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Bartolini-Lucenti S, Cirilli O, Melchionna M, Raia P, Tseng ZJ, Flynn JJ, Rook L. Virtual reconstruction of the Canis arnensis type (Canidae, Mammalia) from the Upper Valdarno Basin (Italy, Early Pleistocene). Sci Rep 2024; 14:8303. [PMID: 38594298 PMCID: PMC11004169 DOI: 10.1038/s41598-024-53073-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 01/27/2024] [Indexed: 04/11/2024] Open
Abstract
Taphonomic deformation, whether it be brittle or plastic, is possibly the most influential process hindering the correct understanding of fossil species morphology. This is especially true if the deformation affects type specimens or applies to or obscures taxonomically diagnostic or functionally significant traits. Target Deformation, a recently developed virtual manipulation protocol, was implemented to address this issue by applying landmark-guided restoration of the original, deformed fossils, using undeformed specimens (or parts thereof) of the same species as a reference. The enigmatic Early Pleistocene canid Canis arnensis provides a typical example of a fossil species in dire need of virtual restoration. Its lectotype specimen is heavily deformed and none of the few known skulls are well preserved, obscuring the recognition of its systematic and phylogenetic position. Our results indicate that the algorithm effectively countered the lectotype skull's laterolateral compression and its concomitant rostrocaudal elongation. Morphometrically, comparison of the retrodeformed cranium (IGF 867_W) with other specimens of the same species, and to other fossil and extant canid material, confirms IGF 867_W consistently clusters within C. arnensis variability. Overall, the evidence presented here confirms that Target Deformation provides a powerful tool to better characterize complex taxa like C. arnensis, whose knowledge is severely affected by the state of preservation of its fossil material.
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Affiliation(s)
- S Bartolini-Lucenti
- Earth Science Department, Paleo[Fab]Lab, University of Florence, via La Pira 4, 50121, Florence, Italy.
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/Columnes s/n, Campus de la UAB, 08193, Cerdanyola del Vallès, Spain.
| | - O Cirilli
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/Columnes s/n, Campus de la UAB, 08193, Cerdanyola del Vallès, Spain
- Laboratory of Evolutionary Biology, Department of Anatomy, College of Medicine, 520 W St. N.W., Washington, DC, 20059, USA
| | - M Melchionna
- Dipartimento di Scienze della Terra, dell'Ambiente e delle Risorse, Università degli Studi di Napoli Federico II, Via Cinthia 21, 80126, Naples, Italy
| | - P Raia
- Dipartimento di Scienze della Terra, dell'Ambiente e delle Risorse, Università degli Studi di Napoli Federico II, Via Cinthia 21, 80126, Naples, Italy
| | - Z J Tseng
- Department of Integrative Biology and Museum of Paleontology, University of California, Berkeley, CA, 94720, USA
| | - J J Flynn
- Division of Paleontology, American Museum of Natural History, 200 Central Park West, New York, NY, 10024, USA
| | - L Rook
- Earth Science Department, Paleo[Fab]Lab, University of Florence, via La Pira 4, 50121, Florence, Italy.
- Changes Foundation, Sapienza Università di Roma, Piazzale Aldo Moro 5, 00185, Rome, Italy.
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Tamagnini D, Michaud M, Meloro C, Raia P, Soibelzon L, Tambusso PS, Varela L, Maiorano L. Conical and sabertoothed cats as an exception to craniofacial evolutionary allometry. Sci Rep 2023; 13:13571. [PMID: 37604901 PMCID: PMC10442348 DOI: 10.1038/s41598-023-40677-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Accepted: 08/16/2023] [Indexed: 08/23/2023] Open
Abstract
Among evolutionary trends shaping phenotypic diversity over macroevolutionary scales, CREA (CRaniofacial Evolutionary Allometry) describes a tendency, among closely related species, for the smaller-sized of the group to have proportionally shorter rostra and larger braincases. Here, we used a phylogenetically broad cranial dataset, 3D geometric morphometrics, and phylogenetic comparative methods to assess the validity and strength of CREA in extinct and living felids. To test for the influence of biomechanical constraints, we quantified the impact of relative canine height on cranial shape evolution. Our results provided support to CREA at the family level. Yet, whereas felines support the rule, big cats, like Pantherinae and Machairodontinae, conform weakly if not at all with CREA predictions. Our findings suggest that Machairodontinae constitute one of the first well-supported exceptions to this biological rule currently known, probably in response to the biomechanical demands and developmental changes linked with their peculiar rostral adaptations. Our results suggest that the acquisition of extreme features concerning biomechanics, evo-devo constraints, and/or ecology is likely to be associated with peculiar patterns of morphological evolution, determining potential exceptions to common biological rules, for instance, by inducing variations in common patterns of evolutionary integration due to heterochronic changes under ratchet-like evolution.
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Affiliation(s)
- Davide Tamagnini
- Department of Biology and Biotechnologies "Charles Darwin", University of Rome "La Sapienza", Zoology Building, Viale dell'Università 32, 00185, Rome, Italy.
- Museum of Zoology, Sapienza Museum Centre, University of Rome "La Sapienza", Rome, Italy.
| | - Margot Michaud
- Evolution & Diversity Dynamics Lab, University of Liège, Liege, Belgium
| | - Carlo Meloro
- School of Biological and Environmental Sciences, Research Centre in Evolutionary Anthropology and Palaeoecology, Liverpool John Moores University, Liverpool, UK
| | - Pasquale Raia
- Dipartimento di Scienze della Terra, dell'Ambiente e delle Risorse, University of Naples Federico II, Naples, Italy
| | - Leopoldo Soibelzon
- División Paleontología Vertebrados, Museo de La Plata, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, Paseo del Bosque s/n, 1900, La Plata, Argentina
- Consejo Nacional de Investigaciones Científicas y Tecnicas (CONICET), Godoy Cruz 2290, C1425FQB, CABA, Argentina
| | - P Sebastián Tambusso
- Departamento de Paleontología, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400, Montevideo, Uruguay
- Departamento de Canelones, Servicio Académico Universitario y Centro de Estudios Paleontológicos (SAUCE-P), Universidad de la República, Santa Isabel s/n, 91500, Sauce, Uruguay
| | - Luciano Varela
- Departamento de Paleontología, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400, Montevideo, Uruguay
- Departamento de Canelones, Servicio Académico Universitario y Centro de Estudios Paleontológicos (SAUCE-P), Universidad de la República, Santa Isabel s/n, 91500, Sauce, Uruguay
| | - Luigi Maiorano
- Department of Biology and Biotechnologies "Charles Darwin", University of Rome "La Sapienza", Zoology Building, Viale dell'Università 32, 00185, Rome, Italy
- Museum of Zoology, Sapienza Museum Centre, University of Rome "La Sapienza", Rome, Italy
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3
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Barash A, Preiss-Bloom S, Machluf Y, Fabbri E, Malkinson D, Velli E, Mucci N, Barash A, Caniglia R, Dayan T, Dekel Y. Possible origins and implications of atypical morphologies and domestication-like traits in wild golden jackals (Canis aureus). Sci Rep 2023; 13:7388. [PMID: 37149712 PMCID: PMC10164184 DOI: 10.1038/s41598-023-34533-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Accepted: 05/03/2023] [Indexed: 05/08/2023] Open
Abstract
Deciphering the origins of phenotypic variations in natural animal populations is a challenging topic for evolutionary and conservation biologists. Atypical morphologies in mammals are usually attributed to interspecific hybridisation or de-novo mutations. Here we report the case of four golden jackals (Canis aureus), that were observed during a camera-trapping wildlife survey in Northern Israel, displaying anomalous morphological traits, such as white patches, an upturned tail, and long thick fur which resemble features of domesticated mammals. Another individual was culled under permit and was genetically and morphologically examined. Paternal and nuclear genetic profiles, as well as geometric morphometric data, identified this individual as a golden jackal rather than a recent dog/wolf-jackal hybrid. Its maternal haplotype suggested past introgression of African wolf (Canis lupaster) mitochondrial DNA, as previously documented in other jackals from Israel. When viewed in the context of the jackal as an overabundant species in Israel, the rural nature of the surveyed area, the abundance of anthropogenic waste, and molecular and morphological findings, the possibility of an individual presenting incipient stages of domestication should also be considered.
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Affiliation(s)
- Ayelet Barash
- School of Zoology and The Steinhardt Museum of Natural History, Tel Aviv University, Tel Aviv, Israel
- Unit of Agrigenomics, Shamir Research Institute, University of Haifa, 1290000, Kazerin, Israel
| | - Shlomo Preiss-Bloom
- School of Zoology and The Steinhardt Museum of Natural History, Tel Aviv University, Tel Aviv, Israel
| | - Yossy Machluf
- Unit of Agrigenomics, Shamir Research Institute, University of Haifa, 1290000, Kazerin, Israel
| | - Elena Fabbri
- Unit for Conservation Genetics (BIO‑CGE), Italian Institute for Environmental Protection and Research (ISPRA), Via Cà Fornacetta 9, Ozzano dell'Emilia, 40064, Bologna, Italy
| | - Dan Malkinson
- Department of Geography and Environmental Studies, University of Haifa, 3498838, Haifa, Israel
| | - Edoardo Velli
- Unit for Conservation Genetics (BIO‑CGE), Italian Institute for Environmental Protection and Research (ISPRA), Via Cà Fornacetta 9, Ozzano dell'Emilia, 40064, Bologna, Italy
| | - Nadia Mucci
- Unit for Conservation Genetics (BIO‑CGE), Italian Institute for Environmental Protection and Research (ISPRA), Via Cà Fornacetta 9, Ozzano dell'Emilia, 40064, Bologna, Italy
| | - Alon Barash
- The Azrieli Faculty of Medicine, Bar Ilan University, 8 Henrietta Szold St, Safed, Israel
| | - Romolo Caniglia
- Unit for Conservation Genetics (BIO‑CGE), Italian Institute for Environmental Protection and Research (ISPRA), Via Cà Fornacetta 9, Ozzano dell'Emilia, 40064, Bologna, Italy.
| | - Tamar Dayan
- School of Zoology and The Steinhardt Museum of Natural History, Tel Aviv University, Tel Aviv, Israel.
| | - Yaron Dekel
- Unit of Agrigenomics, Shamir Research Institute, University of Haifa, 1290000, Kazerin, Israel.
- The Cheryl Spencer Department of Nursing and The Cheryl Spencer Institute of Nursing Research, University of Haifa, 3498838, Haifa, Israel.
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Miranda FR, Garbino GST, Machado FA, Perini FA, Santos FR, Casali DM. Taxonomic revision of maned sloths, subgenus Bradypus ( Scaeopus), Pilosa, Bradypodidae, with revalidation of Bradypus crinitus Gray, 1850. J Mammal 2022. [DOI: 10.1093/jmammal/gyac059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
We present a taxonomic revision of maned sloths, subgenus Bradypus (Scaeopus), a taxon endemic to the Brazilian Atlantic Forest and currently composed of a single species, the vulnerable Bradypus torquatus. Our review is based on coalescent species delimitation analyses using mitochondrial and nuclear DNA, morphological analyses, and field observations. Our integrative approach demonstrates that two species of maned sloth can be recognized: the northern maned sloth (Bradypus torquatusIlliger, 1811) occurring in the Brazilian states of Bahia and Sergipe, and the southern maned sloth (Bradypus crinitusGray, 1850), occurring in Rio de Janeiro and Espirito Santo states. The two species diverged in the Early Pliocene and are allopatrically distributed. We discuss the biogeographic pattern of the two maned sloth species, comparing it with other Atlantic Forest mammals. We also suggest that the conservation status of both maned sloths needs to be reassessed after this taxonomic rearrangement.
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Affiliation(s)
- Flavia R Miranda
- Universidade Estadual de Santa Cruz, Campus Soane Nazaré de Andrade , Rod. Jorge Amado, Km 16 - Salobrinho, 45662-900 Ilhéus, Bahia, 64200-240 , Brazil
- Instituto de Pesquisa e Conservação de Tamanduás no Brasil , Rua do Comercio, s/n, Sala 130 Conjunto Porto das Barcas, Parnaíba, Piauí, 64200-240 , Brazil
| | - Guilherme S T Garbino
- Universidade Federal de Viçosa (UFV), Museu de Zoologia João Moojen, Departamento de Biologia Animal , Avenida Peter Henry Rolfs, s/n, Campus Universitário, 36570-900 Viçosa, Minas Gerais , Brazil
| | - Fabio A Machado
- Department of Biological Sciences, Virginia Tech , 926 West Campus Drive, Blacksburg, Virginia 24061 , USA
| | - Fernando A Perini
- Universidade Federal de Minas Gerais, Laboratório de Evolução de Mamíferos , Av. Antônio Carlos, 6627, 31270-901 Belo Horizonte, Minas Gerais , Brazil
| | - Fabricio R Santos
- Universidade Federal de Minas Gerais, Laboratório de Biodiversidade e Evolução Molecular , Av. Antônio Carlos, 6627, 31270-901 Belo Horizonte, Minas Gerais , Brazil
| | - Daniel M Casali
- Universidade Federal de Minas Gerais, Laboratório de Evolução de Mamíferos , Av. Antônio Carlos, 6627, 31270-901 Belo Horizonte, Minas Gerais , Brazil
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OUP accepted manuscript. J Mammal 2022. [DOI: 10.1093/jmammal/gyac039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] Open
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Hatlauf J, Krendl LM, Tintner J, Griesberger P, Heltai M, Markov G, Viranta S, Hackländer K. The canine counts! Significance of a craniodental measure to describe sexual dimorphism in canids: Golden jackals (Canis aureus) and African wolves (Canis lupaster). Mamm Biol 2021. [DOI: 10.1007/s42991-021-00133-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
AbstractSexual dimorphism is a widespread phenomenon among mammals, including carnivorans. While sexual dimorphism in golden jackals (Canis aureus) has been analysed in the past, in the related and apparently convergent canid, the African wolf (Canis lupaster), it is poorly studied and showed to be relatively small. Previously, sexual size dimorphism (SSD) research in these species was mostly based on skull and body measurements. In our study, we also included dental measurements, namely the diameter of the canine. We used 11 measured sections of 104 adult specimens, comprising 61 golden jackal and 43 African wolf skulls. Data analyses were carried out through logistic regression and conditional inference trees (CIT). To compare the results of SSD to other species, sexual dimorphism indices (SDI) were calculated. Golden jackals and African wolves show significant sexual size dimorphism, both in cranial and dental size. The logistic regression revealed that the mesiodistal diameter of the upper canine is most effective in discerning the sexes. The difference in the calculated SDI of the canine diameter between the sexes amounted to 8.71 in golden jackals and 14.11 in African wolves, respectively—with regional diversity. Thus, the canine diameter is an important measure to investigate SSD as well as an easy tool to apply in the field.
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Kitchener AC, Machado FA, Hayssen V, Moehlman PD, Viranta S. Consequences of the misidentification of museum specimens: the taxonomic status of Canis lupaster soudanicus. J Mammal 2020. [DOI: 10.1093/jmammal/gyaa080] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Researchers are increasingly using museum collections for taxonomy, systematics, phylogenetics, and faunal analyses, and they assume that taxonomic identifications on museum labels are correct. However, identifications may be incorrect or out of date, which could result in false conclusions from subsequent research. A recent geometric morphometrics analysis of skulls of African canids by Machado and Teta (2020) suggested that Canis lupaster soudanicus is a junior synonym of Lupulella adusta. However, the holotype of soudanicus was not measured and further investigation of the putative soudanicus specimens used in this study showed that these originally were identified as L. adusta. This original identification was confirmed by dental measurements, which also confirm that the holotype of soudanicus is Canis lupaster. Hence, soudanicus should not be synonymized with L. adusta. This example highlights the importance of careful checking of species identifications of museum specimens prior to research and, where possible, including (holo)types of taxa, before making taxonomic changes that could have important consequences for species conservation and management.
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Affiliation(s)
- Andrew C Kitchener
- Department of Natural Sciences, National Museums Scotland, Edinburgh, UK
| | - Fabio A Machado
- Department of Biology, University of Massachusetts, Boston, MA, USA
- División Mastozoología, Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”-CONICET, Buenos Aires, Argentina
| | - Virginia Hayssen
- Department of Biological Sciences, Smith College, Northampton, MA, USA
| | | | - Suvi Viranta
- Department of Anatomy, Faculty of Medicine, University of Helsinki, Helsinki, Finland
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Machado FA. Selection and Constraints in the Ecomorphological Adaptive Evolution of the Skull of Living Canidae (Carnivora, Mammalia). Am Nat 2020; 196:197-215. [PMID: 32673094 DOI: 10.1086/709610] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
The association between phenotype and ecology is essential for understanding the environmental drivers of morphological evolution. This is a particularly challenging task when dealing with complex traits, such as the skull, where multiple selective pressures are at play and evolution might be constrained by ontogenetic and genetic factors. I integrate morphometric tools, comparative methods, and quantitative genetics to investigate how ontogenetic constraints and selection might have interacted during the evolution of the skull in extant Canidae. The results confirm that the evolution of cranial morphology was largely adaptive and molded by changes in diet composition. While the investigation of the adaptive landscape reveals two main selective lines of least resistance (one associated with size and one associated with functional shape features), rates of evolution along size were higher than those found for shape dimensions, suggesting the influence of constraints on morphological evolution. Structural modeling analyses revealed that size, which is the line of most genetic/phenotypic variation, might have acted as a constraint, negatively impacting dietary evolution. Constraints might have been overcome in the case of selection for the consumption of large prey by associating strong selection along both size and shape directions. The results obtained here show that microevolutionary constraints may have played a role in shaping macroevolutionary patterns of morphological evolution.
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Segura V, Cassini GH, Prevosti FJ, Machado FA. Integration or Modularity in the Mandible of Canids (Carnivora: Canidae): a Geometric Morphometric Approach. J MAMM EVOL 2020. [DOI: 10.1007/s10914-020-09502-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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