Supersuppressible mutants in Neurospora: mutants at the tryp-1 and tryp-2 loci affecting the structure of the multienzyme complex in the tryptophan pathway

Isolation and characterization of mammalian cell lines carrying suppressible mutations

To obtain animal cell lines carrying nonsense mutations and the corresponding suppressors, we used a "supersuppressor" selection strategy on the CHO cell line. The wild-type strain is resistant to the aminopterin present in HAT medium (i.e., it is HATr) because it contains the enzymes hypoxanthine-guanine phosphoribosyl transferase (HPRT) and thymidine kinase (TK), whereas both HPRT- mutants - selected by their resistance to 6-thioguanine (TGr) - and TK- mutants - selected by their resistance to 5-bromodeoxyuridine (BrdUrdr) - are HATs. Therefore, from HPRT- TK- double nonsense mutants, whose phenotype would be TGr BrdUrdr (HATs), simultaneous HPRT+ TK+ double phenotypic revertants could be obtained by selecting HATr (TGs BrdUrds) variants carrying the corresponding nonsense supersuppressors. Through ethylmethane sulfonate (EMS) mutagenesis of the CHO cell line we obtained 65 TGr variants, 53 of which were HATs and the rest HATr. Among 36 TGr (HATs) variants tested, 23 did not revert to HATr, 4 reverted spontaneously and with EMS, and 9 reverted only with EMS. Some of the latter were probably HPRT- nonsense mutants because they were very stringent (had less than 2% of wild-type [3H]hypoxanthine incorporation and HPRT enzyme activity), and did not complement genetically. The introduction of a second marker (BrdUrdr) in 7 of these strains allowed us to isolate 29 TGr BrdUrdr (HATs) double drug-resistant lines. Through one-step mutagenesis and selection in HAT medium, from two double resistant strains we could isolate HATr (TGs BrdUrds) wild-type phenotypic revertants, each of which probably carries suppressible HPRT and TK nonsense (or missense) alleles and the corresponding supersuppressor. Our strategy could now be extended to obtain variants carrying suppressors in other cell lines.

Repair-resistant mutation in Neurospora

Chronic UV treatment produces severalfold fewer mutations in Neurospora conidia than does the same total dose of acute UV. Experiments were designed to determine the conditions required for chronic UV mutagenesis. Measurement of the coincidence frequency for two independent mutations revealed the existence of a subset of cells which are mutable by chronic UV. Analysis of forward mutation at the mtr locus showed that the genetic alterations produced by chronic UV were virtually all point mutants, even though the assay system could detect alterations or deletions extending into neighboring genes. A significant fraction of the mutants produced by acute UV were multigenic deletions. The size of the dose-rate effect (acute UV mutation frequency divided by chronic UV mutation frequency) was compared for several different mutation assay systems. Forward mutations (recessive lethals and mtr) gave values ranging from four to nine. For events which were restricted to specific molecular sites (specific reversions and nonsense suppressor mutations), there was a wider range of dose-rate ratios. This suggests that chronic UV mutation may be restricted to certain molecular sequences or configurations.

The anthranilate synthetase enzyme complex and the trifunctional trpC gene of Aspergillus

In all fungi, anthranilate synthetase (AS) depends on two unlinked genes, one coding for a protein which has ammonia-dependent AS activity in vitro, the other providing glutamine-amido transferase (GAT) activity. In Aspergillus nidulans these proteins are part of a 10 S enzyme complex; the former is the trpA gene product and can be isolated as 4.5 S subunits, while the latter is one of three enzyme activities of the 7.5 S subunits coded for by the trpC gene or gene region. To investigate whether trpC represents a multi-functional gene or an operon-like gene cluster various trpC mutants were mapped by meiotic recombination, checked for complementation in diploids, assayed for residual enzyme activities and the size of their active proteins was estimated by sucrose gradient centrifugation. Three of the five types found each lacked one enzyme activity, produced 10 S complexes and complemented each other; mutants of the same type mapped in the same gene segment and presumably were missense mutations. The most extreme type lacked all three activities but several cases showed partial complementation, indicative of a one-gene trifunctional-polypeptide situation. However, the most interesting type retained GAT-function alone and produced AS-activity in 6-7 S complexes. These are proposed to contain trpC polypeptide fragments which fold normally in the GAT-domain and by combining with trpA+polypeptides form complexes of reduced but almost constant size due to protease activities, as demonstrated for the homologous proteins in Neurospora by Hulett and DeMoss (J. Biol. Chem. 250: 6648, 1975).

Amino acid replacements resulting from suppression and missense reversion of a chain-terminator mutation in Neurospora

The Neurospora crassa super-suppressor mutation, ssu-1, suppresses the auxotrophic phenotype of the mutant am(17) by inserting tyrosine at residue 313 of NADP-specific glutamate dehydrogenase, a position occupied in the wild type by glutamate. Two classes of am(17) revertants due to further mutation within the am gene have, respectively, tyrosine and leucine at residue 313. These replacements are consistent with a chain-terminating codon in am(17) of either the amber (UAG) or the ochre type (UAA), but are inconsistent with UGA. The Leu313 and Tyr313 variants of the enzyme have effective activity but are grossly different from the wild type in Michaelis constants (especially for ammonium) and heat stabilities at two different pH values. They show smaller but significant differences in these respects from each other.

Super suppressor action spectrum in Neurospora

The action of super suppressors mapping at eight separate loci upon ten different nonsense mutants is examined. These suppressors can be subdivided into seven classes based upon their capacity to restore function to the test mutants.

Evidence for nuclear restriction of supersuppressor gene products in Neurospora heterokaryons

It was demonstrated that the gene products of the three ssu loci cannot enter the transcription/translation system coded by the other component nucleus in a heterokaryon. In such a situation, dominance or recessiveness cannot be established, and simple dominance tests are meaningless.

The suppression of AD-3B mutants by supersuppressors in Neurospora crassa

The action of eight suppersuppressors has been tested on 76 ad-3B mutants which were induced by base-pair transition mutagens. Thirteen mutants were found to be suppressible by at least one ssu gene. Most of the suppressible mutants were found to belong to a class in which one would expect to find nonsense mutants (polar complementing or noncomplementing classes, with AT at the mutant site). However, suppression was observed in other classes, including those containing presumed missense mutants. The specificity of the suppressors and the criteria for molecular classification of the mutants are discussed.

Super suppressors in Neurospora crassa I. Induction, genetic localization and relationship to a missense suppressor

Genetic analyses have been made to test the feasibility of using coincident reversions to prototrophy of multiple mutants to select super suppressors (ssu) in Neurospora crassa. Of five double-mutant strains examined, only those mutant combinations in which both members had the properties of nonsense mutations did revert coincidently. Forty-eight genetically purified coincident revertants were crossed to the wild type, and each was shown to contain a suppressor mutation. Five super suppressors were examined more thoroughly. Tetrad and random spore analysis was used to demonstrate that each behaved as a single gene in crosses. Two super suppressors, ssu-1 and ssu-4 were localized respectively on the right and left arm of linkage group 7. Two others, ssu-2 and ssu-3, appear to map on the right arm of linkage group 1. The fifth super suppressor mapped, ssu-7, lies between ad-8 and ylo-1 on linkage group 6. One super suppressor, ssu-1, was interesting because it mapped near the location reported for the suppressor of the missense mutant tryp-3(td201) (Yourno and Suskind 1964a). However, no overlap was found in action spectrum of the two suppressors. Tetrad analysis showed the two suppressors were located about 10 map units apart, the missense suppressor being the more distal to the centromere.