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Lu Y, Lu F, Zhang J, Tang Q, Yang D, Liu Y. Understanding the sources, function, and irreplaceable role of cobamides in organohalide-respiring bacteria. Front Microbiol 2024; 15:1435674. [PMID: 39139376 PMCID: PMC11321594 DOI: 10.3389/fmicb.2024.1435674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2024] [Accepted: 06/25/2024] [Indexed: 08/15/2024] Open
Abstract
Halogenated organic compounds are persistent pollutants that pose a serious threat to human health and the safety of ecosystems. Cobamides are essential cofactors for reductive dehalogenases (RDase) in organohalide-respiring bacteria (OHRB), which catalyze the dehalogenation process. This review systematically summarizes the impact of cobamides on organohalide respiration. The catalytic processes of cobamide in dehalogenation processes are also discussed. Additionally, we examine OHRB, which cannot synthesize cobamide and must obtain it from the environment through a salvage pathway; the co-culture with cobamide producer is more beneficial and possible. This review aims to help readers better understand the importance and function of cobamides in reductive dehalogenation. The presented information can aid in the development of bioremediation strategies.
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Affiliation(s)
- Yongfeng Lu
- College of Light Industry and Food Engineering, Guangxi University, Nanning, China
| | - Fancheng Lu
- College of Light Industry and Food Engineering, Guangxi University, Nanning, China
| | - Jian Zhang
- College of Light Industry and Food Engineering, Guangxi University, Nanning, China
| | - Qianwei Tang
- College & Hospital of Stomatology, Guangxi Medical University, Nanning, China
| | - Dan Yang
- College of Light Industry and Food Engineering, Guangxi University, Nanning, China
- Guangxi Yuhuacheng Environmental Protection Technology Co., Nanning, China
| | - Yaqing Liu
- College of Light Industry and Food Engineering, Guangxi University, Nanning, China
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Zhang Z, Ali M, Tang Z, Sun Q, Wang Q, Liu X, Yin L, Yan S, Xu M, Coulon F, Song X. Unveiling complete natural reductive dechlorination mechanisms of chlorinated ethenes in groundwater: Insights from functional gene analysis. JOURNAL OF HAZARDOUS MATERIALS 2024; 469:134034. [PMID: 38521036 DOI: 10.1016/j.jhazmat.2024.134034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 02/22/2024] [Accepted: 03/12/2024] [Indexed: 03/25/2024]
Abstract
Monitored natural attenuation (MNA) of chlorinated ethenes (CEs) has proven to be a cost-effective and environment-friendly approach for groundwater remediation. In this study, the complete dechlorination of CEs with formation of ethene under natural conditions, were observed at two CE-contaminated sites, including a pesticide manufacturing facility (PMF) and a fluorochemical plant (FCP), particularly in the deeply weathered bedrock aquifer at the FCP site. Additionally, a higher abundance of CE-degrading bacteria was identified with heightened dechlorination activities at the PMF site, compared to the FCP site. The reductive dehalogenase genes and Dhc 16 S rRNA gene were prevalent at both sites, even in groundwater where no CE dechlorination was observed. vcrA and bvcA was responsible for the complete dechlorination at the PMF and FCP site, respectively, indicating the distinct contributions of functional microbial species at each site. The correlation analyses suggested that Sediminibacterium has the potential to achieve the complete dechlorination at the FCP site. Moreover, the profiles of CE-degrading bacteria suggested that dechlorination occurred under Fe3+/sulfate-reducing and nitrate-reducing conditions at the PMF and FCP site, respectively. Overall these findings provided multi-lines of evidence on the diverse mechanisms of CE-dechlorination under natural conditions, which can provide valuable guidance for MNA strategies implementation.
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Affiliation(s)
- Zhuanxia Zhang
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Mukhtiar Ali
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhiwen Tang
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Qi Sun
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Qing Wang
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Xin Liu
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Lipu Yin
- China State Science Dingshi Environmental Engineering CO., LTD, Beijing, China
| | - Song Yan
- China State Science Dingshi Environmental Engineering CO., LTD, Beijing, China
| | - Minmin Xu
- Shandong Academy of Environmental Sciences Co., LTD, Jinan 250013, China
| | - Frederic Coulon
- School of Water, Energy and Environment, Cranfield University, Cranfield MK43 0AL, UK
| | - Xin Song
- Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China.
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Asai M, Morita Y, Meng L, Miyazaki H, Yoshida N. Dehalococcoides mccartyi strain NIT01 grows more stably in vessels made of pure titanium rather than the stainless alloy SUS304. ENVIRONMENTAL MICROBIOLOGY REPORTS 2023; 15:557-567. [PMID: 37594161 PMCID: PMC10667658 DOI: 10.1111/1758-2229.13192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 07/28/2023] [Indexed: 08/19/2023]
Abstract
Advances in many isolation studies have revealed that pure Dehalococcoides grow stably, although the large-scale pure cultivation of Dehalococcoides has yet to be established. In this study, 7 L-culturing of Dehalococcoides mccartyi strain NIT01 was first performed using vessels made of glass and stainless alloy SUS304. All batches cultured in the glass vessel successfully dechlorinated >95% of 1 mM trichloroethene (TCE) to ethene (ETH), whereas only 5 out of 13 batches cultured in the SUS304 vessel did the same. The difference in dechlorination efficiency suggested the possible inhibition of dechlorination by SUS304. Also, the strain NIT01 showed long delays in dechlorination with pieces of SUS316, steel, and a repeatedly used SUS304, but not with titanium. The repeatedly used SUS304 cracked and increased the Fe2+ concentration to ≥76 μM. Dechlorination by this strain was also inhibited with ≥1000 μM Fe2+ and ≥23 μM Cr3+ but not with ≤100 μM Ni2+ , suggesting that Cr3+ eluted from solid stainless alloys inhibited the dechlorination. Culturing in a titanium vessel instead of a stainless alloy showed the complete dechlorination of 1 mM TCE within 12-28 days with a growth yield of 2.7 × 107 cells/μmol-released Cl- , even after repeating use of the vessels six times.
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Affiliation(s)
- Masaki Asai
- Department of Civil EngineeringNagoya Institute of TechnologyNagoyaJapan
| | - Yuki Morita
- Department of Civil EngineeringNagoya Institute of TechnologyNagoyaJapan
| | - Lingyu Meng
- Department of Civil EngineeringNagoya Institute of TechnologyNagoyaJapan
| | - Hidetoshi Miyazaki
- Department of Physical Science and EngineeringNagoya Institute of TechnologyNagoyaJapan
| | - Naoko Yoshida
- Department of Civil EngineeringNagoya Institute of TechnologyNagoyaJapan
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Kjellerup BV, Nijenhuis I, Rossetti S. Editorial: Thematic issue on anaerobic biological dehalogenation. FEMS Microbiol Ecol 2022; 98:6780077. [PMID: 36308759 DOI: 10.1093/femsec/fiac108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 07/13/2022] [Accepted: 09/09/2022] [Indexed: 01/21/2023] Open
Affiliation(s)
- Birthe Veno Kjellerup
- A. James Clark School of Engineering, University of Maryland at College Park, 1147 Glenn L. Martin Hall, College Park, MD 20742, United States
| | - Ivonne Nijenhuis
- Department of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research - UFZ, Permoserstrasse 15, 04318 Leipzig, Germany
| | - Simona Rossetti
- Water Research Institute (IRSA), National Research Council (CNR), via Salaria km 29300, 00015 Monterotondo (RM), Italy
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