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Fuxjager MJ, Ryder TB, Moody NM, Alfonso C, Balakrishnan CN, Barske J, Bosholn M, Boyle WA, Braun EL, Chiver I, Dakin R, Day LB, Driver R, Fusani L, Horton BM, Kimball RT, Lipshutz S, Mello CV, Miller ET, Webster MS, Wirthlin M, Wollman R, Moore IT, Schlinger BA. Systems biology as a framework to understand the physiological and endocrine bases of behavior and its evolution-From concepts to a case study in birds. Horm Behav 2023; 151:105340. [PMID: 36933440 DOI: 10.1016/j.yhbeh.2023.105340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Revised: 02/10/2023] [Accepted: 02/21/2023] [Indexed: 03/18/2023]
Abstract
Organismal behavior, with its tremendous complexity and diversity, is generated by numerous physiological systems acting in coordination. Understanding how these systems evolve to support differences in behavior within and among species is a longstanding goal in biology that has captured the imagination of researchers who work on a multitude of taxa, including humans. Of particular importance are the physiological determinants of behavioral evolution, which are sometimes overlooked because we lack a robust conceptual framework to study mechanisms underlying adaptation and diversification of behavior. Here, we discuss a framework for such an analysis that applies a "systems view" to our understanding of behavioral control. This approach involves linking separate models that consider behavior and physiology as their own networks into a singular vertically integrated behavioral control system. In doing so, hormones commonly stand out as the links, or edges, among nodes within this system. To ground our discussion, we focus on studies of manakins (Pipridae), a family of Neotropical birds. These species have numerous physiological and endocrine specializations that support their elaborate reproductive displays. As a result, manakins provide a useful example to help imagine and visualize the way systems concepts can inform our appreciation of behavioral evolution. In particular, manakins help clarify how connectedness among physiological systems-which is maintained through endocrine signaling-potentiate and/or constrain the evolution of complex behavior to yield behavioral differences across taxa. Ultimately, we hope this review will continue to stimulate thought, discussion, and the emergence of research focused on integrated phenotypes in behavioral ecology and endocrinology.
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Affiliation(s)
- Matthew J Fuxjager
- Department of Ecology, Evolution, and Organismal Biology, Brown University, Providence, RI 02906, USA.
| | - T Brandt Ryder
- Migratory Bird Center, Smithsonian Conservation Biology Institute, National Zoological Park, Washington, DC 20013, USA
| | - Nicole M Moody
- Department of Ecology, Evolution, and Organismal Biology, Brown University, Providence, RI 02906, USA
| | - Camilo Alfonso
- Department of Biological Sciences, Virginia Tech, Blacksburg, VA 24060, USA
| | | | - Julia Barske
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA
| | - Mariane Bosholn
- Animal Behavior Lab, Ecology Department, National Institute for Amazon Research, Manaus, Amazonas, Brazil
| | - W Alice Boyle
- Division of Biology, Kansas State University, Manhattan, KS 66506, USA
| | - Edward L Braun
- Department of Biology, University of Florida, Gainesville, FL 32611, USA
| | - Ioana Chiver
- GIGA Neurosciences, University of Liège, Liege, Belgium
| | - Roslyn Dakin
- Migratory Bird Center, Smithsonian Conservation Biology Institute, National Zoological Park, Washington, DC 20013, USA
| | - Lainy B Day
- Department of Biology, University of Mississippi, University, MS 38677, USA
| | - Robert Driver
- Department of Biology, East Carolina University, Greenville, NC 27858, USA
| | - Leonida Fusani
- Department of Behavioral and Cognitive Biology, University of Vienna, and Konrad Lorenz Institute of Ethology, University of Veterinary Medicine, Vienna
| | - Brent M Horton
- Department of Biology, Millersville University, Millersville, PA 17551, USA
| | - Rebecca T Kimball
- Department of Biology, University of Florida, Gainesville, FL 32611, USA
| | - Sara Lipshutz
- Department of Biology, Loyola University Chicago, Chicago, IL 60660, USA
| | - Claudio V Mello
- Department of Behavioral Neuroscience, Oregon Health and Science University, Portland, OR 97239, USA
| | | | - Michael S Webster
- Cornell Lab of Ornithology, Ithaca, NY 14853, USA; Department of Neurobiology and Behavior, Cornell University, Ithaca, NY 14853, USA
| | - Morgan Wirthlin
- Computational Biology Department, Carnegie Melon University, Pittsburgh, PA 15213, USA
| | - Roy Wollman
- Department of Physiology and Integrative Biology, University of California, Los Angeles, CA 90095, USA
| | - Ignacio T Moore
- Department of Biological Sciences, Virginia Tech, Blacksburg, VA 24060, USA
| | - Barney A Schlinger
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA; Department of Physiology and Integrative Biology, University of California, Los Angeles, CA 90095, USA; Smithsonian Tropical Research Institute, Panama City, Panama.
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Li X, Gao R, Chen G, Price AL, Øksnebjerg DB, Hosner PA, Zhou Y, Zhang G, Feng S. Draft genome assemblies of four manakins. Sci Data 2022; 9:564. [PMID: 36100590 PMCID: PMC9470731 DOI: 10.1038/s41597-022-01680-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Accepted: 09/04/2022] [Indexed: 11/23/2022] Open
Abstract
Manakins are a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family has served as a good model for the study of sexual selection. Here we present genome assemblies of four manakin species, including Cryptopipo holochlora, Dixiphia pipra (also known as Pseudopipra pipra), Machaeropterus deliciosus and Masius chrysopterus, generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 29 Mb and contig N50 of 169 Kb. On average, 12,055 protein-coding genes were annotated in the genomes, and 9.79% of the genomes were annotated as repetitive elements. We further identified 75 Mb of Z-linked sequences in manakins, containing 585 to 751 genes and an ~600 Kb pseudoautosomal region (PAR). One notable finding from these Z-linked sequences is that a possible Z-to-autosome/PAR reversal could have occurred in M. chrysopterus. These de novo genomes will contribute to a deeper understanding of evolutionary history and sexual selection in manakins. Measurement(s) | whole genome sequencing | Technology Type(s) | BGISEQ-500 Sequencing | Sample Characteristic - Organism | Pipridae |
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Affiliation(s)
- Xuemei Li
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.,BGI-Shenzhen, Shenzhen, 518083, China
| | - Rongsheng Gao
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.,BGI-Shenzhen, Shenzhen, 518083, China
| | - Guangji Chen
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.,BGI-Shenzhen, Shenzhen, 518083, China
| | - Alivia Lee Price
- Villum Centre for Biodiversity Genomics, Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200, Copenhagen, Denmark
| | - Daniel Bilyeli Øksnebjerg
- GLOBE Institute, Section for Evolutionary Genomics, University of Copenhagen, Copenhagen, Øster Farimagsgade 5, 1014, Copenhagen, Denmark
| | - Peter Andrew Hosner
- Natural History Museum of Denmark, University of Copenhagen, Universitetsparken 15, 2100, Copenhagen, Denmark.,Villum Center for Global Mountain Biodiversity, Biodiversity Section, GLOBE Institute, University of Copenhagen, Universitetsparken 15, 2100, Copenhagen, Denmark
| | - Yang Zhou
- BGI-Shenzhen, Shenzhen, 518083, China
| | - Guojie Zhang
- Villum Centre for Biodiversity Genomics, Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200, Copenhagen, Denmark.,Evolutionary & Organismal Biology Research Center, Zhejiang University School of Medicine, Hangzhou, 310058, China.,Liangzhu Laboratory, Zhejiang University Medical Center, 1369 West Wenyi Road, Hangzhou, 311121, China.,Innovation Center of Yangtze River Delta, Zhejiang University, Jiashan, 314102, China
| | - Shaohong Feng
- Evolutionary & Organismal Biology Research Center, Zhejiang University School of Medicine, Hangzhou, 310058, China. .,Liangzhu Laboratory, Zhejiang University Medical Center, 1369 West Wenyi Road, Hangzhou, 311121, China. .,Innovation Center of Yangtze River Delta, Zhejiang University, Jiashan, 314102, China.
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Yan R, Lu M, Zhang L, Yao J, Li S, Jiang Y. Effect of sex on the gut microbiota characteristics of passerine migratory birds. Front Microbiol 2022; 13:917373. [PMID: 36118231 PMCID: PMC9478027 DOI: 10.3389/fmicb.2022.917373] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Accepted: 08/05/2022] [Indexed: 11/23/2022] Open
Abstract
The gut microbiota, considered the “invisible organ” in the host animal, has been extensively studied recently. However, knowledge about the gut microbiota characteristics of passerine migratory birds during migration is limited. This study investigated the gut microbiota characteristics of three dominant migratory bird species (namely orange-flanked bluetail Tarsiger cyanurus, yellow-throated bunting Emberiza elegans, and black-faced bunting Emberiza spodocephala) in the same niche during spring migration and whether they were bird sex-specific. The compositions of gut microbiota species in these three migratory bird species and their male and female individuals were found to be similar. The main bacterial phyla were Proteobacteria, Firmicutes, Actinobacteria, and Bacteroidetes, and the main genera were Lactobacillus, Acinetobacter, Rickettsiella, and Mycobacterium; however, their relative abundance was different. Moreover, some potential pathogens and beneficial bacteria were found in all the three bird species. Alpha diversity analysis showed that in T. cyanurus, the richness and diversity of the gut microbiota were higher in male individuals than in female individuals, while the opposite was true for E. elegans and E. spodocephala. The alpha diversity analysis showed significant differences between male and female individuals of E. elegans (p < 0.05). The beta diversity analysis also revealed that the gut microbial community structure differed significantly between the male and female individuals of the three migratory bird species.
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Affiliation(s)
- Rongfei Yan
- College of Animal Science and Technology, College of Veterinary Medicine, Jilin Agricultural University, Changchun, China
| | - Meixia Lu
- School of Life Sciences, Jilin Agricultural University, Changchun, China
| | - Lishi Zhang
- College of Animal Science and Technology, College of Veterinary Medicine, Jilin Agricultural University, Changchun, China
| | - Jiyuan Yao
- College of Animal Science and Technology, College of Veterinary Medicine, Jilin Agricultural University, Changchun, China
| | - Shi Li
- College of Animal Science and Technology, College of Veterinary Medicine, Jilin Agricultural University, Changchun, China
| | - Yunlei Jiang
- College of Animal Science and Technology, College of Veterinary Medicine, Jilin Agricultural University, Changchun, China
- *Correspondence: Yunlei Jiang,
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Alfonso C, Jones BC, Vernasco BJ, Moore IT. Integrative Studies of Sexual Selection in Manakins, a Clade of Charismatic Tropical Birds. Integr Comp Biol 2021; 61:1267-1280. [PMID: 34251421 DOI: 10.1093/icb/icab158] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 05/07/2021] [Accepted: 07/07/2021] [Indexed: 11/14/2022] Open
Abstract
The neotropical manakins (family Pipridae) provide a great opportunity for integrative studies of sexual selection as nearly all of the 51 species are lek-breeding, an extreme form of polygyny, and highly sexually dimorphic both in appearance and behavior. Male courtship displays are often elaborate and include auditory cues, both vocal and mechanical, as well as visual elements. In addition, the displays are often extremely rapid, highly acrobatic, and, in some species, multiple males perform coordinated displays that form the basis of long-term coalitions. Male manakins also exhibit unique neuroendocrine, physiological, and anatomical adaptations to support the performance of these complex displays and the maintenance of their intricate social systems. The Manakin Genomics Research Coordination Network (Manakin RCN, https://www.manakinsrcn.org) has brought together researchers (many in this symposium and this issue) from across disciplines to address the implications of sexual selection on evolution, ecology, behavior, and physiology in manakins. The objective of this paper is to present some of the most pertinent and integrative manakin research as well as introducing the papers presented in this issue. The results discussed at the manakin symposium, part of the 2021 Society for Integrative and Comparative Biology Conference, highlight the remarkable genomic, behavioral, and physiological adaptations as well as the evolutionary causes and consequences of strong sexual selection pressures that are evident in manakins.
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Affiliation(s)
- Camilo Alfonso
- Department of Biological Sciences, Virginia Tech, Blacksburg, VA 24061, USA
| | - Blake C Jones
- Science and Mathematics, Bennington College, 1 College Dr., Bennington, VT 05201, USA
| | - Ben J Vernasco
- School of Biological Sciences, Washington State University, Pullman, WA, USA
| | - Ignacio T Moore
- Department of Biological Sciences, Virginia Tech, Blacksburg, VA 24061, USA
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