Midlik A, Vařeková IH, Hutař J, Chareshneu A, Berka K, Svobodová R. OverProt: secondary structure consensus for protein families.
Bioinformatics 2022;
38:3648-3650. [PMID:
35674374 DOI:
10.1093/bioinformatics/btac384]
[Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Revised: 04/24/2022] [Accepted: 06/05/2022] [Indexed: 11/14/2022] Open
Abstract
SUMMARY
Every protein family has a set of characteristic secondary structures. However, due to individual variations, a single structure is not enough to represent the whole family. OverProt can create a secondary structure consensus, showing the general fold of the family as well as its variation. Our server provides precomputed results for all CATH superfamilies and user-defined computations, visualized by an interactive viewer, which shows the SSE type, length, frequency of occurrence, spatial variability, and β-connectivity.
AVAILABILITY AND IMPLEMENTATION
OverProt Server is freely available at https://overprot.ncbr.muni.cz.
SUPPLEMENTARY INFORMATION
Supplementary data are available at Bioinformatics online.
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