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Brenman-Suttner D, Zayed A. An integrative genomic toolkit for studying the genetic, evolutionary, and molecular underpinnings of eusociality in insects. CURRENT OPINION IN INSECT SCIENCE 2024; 65:101231. [PMID: 38977215 DOI: 10.1016/j.cois.2024.101231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Revised: 06/26/2024] [Accepted: 07/02/2024] [Indexed: 07/10/2024]
Abstract
While genomic resources for social insects have vastly increased over the past two decades, we are still far from understanding the genetic and molecular basis of eusociality. Here, we briefly review three scientific advancements that, when integrated, can be highly synergistic for advancing our knowledge of the genetics and evolution of eusocial traits. Population genomics provides a natural way to quantify the strength of natural selection on coding and regulatory sequences, highlighting genes that have undergone adaptive evolution during the evolution or maintenance of eusociality. Genome-wide association studies (GWAS) can be used to characterize the complex genetic architecture underlying eusocial traits and identify candidate causal variants. Concurrently, CRISPR/Cas9 enables the precise manipulation of gene function to both validate genotype-phenotype associations and study the molecular biology underlying interesting traits. While each approach has its own advantages and disadvantages, which we discuss herein, we argue that their combination will ultimately help us better understand the genetics and evolution of eusocial behavior. Specifically, by triangulating across these three different approaches, researchers can directly identify and study loci that have a causal association with key phenotypes and have evidence of positive selection over the relevant timescales associated with the evolution and maintenance of eusociality in insects.
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Affiliation(s)
| | - Amro Zayed
- Department of Biology, York University, Toronto, Ontario, Canada.
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2
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Cavalcante JS, Riciopo PM, Pereira AFM, Jeronimo BC, Angstmam DG, Pôssas FC, de Andrade Filho A, Cerni FA, Pucca MB, Ferreira Junior RS. Clinical complications in envenoming by Apis honeybee stings: insights into mechanisms, diagnosis, and pharmacological interventions. Front Immunol 2024; 15:1437413. [PMID: 39359723 PMCID: PMC11445026 DOI: 10.3389/fimmu.2024.1437413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Accepted: 08/20/2024] [Indexed: 10/04/2024] Open
Abstract
Envenoming resulting from Apis honeybee stings pose a neglected public health concern, with clinical complications ranging from mild local reactions to severe systemic manifestations. This review explores the mechanisms underlying envenoming by honeybee sting, discusses diagnostic approaches, and reviews current pharmacological interventions. This section explores the diverse clinical presentations of honeybee envenoming, including allergic and non-allergic reactions, emphasizing the need for accurate diagnosis to guide appropriate medical management. Mechanistic insights into the honeybee venom's impact on physiological systems, including the immune and cardiovascular systems, are provided to enhance understanding of the complexities of honeybee sting envenoming. Additionally, the article evaluates emerging diagnostic technologies and therapeutic strategies, providing a critical analysis of their potential contributions to improved patient outcomes. This article aims to provide current knowledge for healthcare professionals to effectively manage honeybee sting envenoming, thereby improving patient care and treatment outcomes.
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Affiliation(s)
- Joeliton S Cavalcante
- Graduate Program in Tropical Diseases, Botucatu Medical School (FMB), São Paulo State University (UNESP), Botucatu, São Paulo, Brazil
| | - Pedro Marques Riciopo
- Department of Bioprocess and Biotechnology, School of Agriculture, Agronomic Sciences School, São Paulo State University (UNESP), Botucatu, São Paulo, Brazil
| | - Ana Flávia Marques Pereira
- Center for the Study of Venoms and Venomous Animals of UNESP (CEVAP), São Paulo State University (UNESP), Botucatu, São Paulo, Brazil
| | - Bruna Cristina Jeronimo
- Center for the Study of Venoms and Venomous Animals of UNESP (CEVAP), São Paulo State University (UNESP), Botucatu, São Paulo, Brazil
| | - Davi Gomes Angstmam
- Graduate Program in Tropical Diseases, Botucatu Medical School (FMB), São Paulo State University (UNESP), Botucatu, São Paulo, Brazil
| | - Felipe Carvalhaes Pôssas
- Minas Gerais Toxicological Information and Assistance Center, João XXIII Hospital, Belo Horizonte, Minas Gerais, Brazil
| | - Adebal de Andrade Filho
- Minas Gerais Toxicological Information and Assistance Center, João XXIII Hospital, Belo Horizonte, Minas Gerais, Brazil
| | - Felipe A Cerni
- Graduate Program in Tropical Medicine of the State University of Amazonas, Manaus, Amazonas, Brazil
| | - Manuela B Pucca
- Center for the Study of Venoms and Venomous Animals of UNESP (CEVAP), São Paulo State University (UNESP), Botucatu, São Paulo, Brazil
- Department of Clinical Analysis, School of Pharmaceutical Sciences, São Paulo State University (UNESP), Araraquara, São Paulo, Brazil
| | - Rui Seabra Ferreira Junior
- Graduate Program in Tropical Diseases, Botucatu Medical School (FMB), São Paulo State University (UNESP), Botucatu, São Paulo, Brazil
- Center for the Study of Venoms and Venomous Animals of UNESP (CEVAP), São Paulo State University (UNESP), Botucatu, São Paulo, Brazil
- Center for Translational Science and Development of Biopharmaceuticals FAPESP/CEVAP-UNESP, Botucatu, São Paulo, Brazil
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3
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Aguilar‐Aguilar MDJ, Lobo J, Cristóbal‐Pérez EJ, Balvino‐Olvera FJ, Ruiz‐Guzmán G, Quezada‐Euán JJG, Quesada M. Dominance of African racial ancestry in honey bee colonies of Mexico 30 years after the migration of hybrids from South America. Evol Appl 2024; 17:e13738. [PMID: 38919879 PMCID: PMC11196837 DOI: 10.1111/eva.13738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2024] [Revised: 05/08/2024] [Accepted: 05/27/2024] [Indexed: 06/27/2024] Open
Abstract
The Africanized honey bee, a hybrid of Apis mellifera scutellata from Africa with European subspecies, has been considered an invasive species and a problem for beekeeping. Africanized bees arrived in Mexico in 1986, 30 years after their accidental release in Brazil. Although government programs were implemented for its eradication, Africanized populations persist in Mexico, but precise information on the patterns of genetic introgression and racial ancestry is scarce. We determined maternal and parental racial ancestry of managed and feral honey bees across the five beekeeping regions of Mexico, using mitochondrial (mtDNA, COI-COII intergenic region) and nuclear markers (94 ancestrally informative SNPs), to assess the relationship between beekeeping management, beekeeping region, altitude, and latitude with the distribution of maternal and parental racial ancestry. Results revealed a predominantly African ancestry in the Mexican honey bees, but the proportion varied according to management, beekeeping regions, and latitude. The Mexican honey bees showed 31 haplotypes of four evolutionary lineages (A, M, C, and O). Managed honey bees had mitochondrial and nuclear higher proportions of European ancestry than feral honey bees, which had a higher proportion of African ancestry. Beekeeping regions of lower latitudes had higher proportions of African nuclear ancestry. Managed and feral honey bees showed differences in the proportion of maternal and nuclear racial ancestry. Managed honey bees from the Yucatan Peninsula and feral honey bees had a higher mtDNA than nuclear proportions of African ancestry. Managed honey bees, except those on the Yucatan Peninsula, had a higher nuclear than mtDNA proportion of African ancestry. Our study demonstrates that Africanized honey bee populations are genetically diverse and well established in Mexico, which highlights the limitations of management and government programs to contain the Africanization process and demands the incorporation of this lineage in any breeding program for sustainable beekeeping.
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Affiliation(s)
- María de Jesús Aguilar‐Aguilar
- Laboratorio Nacional de Análisis y Síntesis EcológicaEscuela Nacional de Estudios Superiores, Unidad MoreliaMoreliaMichoacánMexico
- Posgrado en Ciencias Biológicas, Unidad de Posgrado, Edificio D, 1° Piso, Circuito de PosgradosCiudad UniversitariaCoyoacánMexico
- Laboratorio Binacional UNAM‐UCRUniversidad Nacional Autónoma de MéxicoMoreliaMichoacánMexico
| | - Jorge Lobo
- Laboratorio Nacional de Análisis y Síntesis EcológicaEscuela Nacional de Estudios Superiores, Unidad MoreliaMoreliaMichoacánMexico
- Laboratorio Binacional UNAM‐UCRUniversidad Nacional Autónoma de MéxicoMoreliaMichoacánMexico
- Escuela de BiologíaUniversidad de Costa RicaSan PedroCosta Rica
| | - E. Jacob Cristóbal‐Pérez
- Laboratorio Nacional de Análisis y Síntesis EcológicaEscuela Nacional de Estudios Superiores, Unidad MoreliaMoreliaMichoacánMexico
- Laboratorio Binacional UNAM‐UCRUniversidad Nacional Autónoma de MéxicoMoreliaMichoacánMexico
| | - Francisco J. Balvino‐Olvera
- Laboratorio Nacional de Análisis y Síntesis EcológicaEscuela Nacional de Estudios Superiores, Unidad MoreliaMoreliaMichoacánMexico
- Laboratorio Binacional UNAM‐UCRUniversidad Nacional Autónoma de MéxicoMoreliaMichoacánMexico
| | - Gloria Ruiz‐Guzmán
- Laboratorio Nacional de Análisis y Síntesis EcológicaEscuela Nacional de Estudios Superiores, Unidad MoreliaMoreliaMichoacánMexico
- Laboratorio Binacional UNAM‐UCRUniversidad Nacional Autónoma de MéxicoMoreliaMichoacánMexico
| | - José Javier G. Quezada‐Euán
- Departamento de Apicultura Tropical, Campus de Ciencias Biológicas y AgropecuariasUniversidad Autónoma de YucatánMéridaMexico
| | - Mauricio Quesada
- Laboratorio Nacional de Análisis y Síntesis EcológicaEscuela Nacional de Estudios Superiores, Unidad MoreliaMoreliaMichoacánMexico
- Laboratorio Binacional UNAM‐UCRUniversidad Nacional Autónoma de MéxicoMoreliaMichoacánMexico
- Instituto de Investigaciones en Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma de MéxicoMoreliaMichoacánMexico
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Bianchi EM, Ferrari C, Aguirre NC, Filippi CV, Vera PA, Puebla AF, Gennari GP, Rodríguez GA, Scannapieco AC, Acuña CV, Lanzavecchia SB. Phenotypic and genetic characterization of Africanized Apis mellifera colonies with natural tolerance to Varroa destructor and contrasting defensive behavior. FRONTIERS IN INSECT SCIENCE 2023; 3:1175760. [PMID: 38469487 PMCID: PMC10926445 DOI: 10.3389/finsc.2023.1175760] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 07/27/2023] [Indexed: 03/13/2024]
Abstract
Africanized Apis mellifera colonies with promising characteristics for beekeeping have been detected in northern Argentina (subtropical climate) and are considered of interest for breeding programs. Integral evaluation of this feral material revealed high colony strength and resistance/tolerance to brood diseases. However, these Africanized honeybees (AHB) also showed variable negative behavioral traits for beekeeping, such as defensiveness, tendency to swarm and avoidance behavior. We developed a protocol for the selection of AHB stocks based on defensive behavior and characterized contrasting colonies for this trait using NGS technologies. For this purpose, population and behavioral parameters were surveyed throughout a beekeeping season in nine daughter colonies obtained from a mother colony (A1 mitochondrial haplotype) with valuable characteristics (tolerance to the mite Varroa destructor, high colony strength and low defensiveness). A Defensive Behavior Index was developed and tested in the colonies under study. Mother and two daughter colonies displaying contrasting defensive behavior were analyzed by ddRADseq. High-quality DNA samples were obtained from 16 workers of each colony. Six pooled samples, including two replicates of each of the three colonies, were processed. A total of 12,971 SNPs were detected against the reference genome of A. mellifera, 142 of which showed significant differences between colonies. We detected SNPs in coding regions, lncRNA, miRNA, rRNA, tRNA, among others. From the original data set, we also identified 647 SNPs located in protein-coding regions, 128 of which are related to 21 genes previously associated with defensive behavior, such as dop3 and dopR2, CaMKII and ADAR, obp9 and obp10, and members of the 5-HT family. We discuss the obtained results by considering the influence of polyandry and paternal lineages on the defensive behavior in AHB and provide baseline information to use this innovative molecular approach, ddRADseq, to assist in the selection and evaluation of honey bee stocks showing low defensive behavior for commercial uses.
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Affiliation(s)
- Eliana Mariel Bianchi
- Área Animal, Instituto de Investigación Animal del Chaco-Semiárido (IIACS) - Instituto Nacional de Tecnología Agropecuaria (INTA), Santa Rosa de Leales, Tucumán, Argentina
| | - Carolina Ferrari
- Escuela de Ciencias Agrarias, Naturales y Ambientales (ECANA), Universidad Nacional del Noroeste de Buenos Aires (UNNOBA), Pergamino, Buenos Aires, Argentina
| | - Natalia C. Aguirre
- Instituto de Agrobiotecnología y Biología Molecular (IABIMO), Instituto Nacional de Tecnología Agropecuaria (INTA) - Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Hurlingham, Buenos Aires, Argentina
| | - Carla V. Filippi
- Instituto de Agrobiotecnología y Biología Molecular (IABIMO), Instituto Nacional de Tecnología Agropecuaria (INTA) - Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Hurlingham, Buenos Aires, Argentina
- Laboratorio de Bioquímica, Departamento de Biología Vegetal, Facultad de Agronomía, Universidad de la República, Montevideo, Uruguay
| | - Pablo A. Vera
- Unidad de Genómica, Instituto de Biotecnología-Instituto de Agrobiotecnología y Biología Molecular (IABIMO), Centro de Investigación en Ciencias Veterinarias y Agronómicas (CICVyA), Instituto Nacional de Tecnología Agropecuaria (INTA)-Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Hurlingham, Buenos Aires, Argentina
| | - Andrea Fabiana Puebla
- Unidad de Genómica, Instituto de Biotecnología-Instituto de Agrobiotecnología y Biología Molecular (IABIMO), Centro de Investigación en Ciencias Veterinarias y Agronómicas (CICVyA), Instituto Nacional de Tecnología Agropecuaria (INTA)-Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Hurlingham, Buenos Aires, Argentina
| | - Gerardo P. Gennari
- Estación Experimental Agropecuaria (EEA) Famaillá, Instituto Nacional de Tecnología Agropecuaria (INTA), Famaillá, Tucumán, Argentina
| | - Graciela A. Rodríguez
- Estación Experimental Agropecuaria (EEA) Ascasubi, Instituto Nacional de Tecnología Agropecuaria (INTA), Hilario Ascasubi, Buenos Aires, Argentina
| | - Alejandra Carla Scannapieco
- Instituto de Genética, Instituto Nacional de Tecnología Agropecuaria (INTA), Instituto de Agrobiotecnología y Biología Molecular (IABIMO) Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Hurlingham, Buenos Aires, Argentina
| | - Cintia V. Acuña
- Instituto de Agrobiotecnología y Biología Molecular (IABIMO), Instituto Nacional de Tecnología Agropecuaria (INTA) - Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Hurlingham, Buenos Aires, Argentina
| | - Silvia B. Lanzavecchia
- Instituto de Genética, Instituto Nacional de Tecnología Agropecuaria (INTA), Instituto de Agrobiotecnología y Biología Molecular (IABIMO) Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Hurlingham, Buenos Aires, Argentina
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Zárate D, Lima TG, Poole JD, Calfee E, Burton RS, Kohn JR. Admixture in Africanized honey bees ( Apis mellifera) from Panamá to San Diego, California (U.S.A.). Ecol Evol 2022; 12:e8580. [PMID: 35222958 PMCID: PMC8844128 DOI: 10.1002/ece3.8580] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2021] [Accepted: 12/01/2021] [Indexed: 01/05/2023] Open
Abstract
The Africanized honey bee (AHB) is a New World amalgamation of several subspecies of the western honey bee (Apis mellifera), a diverse taxon historically grouped into four major biogeographic lineages: A (African), M (Western European), C (Eastern European), and O (Middle Eastern). In 1956, accidental release of experimentally bred "Africanized" hybrids from a research apiary in Sao Paulo, Brazil initiated a hybrid species expansion that now extends from northern Argentina to northern California (U.S.A.). Here, we assess nuclear admixture and mitochondrial ancestry in 60 bees from four countries (Panamá; Costa Rica, Mexico; U.S.A) across this expansive range to assess ancestry of AHB several decades following initial introduction and test the prediction that African ancestry decreases with increasing latitude. We find that AHB nuclear genomes from Central America and Mexico have predominately African genomes (76%-89%) with smaller contributions from Western and Eastern European lineages. Similarly, nearly all honey bees from Central America and Mexico possess mitochondrial ancestry from the African lineage with few individuals having European mitochondria. In contrast, AHB from San Diego (CA) shows markedly lower African ancestry (38%) with substantial genomic contributions from all four major honey bee lineages and mitochondrial ancestry from all four clades as well. Genetic diversity measures from all New World populations equal or exceed those of ancestral populations. Interestingly, the feral honey bee population of San Diego emerges as a reservoir of diverse admixture and high genetic diversity, making it a potentially rich source of genetic material for honey bee breeding.
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Affiliation(s)
- Daniela Zárate
- Section of Ecology, Behavior, and EvolutionDivision of Biological SciencesUniversity of California, San DiegoLa JollaCaliforniaUSA
| | - Thiago G. Lima
- Scripps Institute of OceanographyUniversity of California, San DiegoLa JollaCaliforniaUSA
| | - Jude D. Poole
- Division of Biological SciencesUniversity of California, San DiegoLa JollaCaliforniaUSA
| | - Erin Calfee
- Department of Evolution and Ecology and Center for Population BiologyUniversity of California, DavisDavisCaliforniaUSA
| | - Ronald S. Burton
- Scripps Institute of OceanographyUniversity of California, San DiegoLa JollaCaliforniaUSA
| | - Joshua R. Kohn
- Section of Ecology, Behavior, and EvolutionDivision of Biological SciencesUniversity of California, San DiegoLa JollaCaliforniaUSA
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Dogantzis KA, Tiwari T, Conflitti IM, Dey A, Patch HM, Muli EM, Garnery L, Whitfield CW, Stolle E, Alqarni AS, Allsopp MH, Zayed A. Thrice out of Asia and the adaptive radiation of the western honey bee. SCIENCE ADVANCES 2021; 7:eabj2151. [PMID: 34860547 PMCID: PMC8641936 DOI: 10.1126/sciadv.abj2151] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
The origin of the western honey bee Apis mellifera has been intensely debated. Addressing this knowledge gap is essential for understanding the evolution and genetics of one of the world’s most important pollinators. By analyzing 251 genomes from 18 native subspecies, we found support for an Asian origin of honey bees with at least three expansions leading to African and European lineages. The adaptive radiation of honey bees involved selection on a few genomic “hotspots.” We found 145 genes with independent signatures of selection across all bee lineages, and these genes were highly associated with worker traits. Our results indicate that a core set of genes associated with worker and colony traits facilitated the adaptive radiation of honey bees across their vast distribution.
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Affiliation(s)
- Kathleen A. Dogantzis
- Department of Biology, York University, 4700 Keele Street, Toronto, M3J 1P3 Ontario, Canada
| | - Tanushree Tiwari
- Department of Biology, York University, 4700 Keele Street, Toronto, M3J 1P3 Ontario, Canada
| | - Ida M. Conflitti
- Department of Biology, York University, 4700 Keele Street, Toronto, M3J 1P3 Ontario, Canada
| | - Alivia Dey
- Department of Biology, York University, 4700 Keele Street, Toronto, M3J 1P3 Ontario, Canada
| | - Harland M. Patch
- Department of Entomology, The Pennsylvania State University, State College, PA, USA
| | - Elliud M. Muli
- Department of Life Science, South Eastern Kenya University (SEKU), P.O. Box 170-90200, Kitui, Kenya
| | - Lionel Garnery
- Laboratoire Evolution Génome Comportement Ecologie (EGCE) UMR 9191, Gif sur-Yvette, France
| | - Charles W. Whitfield
- Department of Entomology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Eckart Stolle
- LIB–Leibniz Institute for the Analysis of Biodiversity Change Museum Koenig, Center of Molecular Biodiversity Research Adenauerallee 160, 53113 Bonn, Germany
| | - Abdulaziz S. Alqarni
- Department of Plant Protection, College of Food and Agriculture Sciences, King Saud University, Riyadh, Saudi Arabia
| | - Michael H. Allsopp
- Plant Protection Research Institute, Agricultural Research Council, Stellenbosch, South Africa
| | - Amro Zayed
- Department of Biology, York University, 4700 Keele Street, Toronto, M3J 1P3 Ontario, Canada
- Corresponding author.
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7
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Bee stings in Brazil: Epidemiological aspects in humans. Toxicon 2021; 201:59-65. [PMID: 34419508 DOI: 10.1016/j.toxicon.2021.08.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Revised: 08/14/2021] [Accepted: 08/16/2021] [Indexed: 11/20/2022]
Abstract
Bees are insects of the order Hymenoptera and are involved in human accidents. In Brazil, bees that cause accidents are crosses derived from Europeans with African bees and are known for their aggressive behavior. Despite being considered an important public health concern, epidemiological studies at the national level are scarce. The objective of this study was to verify the epidemiological profile of bee accidents in humans in Brazil, using data from 2009 to 2019 of the Brazilian Ministry of Health. It was found that bee accidents increased by 207.61% from the first to the last year of the present study. The incidence varied according to the geographical region; the southern region had more bee accidents, but the Northern region had more deaths caused by bee accidents. Besides, climatic conditions were associated with susceptibility to bee stings; the incidence was higher during spring and summer. Age was also associated with fatality rate, with the elderly being the group with the highest fatality rate. Our results demonstrate that accidents caused by bees involve factors related to patients, the environment, and the behavior of bees. It is important to know the epidemiological aspects to help prevent apidic accidents.
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Guzman-Novoa E, Morfin N, De la Mora A, Macías-Macías JO, Tapia-González JM, Contreras-Escareño F, Medina-Flores CA, Correa-Benítez A, Quezada-Euán JJG. The Process and Outcome of the Africanization of Honey Bees in Mexico: Lessons and Future Directions. Front Ecol Evol 2020. [DOI: 10.3389/fevo.2020.608091] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023] Open
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Calfee E, Agra MN, Palacio MA, Ramírez SR, Coop G. Selection and hybridization shaped the rapid spread of African honey bee ancestry in the Americas. PLoS Genet 2020; 16:e1009038. [PMID: 33075065 PMCID: PMC7595643 DOI: 10.1371/journal.pgen.1009038] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Revised: 10/29/2020] [Accepted: 08/09/2020] [Indexed: 02/07/2023] Open
Abstract
Recent biological invasions offer 'natural' laboratories to understand the genetics and ecology of adaptation, hybridization, and range limits. One of the most impressive and well-documented biological invasions of the 20th century began in 1957 when Apis mellifera scutellata honey bees swarmed out of managed experimental colonies in Brazil. This newly-imported subspecies, native to southern and eastern Africa, both hybridized with and out-competed previously-introduced European honey bee subspecies. Populations of scutellata-European hybrid honey bees rapidly expanded and spread across much of the Americas in less than 50 years. We use broad geographic sampling and whole genome sequencing of over 300 bees to map the distribution of scutellata ancestry where the northern and southern invasions have presently stalled, forming replicated hybrid zones with European bee populations in California and Argentina. California is much farther from Brazil, yet these hybrid zones occur at very similar latitudes, consistent with the invasion having reached a climate barrier. At these range limits, we observe genome-wide clines for scutellata ancestry, and parallel clines for wing length that span hundreds of kilometers, supporting a smooth transition from climates favoring scutellata-European hybrid bees to climates where they cannot survive winter. We find no large effect loci maintaining exceptionally steep ancestry transitions. Instead, we find most individual loci have concordant ancestry clines across South America, with a build-up of somewhat steeper clines in regions of the genome with low recombination rates, consistent with many loci of small effect contributing to climate-associated fitness trade-offs. Additionally, we find no substantial reductions in genetic diversity associated with rapid expansions nor complete dropout of scutellata ancestry at any individual loci on either continent, which suggests that the competitive fitness advantage of scutellata ancestry at lower latitudes has a polygenic basis and that scutellata-European hybrid bees maintained large population sizes during their invasion. To test for parallel selection across continents, we develop a null model that accounts for drift in ancestry frequencies during the rapid expansion. We identify several peaks within a larger genomic region where selection has pushed scutellata ancestry to high frequency hundreds of kilometers past the present cline centers in both North and South America and that may underlie high-fitness traits driving the invasion.
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Affiliation(s)
- Erin Calfee
- Center for Population Biology, University of California, Davis, California, United States of America
- Department of Evolution and Ecology, University of California, Davis, California, United States of America
| | | | - María Alejandra Palacio
- Instituto Nacional de Tecnología Agropecuaria (INTA), Balcarce, Argentina
- Facultad de Ciencias Agrarias, Universidad de Mar del Plata, Balcarce, Argentina
| | - Santiago R. Ramírez
- Center for Population Biology, University of California, Davis, California, United States of America
- Department of Evolution and Ecology, University of California, Davis, California, United States of America
| | - Graham Coop
- Center for Population Biology, University of California, Davis, California, United States of America
- Department of Evolution and Ecology, University of California, Davis, California, United States of America
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