Characterization of the Complete Chloroplast Genome of Buddleja Lindleyana

The Complete Chloroplast Genome Sequence of Staphylea holocarpa (Staphyleaceae)

Staphylea holocarpa (Hemsley 1895) is an ornamental deciduous shrub or tree in the family Staphyleaceae. As the shortage of the wild resources, S. holocarpa is also a rare plant. The revelation of the species origin and evolution progress and the relation. Therefore, the S. holocarpa complete chloroplast genome sequence was completed and characterized by de novo assembly. The cp genome length of S. holocarpa was 160,461 bp and it has a typical quadripartite structure, consisted of an 89,760 bp large single-copy region and a 18,639 bp small single-copy region, which were divided by two inverted repeat regions of 26,031 bp. After genome annotation, it comes to 130 genes that were predicted, which includes 85, 8, and 37 encoded proteins, rRNA, and tRNA, respectively. A phylogenetic analysis has shown that the S. holocarpa cp genome is related to the Staphylea trifolia. This work will be useful for further population genomic and phylogenetic studies of S. holocarpa.

Three New Species of Aceria (Acari: Trombidiformes: Eriophyoidea) from China

Three new Aceria species from South China are described and illustrated. Aceria bischofiaesp. nov. was collected on Bischofia javanica Blume (Phyllanthaceae), inducing galls on surfaces of the leaves; Aceria cryptocaryaesp. nov. was collected on Cryptocarya metcalfiana Allen (Lauraceae), causing the formation of erinea on the undersurface of the leaves; and Aceria buddlejaesp. nov. was collected as a vagrant on Buddleja lindleyana Fort. (Scrophulariaceae) leaves, and no symptoms were observed on the host plant.

Characterization of the Complete Chloroplast Genome of Four Species in Callerya

BACKGROUND

Callerya reticulata (Bentham) Schot, Callerya dielsiana (Harms) P.K. Loc ex Z. Wei & Pedley, Callerya nitida var. hirsutissima (Z. Wei) X.Y. Zhu, and Callerya nitida (Bentham) R. Geesink, which belongs to the Leguminosae family, are important medicinal plants in China. The genus Callerya includes 26 species, 18 species are distributed in China, and the vine stems of some species are used as traditional medicinal herbs because they have important pharmacological activity. Due to the high similarity of appearance, it is difficult to identify them in the market by appearance alone. Therefore, circulating of Callerya-related materia medica on the market is confusing, sometimes even leading to drug safety problems. It is urgent to develop molecular methods for their identification.

OBJECTIVE

To sequence and analyze the complete chloroplast (cp) genomes of C. reticulata, C. dielsiana, C. nitida var. hirsutissima, and C. nitida and to analyze their cp genome differences as a basis for seeking easier DNA barcoding for their identification.

METHOD

After using Illumina high-throughput sequencing and nanopore sequencing to obtain the genome data, some bioinformatics software was used to assembly and analyze the molecular structure of cp genomes.

RESULTS

The complete cp genomes of the four species were circular molecules, which ranged from 130 435 to 132 546 bp, and GC contents ranged from 33.89% to 34.89%. Each of them includes a large single-copy region, a small single-copy region, and without large inverted repeat regions.

CONCLUSIONS

These results suggested that highly variable regions of the four cp genomes would provide useful plastid markers, which could be used as a potential genomic resource to resolve phylogenetic questions and provide a reference for mining specific DNA barcodes of these species.

HIGHLIGHTS

Our study provided highly effective molecular markers for subsequent phylogenetic analysis, species identification, and biogeographic analysis of Callerya.

Can Electrochemical Sensors Be Used for Identification and Phylogenetic Studies in Lamiaceae?

Electrochemical sensors have shown potential in recent years for plant species identification and phylogenetic studies. These works have been used to investigate the affinities of different species in many genera. However, the ability of electrochemical sensors to study relationships between different genera within a family has not been investigated. In this work, we selected 31 species in the Labiatae and 5 exotaxa as subjects to investigate the feasibility of electrochemical sensors at the genus level. The results show that electrochemical sensors are still very effective for the identification of these plants. Different pattern recognition techniques can make the identification more efficient. Also, the fingerprint profiles collected by the sensors can be used for phylogenetic studies of Labiatae. The phylogram divides all the species into five clusters, where the exotaxa are in one cluster. Species in the Labiatae are mainly distributed in four other clusters. Importantly, the different genera of species all showed close affinities, representing that electrochemical fingerprinting can well distinguish the affinities between the different genera. The results of this work demonstrate the great potential of electrochemical sensors in the study of plant phylogeny. Its application is not limited to the study at the species level, but can be extended to the genus level.