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Adhikari BN, Paskey AC, Frey KG, Bennett AJ, Long KA, Kuhn JH, Hamilton T, Glang L, Cer RZ, Goldberg TL, Bishop-Lilly KA. Virome profiling of fig wasps (Ceratosolen spp.) reveals virus diversity spanning four realms. Virology 2024; 591:109992. [PMID: 38246037 PMCID: PMC10849055 DOI: 10.1016/j.virol.2024.109992] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 01/03/2024] [Accepted: 01/08/2024] [Indexed: 01/23/2024]
Abstract
We investigated the virome of agaonid fig wasps (Ceratosolen spp.) inside syconia ("fruits") of various Ficus trees fed upon by frugivores such as pteropodid bats in Sub-Saharan Africa. This virome includes representatives of viral families spanning four realms and includes near-complete genome sequences of three novel viruses and fragments of five additional potentially novel viruses evolutionarily associated with insects, fungi, plants, and vertebrates. Our study provides evidence that frugivorous animals are exposed to a plethora of viruses by coincidental consumption of fig wasps, which are obligate pollinators of figs worldwide.
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Affiliation(s)
- Bishwo N Adhikari
- Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Command, Frederick, Fort Detrick, MD 21702, USA; Defense Threat Reduction Agency, Fort Belvoir, VA 22060, USA
| | - Adrian C Paskey
- Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Command, Frederick, Fort Detrick, MD 21702, USA; Leidos, Inc., Reston, VA 20190, USA
| | - Kenneth G Frey
- Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Command, Frederick, Fort Detrick, MD 21702, USA
| | - Andrew J Bennett
- Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Command, Frederick, Fort Detrick, MD 21702, USA; Department of Pathobiological Sciences, University of Wisconsin-Madison, Madison, WI 53706, USA; Leidos, Inc., Reston, VA 20190, USA
| | - Kyle A Long
- Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Command, Frederick, Fort Detrick, MD 21702, USA; Leidos, Inc., Reston, VA 20190, USA
| | - Jens H Kuhn
- Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA
| | - Theron Hamilton
- Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Command, Frederick, Fort Detrick, MD 21702, USA
| | - Lindsay Glang
- Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Command, Frederick, Fort Detrick, MD 21702, USA; Leidos, Inc., Reston, VA 20190, USA
| | - Regina Z Cer
- Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Command, Frederick, Fort Detrick, MD 21702, USA
| | - Tony L Goldberg
- Department of Pathobiological Sciences, University of Wisconsin-Madison, Madison, WI 53706, USA; Global Health Institute, University of Wisconsin-Madison, Madison, WI 53706, USA; Department of Zoology, Makerere University, Kampala, Uganda
| | - Kimberly A Bishop-Lilly
- Genomics and Bioinformatics Department, Biological Defense Research Directorate, Naval Medical Research Command, Frederick, Fort Detrick, MD 21702, USA.
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OUP accepted manuscript. J Mammal 2022. [DOI: 10.1093/jmammal/gyac027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Cabrera-Campos I, Carballo-Morales JD, Saldaña-Vázquez RA, Villalobos F, Ayala-Berdon J. Body mass explains digestive traits in small vespertilionid bats. J Comp Physiol B 2021; 191:427-438. [PMID: 33570665 DOI: 10.1007/s00360-021-01348-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2020] [Revised: 12/13/2020] [Accepted: 01/19/2021] [Indexed: 01/12/2023]
Abstract
Bats are unique among mammals in that they have evolved the capacity to fly. This has generated strong selective pressure on the morphology and function of their digestive system. Given that in bats intestinal length and nominal surface-area are proportional to body mass, this trait importantly relates to explaining some of their digestive characteristics. We described the relationship between digestive traits and body mass of four species of bats of the family Vespertilionidae living in a montane ecosystem in central Mexico. We calculated food transit time, apparent dry matter digestibility, and defecation rate in feeding trials under captive conditions. We also: (1) built a model of the relationship between digestive traits and body mass to determine if this association was consistent within the members of the family Vespertilionidae, and (2) mapped these traits along the phylogeny to explore how digestive characteristics may have evolved. In our feeding trials, body mass was positively related to transit time and negatively related to apparent dry matter digestibility. The model predicted accurately the transit time in bats with body mass < 20 g. The phylogenetic approach suggested that over the evolutionary history of the family, transit time decreased as digestibility increased. Because of the results obtained here, it is likely that for most bats of the family Vespertilionidae, adaptations in digestive traits to process food have followed evolutionary changes in their body mass. We discuss these findings in a physiological and ecological context.
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Affiliation(s)
- Iván Cabrera-Campos
- Maestría en Ciencias Biológicas, Centro Tlaxcala de Biología de la Conducta, Universidad Autónoma de Tlaxcala, Carretera Tlaxcala-Puebla Km. 1.5, C.P. 90062, Tlaxcala de Xicohténcatl, Tlaxcala, Mexico
| | - Jorge D Carballo-Morales
- Laboratorio de Sistemática, Genética y Evolución (LabSGE), Escuela de Ciencias Biológicas, Universidad Nacional, Heredia, Costa Rica
| | - Romeo A Saldaña-Vázquez
- Instituto de Investigaciones en Medio Ambiente, Xabier Gorostiaga S.J. Universidad Iberoamericana Puebla, Blvrd. del Niño Poblano 2901, Reserva Territorial Atlixcáyotl, C.P. 72810, San Andrés Cholula, Puebla, Mexico
| | - Federico Villalobos
- Laboratorio de Sistemática, Genética y Evolución (LabSGE), Escuela de Ciencias Biológicas, Universidad Nacional, Heredia, Costa Rica
| | - Jorge Ayala-Berdon
- CONACYT, Universidad Autónoma de Tlaxcala, Carretera Tlaxcala-Puebla Km. 1.5, C.P. 90062, Tlaxcala de Xicohténcatl, Tlaxcala, Mexico.
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O'Rourke DR, Mangan MT, Mangan KE, Bokulich NA, MacManes MD, Foster JT. Lord of the Diptera (and Moths and a Spider): Molecular Diet Analyses and Foraging Ecology of Indiana Bats in Illinois. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.623655] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
Effective management of endangered or threatened wildlife requires an understanding of how foraging habitats are used by those populations. Molecular diet analysis of fecal samples offers a cost-effective and non-invasive method to investigate how diets of wild populations vary with respect to spatial and temporal factors. For the federally endangered Indiana bat (Myotis sodalis), documenting its preferred food sources can provide critical information to promote effective conservation of this federally endangered species. Using cytochrome oxidase I amplicon sequence data from Indiana bat guano samples collected at two roosting areas in Cypress Creek National Wildlife Refuge, we found that dipteran taxa (i.e., flies) associated with riparian habitats were the most frequently detected taxon and represented the majority of the sequence diversity among the arthropods sampled. A select few arthropods from other taxa—especially spiders—are also likely important to Indiana bat diets in this refuge. A supervised learning analysis of diet components suggest only a small fraction of the frequently detected taxa are important contributors to spatial and temporal variation. Overall, these data depict the Indiana bat as a generalist consumer whose diet includes some prey items associated with particular seasonal or spatial components, along with other taxa repeatedly consumed throughout the entire foraging season. These molecular diet analyses suggest that protecting foraging resources specifically associated with the riparian habitat of Cypress Creek National Wildlife Refuge is essential to promote effective Indiana bat conservation.
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Oelbaum PJ, Fenton MB, Simmons NB, Broders HG. Community structure of a Neotropical bat fauna as revealed by stable isotope analysis: Not all species fit neatly into predicted guilds. Biotropica 2019. [DOI: 10.1111/btp.12700] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
| | - M. Brock Fenton
- Department of Biology University of Western Ontario London ON Canada
| | - Nancy B. Simmons
- Department of Mammalogy Division of Vertebrate Zoology American Museum of Natural History New York NY USA
| | - Hugh G. Broders
- Department of Biology University of Waterloo Waterloo ON Canada
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Gamboa Alurralde S, Díaz MM. Feeding habits of four species of Myotis (Mammalia, Chiroptera) from Argentina. MAMMAL RES 2019. [DOI: 10.1007/s13364-019-00431-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Blakey RV, Webb EB, Kesler DC, Siegel RB, Corcoran D, Johnson M. Bats in a changing landscape: Linking occupancy and traits of a diverse montane bat community to fire regime. Ecol Evol 2019; 9:5324-5337. [PMID: 31110682 PMCID: PMC6509396 DOI: 10.1002/ece3.5121] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2018] [Revised: 02/13/2019] [Accepted: 02/28/2019] [Indexed: 11/18/2022] Open
Abstract
Wildfires are increasing in incidence and severity across coniferous forests of the western United States, leading to changes in forest structure and wildlife habitats. Knowledge of how species respond to fire-driven habitat changes in these landscapes is limited and generally disconnected from our understanding of adaptations that underpin responses to fire.We aimed to investigate drivers of occupancy of a diverse bat community in a fire-altered landscape, while identifying functional traits that underpinned these relationships.We recorded bats acoustically at 83 sites (n = 249 recording nights) across the Plumas National Forest in the northern Sierra Nevada over 3 summers (2015-2017). We investigated relationships between fire regime, physiographic variables, forest structure and probability of bat occupancy for nine frequently detected species. We used fourth-corner regression and RLQ analysis to identify ecomorphological traits driving species-environment relationships across 17 bat species. Traits included body mass; call frequency, bandwidth, and duration; and foraging strategy based on vegetation structure (open, edge, or clutter).Relationships between bat traits and fire regime were underpinned by adaptations to diverse forest structure. Bats with traits adapting them to foraging in open habitats, including emitting longer duration and narrow bandwidth calls, were associated with higher severity and more frequent fires, whereas bats with traits consistent with clutter tolerance were negatively associated with fire frequency and burn severity. Relationships between edge-adapted bat species and fire were variable and may be influenced by prey preference or habitat configuration at a landscape scale.Predicted increases in fire frequency and severity in western US coniferous forests are likely to shift dominance in the bat community to open-adapted species and those able to exploit postfire resource pulses (aquatic insects, beetles, and snags). Managing for pyrodiversity within the western United States is likely important for maintaining bat community diversity, as well as diversity of other biotic communities.
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Affiliation(s)
- Rachel V. Blakey
- Missouri Cooperative Fish and Wildlife Research Unit, School of Natural ResourcesUniversity of MissouriColumbiaMissouri
- The Institute for Bird PopulationsPoint ReyesCalifornia
| | - Elisabeth B. Webb
- US Geological Survey, Missouri Cooperative Fish and Wildlife Research Unit, School of Natural ResourcesUniversity of MissouriColumbiaMissouri
| | | | | | - Derek Corcoran
- Missouri Cooperative Fish and Wildlife Research Unit, School of Natural ResourcesUniversity of MissouriColumbiaMissouri
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Segura-Trujillo CA, Willig MR, Álvarez-Castañeda ST. Correspondence between ecomorphotype and use of arthropod resources by bats of the genus Myotis. J Mammal 2018. [DOI: 10.1093/jmammal/gyy049] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- Cintya A Segura-Trujillo
- Centro de Investigaciones Biológicas del Noroeste, S.C. Av. Instituto Politécnico Nacional 195, Playa Palo de Santa Rita Sur, La Paz, Baja California Sur, México (CAS-T, STA-C)
| | - Michael R Willig
- Center for Environmental Sciences & Engineering and Department of Ecology & Evolutionary Biology, University of Connecticut, 3107 Horsebarn Hill Road, Storrs, CT 06269-4210, USA (MRW)
| | - Sergio Ticul Álvarez-Castañeda
- Centro de Investigaciones Biológicas del Noroeste, S.C. Av. Instituto Politécnico Nacional 195, Playa Palo de Santa Rita Sur, La Paz, Baja California Sur, México (CAS-T, STA-C)
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Denzinger A, Tschapka M, Schnitzler HU. The role of echolocation strategies for niche differentiation in bats. CAN J ZOOL 2018. [DOI: 10.1139/cjz-2017-0161] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Guilds subdivide bat assemblages into basic structural units of species with similar patterns of habitat use and foraging modes, but do not explain mechanisms of niche differentiation. Bats have evolved four different echolocation strategies allowing the access to four different trophic niche spaces differing in niche dimensions. Bats foraging in open and edge spaces use the “aerial hawking or trawling strategy” and detect and localize prey by evaluating pulse–echo trains in which the prey echo is unmasked. The pulse–echo pairs deliver mainly positional information on the prey and only little information on its nature. Signals are highly variable and are adapted for detection and localization in open space and (or) edge space. In narrow space, bats identify prey by solving a pattern recognition task. Bats using the “flutter detecting strategy” evaluate glint pattern in prey echoes; bats using the “active gleaning strategy” evaluate the spectral–temporal pattern of the prey–clutter echo complex; and bats using the “passive gleaning strategy” evaluate the pattern of prey-generated cues to find food and use echolocation only for spatial orientation. The less variable signals of narrow space bats are adapted for pattern recognition. The diverse and species-rich tropical bat assemblage at Barro Colorado Island, Panama, is here used as an exemplar for assigning bats to guilds, and we discuss the role of echolocation and other adaptations for niche differentiation within guilds.
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Affiliation(s)
- Annette Denzinger
- Animal Physiology, Institute for Neurobiology, University of Tübingen, Auf der Morgenstelle 28, 72076 Tübingen, Germany
| | - Marco Tschapka
- Institute for Evolutionary Ecology and Conservation Genomics, University of Ulm, Albert-Einstein-Allee 11, 89069 Ulm, Germany; Smithsonian Tropical Research Institute, Apartado, P.O. Box 0843-03092, Balboa Ancón, Panamá, Republica de Panama
| | - Hans-Ulrich Schnitzler
- Animal Physiology, Institute for Neurobiology, University of Tübingen, Auf der Morgenstelle 28, 72076 Tübingen, Germany
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García-Luis M, Briones-Salas M. Composición y actividad de la comunidad de murciélagos artropodívoros en parques eólicos del trópico mexicano. REV MEX BIODIVERS 2017. [DOI: 10.1016/j.rmb.2017.10.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
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The effects of seasonality on host-bat fly ecological networks in a temperate mountain cave. Parasitology 2016; 144:692-697. [PMID: 27938438 DOI: 10.1017/s0031182016002390] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Changes in the specialization of parasite-host interactions will be influenced by variations in host species composition. We evaluated this hypothesis by comparing the composition of bats and bat flies within a roost cave over one annual. Five bat and five bat fly species occupied the cave over the course of the study. Bat species composition was 40% different in the rainy season compared with the dry-cold and dry-warm seasons. Despite the incorporation of three new bat species into the cave during the rainy season, bat fly species composition was not affected by seasonality, since the bats that arrived in the rainy season only contributed one new bat fly species at a low prevalence. Bat-bat fly ecological networks were less specialized in the rainy season compared with the dry-cold and dry-warm seasons because of the increase of host overlap among bat fly species during this season. This study suggests that seasonality promote: (1) differences in host species composition, and (2) a reduction in the specialization of host-parasite ecological networks.
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Münzer OM, Schaetz BA, Kurta A. Diet of a Nearctic Species, the Evening Bat (Nycticeius humeralis), at the Northern Edge of Its Range. ACTA CHIROPTEROLOGICA 2016. [DOI: 10.3161/15081109acc2016.18.2.016] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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