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For: Heckenhauer J, Frandsen PB, Gupta DK, Paule J, Prost S, Schell T, Schneider JV, Stewart RJ, Pauls SU. Annotated Draft Genomes of Two Caddisfly Species Plectrocnemia conspersa CURTIS and Hydropsyche tenuis NAVAS (Insecta: Trichoptera). Genome Biol Evol 2019;11:3445-3451. [PMID: 31774498 PMCID: PMC6916706 DOI: 10.1093/gbe/evz264] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/25/2019] [Indexed: 02/06/2023]  Open
Number Cited by Other Article(s)
1
Deng X, Frandsen PB, Dikow RB, Favre A, Shah DN, Shah RDT, Schneider JV, Heckenhauer J, Pauls SU. The impact of sequencing depth and relatedness of the reference genome in population genomic studies: A case study with two caddisfly species (Trichoptera, Rhyacophilidae, Himalopsyche). Ecol Evol 2022;12:e9583. [PMID: 36523526 PMCID: PMC9745013 DOI: 10.1002/ece3.9583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 11/10/2022] [Accepted: 11/16/2022] [Indexed: 12/15/2022]  Open
2
Stewart RJ, Frandsen PB, Pauls SU, Heckenhauer J. Conservation of Three-Dimensional Structure of Lepidoptera and Trichoptera L-Fibroins for 290 Million Years. Molecules 2022;27:molecules27185945. [PMID: 36144689 PMCID: PMC9504780 DOI: 10.3390/molecules27185945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Revised: 09/04/2022] [Accepted: 09/09/2022] [Indexed: 11/23/2022]  Open
3
Rouhová L, Sehadová H, Pauchová L, Hradilová M, Žurovcová M, Šerý M, Rindoš M, Žurovec M. Using the multi-omics approach to reveal the silk composition in Plectrocnemia conspersa. Front Mol Biosci 2022;9:945239. [PMID: 36060257 PMCID: PMC9432349 DOI: 10.3389/fmolb.2022.945239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Accepted: 07/19/2022] [Indexed: 11/29/2022]  Open
4
Kawahara AY, Storer CG, Markee A, Heckenhauer J, Powell A, Plotkin D, Hotaling S, Cleland TP, Dikow RB, Dikow T, Kuranishi RB, Messcher R, Pauls SU, Stewart RJ, Tojo K, Frandsen PB. Long-read HiFi sequencing correctly assembles repetitive heavy fibroin silk genes in new moth and caddisfly genomes. GIGABYTE 2022;2022:gigabyte64. [PMID: 36824508 PMCID: PMC9693786 DOI: 10.46471/gigabyte.64] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Accepted: 06/24/2022] [Indexed: 11/09/2022]  Open
5
Angelova N, Danis T, Lagnel J, Tsigenopoulos CS, Manousaki T. SnakeCube: containerized and automated pipeline for de novo genome assembly in HPC environments. BMC Res Notes 2022;15:98. [PMID: 35255960 PMCID: PMC8900408 DOI: 10.1186/s13104-022-05978-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Accepted: 02/17/2022] [Indexed: 11/10/2022]  Open
6
Heckenhauer J, Frandsen PB, Sproul JS, Li Z, Paule J, Larracuente AM, Maughan PJ, Barker MS, Schneider JV, Stewart RJ, Pauls SU. Genome size evolution in the diverse insect order Trichoptera. Gigascience 2022;11:6537159. [PMID: 35217860 PMCID: PMC8881205 DOI: 10.1093/gigascience/giac011] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2021] [Revised: 11/25/2021] [Accepted: 01/21/2022] [Indexed: 12/30/2022]  Open
7
Ríos-Touma B, Holzenthal RW, Rázuri-Gonzales E, Heckenhauer J, Pauls SU, Storer CG, Frandsen PB. De Novo Genome Assembly and Annotation of an Andean Caddisfly, Atopsyche davidsoni Sykora, 1991, a Model for Genome Research of High-Elevation Adaptations. Genome Biol Evol 2022;14:evab286. [PMID: 34962985 PMCID: PMC8767365 DOI: 10.1093/gbe/evab286] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/20/2021] [Indexed: 11/13/2022]  Open
8
Pfenninger M, Schönnenbeck P, Schell T. ModEst: Accurate estimation of genome size from next generation sequencing data. Mol Ecol Resour 2021;22:1454-1464. [PMID: 34882987 DOI: 10.1111/1755-0998.13570] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Revised: 11/29/2021] [Accepted: 11/30/2021] [Indexed: 01/11/2023]
9
Li X, Ellis E, Plotkin D, Imada Y, Yago M, Heckenhauer J, Cleland TP, Dikow RB, Dikow T, Storer CG, Kawahara AY, Frandsen PB. First Annotated Genome of a Mandibulate Moth, Neomicropteryx cornuta, Generated Using PacBio HiFi Sequencing. Genome Biol Evol 2021;13:6380144. [PMID: 34599325 PMCID: PMC8557830 DOI: 10.1093/gbe/evab229] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/27/2021] [Indexed: 11/14/2022]  Open
10
Harper JR, Sripada N, Kher P, Whittall JB, Edgerly JS. Interpreting nature's finest insect silks (Order Embioptera): hydropathy, interrupted repetitive motifs, and fiber-to-film transformation for two neotropical species. ZOOLOGY 2021;146:125923. [PMID: 33901836 DOI: 10.1016/j.zool.2021.125923] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Revised: 03/14/2021] [Accepted: 03/19/2021] [Indexed: 10/21/2022]
11
Genome Size Estimation of Callipogon relictus Semenov (Coleoptera: Cerambycidae), an Endangered Species and a Korea Natural Monument. INSECTS 2021;12:insects12020111. [PMID: 33513896 PMCID: PMC7910860 DOI: 10.3390/insects12020111] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/27/2020] [Revised: 01/21/2021] [Accepted: 01/25/2021] [Indexed: 11/24/2022]
12
Olsen LK, Heckenhauer J, Sproul JS, Dikow RB, Gonzalez VL, Kweskin MP, Taylor AM, Wilson SB, Stewart RJ, Zhou X, Holzenthal R, Pauls SU, Frandsen PB. Draft Genome Assemblies and Annotations of Agrypnia vestita Walker, and Hesperophylax magnus Banks Reveal Substantial Repetitive Element Expansion in Tube Case-Making Caddisflies (Insecta: Trichoptera). Genome Biol Evol 2021;13:6121109. [PMID: 33501983 PMCID: PMC7936034 DOI: 10.1093/gbe/evab013] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/16/2021] [Indexed: 12/20/2022]  Open
13
Hotaling S, Kelley JL, Frandsen PB. Aquatic Insects Are Dramatically Underrepresented in Genomic Research. INSECTS 2020;11:E601. [PMID: 32899516 PMCID: PMC7563230 DOI: 10.3390/insects11090601] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/20/2020] [Revised: 09/01/2020] [Accepted: 09/03/2020] [Indexed: 02/06/2023]
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