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For: Vallender EJ, Paschall JE, Malcom CM, Lahn BT, Wyckoff GJ. SPEED: a molecular-evolution-based database of mammalian orthologous groups. Bioinformatics 2006;22:2835-7. [PMID: 16966361 DOI: 10.1093/bioinformatics/btl471] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Wilson J, Staley JM, Wyckoff GJ. Extinction of chromosomes due to specialization is a universal occurrence. Sci Rep 2020;10:2170. [PMID: 32034231 PMCID: PMC7005762 DOI: 10.1038/s41598-020-58997-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2019] [Accepted: 01/20/2020] [Indexed: 11/09/2022]  Open
2
Xu L, Kuo J, Liu JK, Wong TY. Bacterial phylogenetic tree construction based on genomic translation stop signals. MICROBIAL INFORMATICS AND EXPERIMENTATION 2012;2:6. [PMID: 22651236 PMCID: PMC3466146 DOI: 10.1186/2042-5783-2-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/23/2012] [Accepted: 04/15/2012] [Indexed: 11/10/2022]
3
Popendorf K, Tsuyoshi H, Osana Y, Sakakibara Y. Murasaki: a fast, parallelizable algorithm to find anchors from multiple genomes. PLoS One 2010;5:e12651. [PMID: 20885980 PMCID: PMC2945767 DOI: 10.1371/journal.pone.0012651] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2010] [Accepted: 08/06/2010] [Indexed: 12/24/2022]  Open
4
Dorus S, Wasbrough ER, Busby J, Wilkin EC, Karr TL. Sperm proteomics reveals intensified selection on mouse sperm membrane and acrosome genes. Mol Biol Evol 2010;27:1235-46. [PMID: 20080865 DOI: 10.1093/molbev/msq007] [Citation(s) in RCA: 88] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
5
Hachiya T, Osana Y, Popendorf K, Sakakibara Y. Accurate identification of orthologous segments among multiple genomes. Bioinformatics 2009;25:853-60. [DOI: 10.1093/bioinformatics/btp070] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
6
Bag SK, Paul S, Ghosh S, Dutta C. Reverse polarization in amino acid and nucleotide substitution patterns between human-mouse orthologs of two compositional extrema. DNA Res 2007;14:141-54. [PMID: 17895298 PMCID: PMC2533592 DOI: 10.1093/dnares/dsm015] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
7
Vallender EJ, Lahn BT. Uncovering the mutation-fixation correlation in short lineages. BMC Evol Biol 2007;7:168. [PMID: 17883872 PMCID: PMC2071921 DOI: 10.1186/1471-2148-7-168] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2007] [Accepted: 09/21/2007] [Indexed: 11/10/2022]  Open
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