PJC, Berger U. From theory to practice in pattern-oriented modelling: identifying and using empirical patterns in predictive models. Biol Rev Camb Philos Soc 2021; 96:1868-1888. [PMID: 33978325 DOI: 10.1111/brv.12729] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2020] [Revised: 04/14/2021] [Accepted: 04/16/2021] [Indexed: 01/21/2023]
Abstract
To robustly predict the effects of disturbance and ecosystem changes on species, it is necessary to produce structurally realistic models with high predictive power and flexibility. To ensure that these models reflect the natural conditions necessary for reliable prediction, models must be informed and tested using relevant empirical observations. Pattern-oriented modelling (POM) offers a systematic framework for employing empirical patterns throughout the modelling process and has been coupled with complex systems modelling, such as in agent-based models (ABMs). However, while the production of ABMs has been rising rapidly, the explicit use of POM has not increased. Challenges with identifying patterns and an absence of specific guidelines on how to implement empirical observations may limit the accessibility of POM and lead to the production of models which lack a systematic consideration of reality. This review serves to provide guidance on how to identify and apply patterns following a POM approach in ABMs (POM-ABMs), specifically addressing: where in the ecological hierarchy can we find patterns; what kinds of patterns are useful; how should simulations and observations be compared; and when in the modelling cycle are patterns used? The guidance and examples provided herein are intended to encourage the application of POM and inspire efficient identification and implementation of patterns for both new and experienced modellers alike. Additionally, by generalising patterns found especially useful for POM-ABM development, these guidelines provide practical help for the identification of data gaps and guide the collection of observations useful for the development and verification of predictive models. Improving the accessibility and explicitness of POM could facilitate the production of robust and structurally realistic models in the ecological community, contributing to the advancement of predictive ecology at large.
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Affiliation(s)
- Cara A Gallagher
- Department of Plant Ecology and Conservation Biology, University of Potsdam, Am Mühlenberg 3, Potsdam, 14469, Germany.,Department of Bioscience, Aarhus University, Frederiksborgvej 399, Roskilde, 4000
| | - Magda Chudzinska
- Sea Mammal Research Unit, Scottish Oceans Institute, University of St Andrews, St Andrews, KY16 9ST, U.K
| | - Angela Larsen-Gray
- Department of Integrative Biology, University of Wisconsin-Madison, 250 N. Mills St., Madison, WI, 53706, U.S.A
| | | | - Sarah N Sells
- Montana Cooperative Wildlife Research Unit, The University of Montana, 205 Natural Sciences, Missoula, MT, 59812, U.S.A
| | - Patrick J C White
- School of Applied Sciences, Edinburgh Napier University, 9 Sighthill Ct., Edinburgh, EH11 4BN, U.K
| | - Uta Berger
- Institute of Forest Growth and Computer Science, Technische Universität Dresden, Dresden, 01062, Germany
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Day CC, McCann NP, Zollner PA, Gilbert JH, MacFarland DM. Temporal plasticity in habitat selection criteria explains patterns of animal dispersal. Behav Ecol 2019; 30:528-540. [PMID: 30971861 PMCID: PMC6450207 DOI: 10.1093/beheco/ary193] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Revised: 09/21/2018] [Accepted: 12/14/2018] [Indexed: 11/15/2022] Open
Abstract
Patterns of dispersal behavior are often driven by the composition and configuration of suitable habitat in a matrix of unsuitable habitat. Interactions between animal behavior and landscapes can therefore influence population dynamics, population and species distributions, population genetic structure, and the evolution of behavior. Spatially explicit individual-based models (IBMs) are ideal tools for exploring the effects of landscape structure on dispersal. We developed an empirically parameterized IBM in the modeling framework SEARCH to simulate dispersal of translocated American martens in Wisconsin. We tested the hypothesis that a time-limited disperser should be willing to settle in lower quality habitat over time. To evaluate model performance, we used a pattern-oriented modeling approach. Our best model matched all empirical dispersal patterns (e.g., dispersal distance) except time to settlement. This model incorporated a required search phase as well as the mechanism for declining habitat selectivity over time, which represents the first demonstration of this hypothesis for a vertebrate species. We suggest that temporal plasticity in habitat selectivity allows individuals to maximize fitness by making a tradeoff between habitat quality and risk of mortality. Our IBM is pragmatic in that it addresses a management need for a species of conservation concern. However, our model is also paradigmatic in that we explicitly tested a theory of dispersal behavior. Linking these 2 approaches to ecological modeling can further the utility of individual-based modeling and provide direction for future theoretical and empirical work on animal behavior.
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Affiliation(s)
- Casey C Day
- Department of Forestry and Natural Resources, Purdue University, West Lafayette, IN, USA
| | - Nicholas P McCann
- Department of Forestry and Natural Resources, Purdue University, West Lafayette, IN, USA
| | - Patrick A Zollner
- Department of Forestry and Natural Resources, Purdue University, West Lafayette, IN, USA
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