Reference Citation Analysis: Find an Article, Find a Category, Find a Journal, Find a Scholar

For: Bolleman J, de Castro E, Baratin D, Gehant S, Cuche BA, Auchincloss AH, Coudert E, Hulo C, Masson P, Pedruzzi I, Rivoire C, Xenarios I, Redaschi N, Bridge A. HAMAP as SPARQL rules-A portable annotation pipeline for genomes and proteomes. Gigascience 2021;9:5731417. [PMID: 32034905 PMCID: PMC7007698 DOI: 10.1093/gigascience/giaa003] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Revised: 11/30/2019] [Accepted: 01/13/2020] [Indexed: 12/24/2022] Open

For:	Bolleman J, de Castro E, Baratin D, Gehant S, Cuche BA, Auchincloss AH, Coudert E, Hulo C, Masson P, Pedruzzi I, Rivoire C, Xenarios I, Redaschi N, Bridge A. HAMAP as SPARQL rules-A portable annotation pipeline for genomes and proteomes. Gigascience 2021;9:5731417. [PMID: 32034905 PMCID: PMC7007698 DOI: 10.1093/gigascience/giaa003] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Revised: 11/30/2019] [Accepted: 01/13/2020] [Indexed: 12/24/2022] Open

Number

Cited by Other Article(s)

Ang'ang'o LM, Herren JK, Tastan Bishop Ö. Bioinformatics analysis of the Microsporidia sp. MB genome: a malaria transmission-blocking symbiont of the Anopheles arabiensis mosquito. BMC Genomics 2024;25:1132. [PMID: 39578727 PMCID: PMC11585130 DOI: 10.1186/s12864-024-11046-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2024] [Accepted: 11/13/2024] [Indexed: 11/24/2024] Open

Altenhoff A, Bairoch A, Bansal P, Baratin D, Bastian F, Bolleman* J, Bridge A, Burdet F, Crameri K, Dauvillier J, Dessimoz C, Gehant S, Glover N, Gnodtke K, Hayes C, Ibberson M, Kriventseva E, Kuznetsov D, Frédérique L, Mehl F, Mendes de Farias* T, Michel PA, Moretti S, Morgat A, Österle S, Pagni M, Redaschi N, Robinson-Rechavi M, Samarasinghe K, Sima AC, Szklarczyk D, Topalov O, Touré V, Unni D, von Mering C, Wollbrett J, Zahn-Zabal* M, Zdobnov E. The SIB Swiss Institute of Bioinformatics Semantic Web of data. Nucleic Acids Res 2024;52:D44-D51. [PMID: 37878411 PMCID: PMC10767860 DOI: 10.1093/nar/gkad902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Revised: 10/02/2023] [Accepted: 10/05/2023] [Indexed: 10/27/2023] Open

Turki H, Jemielniak D, Hadj Taieb MA, Labra Gayo JE, Ben Aouicha M, Banat M, Shafee T, Prud’hommeaux E, Lubiana T, Das D, Mietchen D. Using logical constraints to validate statistical information about disease outbreaks in collaborative knowledge graphs: the case of COVID-19 epidemiology in Wikidata. PeerJ Comput Sci 2022;8:e1085. [PMID: 36262159 PMCID: PMC9575845 DOI: 10.7717/peerj-cs.1085] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Accepted: 08/15/2022] [Indexed: 06/16/2023]

Masłowska-Górnicz A, van den Bosch MRM, Saccenti E, Suarez-Diez M. A large-scale analysis of codon usage bias in 4868 bacterial genomes shows association of codon adaptation index with GC content, protein functional domains and bacterial phenotypes. BIOCHIMICA ET BIOPHYSICA ACTA. GENE REGULATORY MECHANISMS 2022;1865:194826. [PMID: 35605953 DOI: 10.1016/j.bbagrm.2022.194826] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Revised: 05/05/2022] [Accepted: 05/12/2022] [Indexed: 06/15/2023]

Bolleman J, de Castro E, Baratin D, Gehant S, Cuche BA, Auchincloss AH, Coudert E, Hulo C, Masson P, Pedruzzi I, Rivoire C, Xenarios I, Redaschi N, Bridge A. HAMAP as SPARQL rules-A portable annotation pipeline for genomes and proteomes. Gigascience 2021;9:5731417. [PMID: 32034905 PMCID: PMC7007698 DOI: 10.1093/gigascience/giaa003] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Revised: 11/30/2019] [Accepted: 01/13/2020] [Indexed: 12/24/2022] Open

Affiliation(s)

Jerven Bolleman Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland
Edouard de Castro Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland
Delphine Baratin Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland
Sebastien Gehant Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland
Beatrice A Cuche Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland
Andrea H Auchincloss Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland
Elisabeth Coudert Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland
Chantal Hulo Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland
Patrick Masson Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland
Ivo Pedruzzi Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland
Catherine Rivoire Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland
Ioannis Xenarios Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.,Centre Hospitalier Universitaire Vaudois/Ludwig Institute for Cancer Research, Agora Centre, CH-1005 Lausanne, Switzerland
Nicole Redaschi Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland
Alan Bridge Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland

Collapse

Feuermann M, Boutet E, Morgat A, Axelsen KB, Bansal P, Bolleman J, de Castro E, Coudert E, Gasteiger E, Géhant S, Lieberherr D, Lombardot T, Neto TB, Pedruzzi I, Poux S, Pozzato M, Redaschi N, Bridge A. Diverse Taxonomies for Diverse Chemistries: Enhanced Representation of Natural Product Metabolism in UniProtKB. Metabolites 2021;11:48. [PMID: 33445429 PMCID: PMC7827101 DOI: 10.3390/metabo11010048] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2020] [Revised: 01/05/2021] [Accepted: 01/07/2021] [Indexed: 01/28/2023] Open

Affiliation(s)

Marc Feuermann Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Emmanuel Boutet Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Anne Morgat Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Kristian B. Axelsen Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Parit Bansal Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Jerven Bolleman Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Edouard de Castro Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Elisabeth Coudert Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Elisabeth Gasteiger Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Sébastien Géhant Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Damien Lieberherr Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Thierry Lombardot Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Teresa B. Neto Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Ivo Pedruzzi Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Sylvain Poux Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Monica Pozzato Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Nicole Redaschi Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
Alan Bridge Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.)
on behalf of the UniProt Consortium Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, CMU, 1 Michel-Servet, CH-1211 Geneva 4, Switzerland; (A.M.); (K.B.A.); (P.B.); (J.B.); (E.d.C.); (E.C.); (E.G.); (S.G.); (D.L.); (T.L.); (T.B.N.); (I.P.); (S.P.); (M.P.); (N.R.); (A.B.) European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK Protein Information Resource, University of Delaware, 15 Innovation Way, Suite 205, Newark, DE 19711, USA Protein Information Resource, Georgetown University Medical Center, 3300 Whitehaven Street NorthWest, Suite 1200, Washington, DC 20007, USA

Collapse