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For: Gallo KA, Shao KL, Phillips LR, Regan JB, Koziolkiewicz M, Uznanski B, Stec WJ, Zon G. Alkyl phosphotriester modified oligodeoxyribonucleotides. V. Synthesis and absolute configuration of Rp and Sp diastereomers of an ethyl phosphotriester (Et) modified EcoRI recognition sequence, d[GGAA(Et)TTCC]. A synthetic approach to regio- and stereospecific ethylation-interference studies. Nucleic Acids Res 1986;14:7405-20. [PMID: 3020514 PMCID: PMC311759 DOI: 10.1093/nar/14.18.7405] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]  Open
Number Cited by Other Article(s)
1
Clavé G, Reverte M, Vasseur JJ, Smietana M. Modified internucleoside linkages for nuclease-resistant oligonucleotides. RSC Chem Biol 2021;2:94-150. [PMID: 34458777 PMCID: PMC8341215 DOI: 10.1039/d0cb00136h] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Accepted: 10/16/2020] [Indexed: 12/21/2022]  Open
2
Matsuno Y, Shoji T, Kim S, Chiba K. Synthetic Method for Oligonucleotide Block by Using Alkyl-Chain-Soluble Support. Org Lett 2016;18:800-3. [PMID: 26845521 DOI: 10.1021/acs.orglett.6b00077] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
3
Kan LS, Lin PY, Yano J. Syntheses and Characterization of Diastereoisomers of 2′-O-Methyladenylyl-3′,5′-2′-O-Methyladenosine Methyl Phosphonates and 2′-O-Methyladenylyl-3′,5′-2′-O-Methyladenosine Ethylphosphotriesters. J CHIN CHEM SOC-TAIP 2013. [DOI: 10.1002/jccs.199300099] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
4
Arunachalam TS, Wichert C, Appel B, Müller S. Mixed oligonucleotides for random mutagenesis: best way of making them. Org Biomol Chem 2012;10:4641-50. [PMID: 22552713 DOI: 10.1039/c2ob25328c] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
5
Quaedflieg PJLM, Pikkemaat JA, van der Marel GA, Kuyl-Yeheskiely E, Altona C, van Boom JH. Synthesis and physicochemical properties of decanucleotides containing (3′→ 5′)-O-CH2-O-linkages at predetermined positions. ACTA ACUST UNITED AC 2010. [DOI: 10.1002/recl.19931120104] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
6
Jones GDD, Le Pla RC, Farmer PB. Phosphotriester adducts (PTEs): DNA's overlooked lesion. Mutagenesis 2009;25:3-16. [DOI: 10.1093/mutage/gep038] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
7
Lebedev AV, Paul N, Yee J, Timoshchuk VA, Shum J, Miyagi K, Kellum J, Hogrefe RI, Zon G. Hot start PCR with heat-activatable primers: a novel approach for improved PCR performance. Nucleic Acids Res 2008;36:e131. [PMID: 18796527 PMCID: PMC2582603 DOI: 10.1093/nar/gkn575] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]  Open
8
Nifantiev EE, Grachev MK. Trivalent phosphorus acids amides as phosphorylating agents for alcohols and amines. RUSSIAN CHEMICAL REVIEWS 2007. [DOI: 10.1070/rc1994v063n07abeh000106] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
9
Ahmadibeni Y, Parang K. Synthesis and evaluation of modified oligodeoxynucleotides containing diphosphodiester internucleotide linkages. Angew Chem Int Ed Engl 2007;46:4739-43. [PMID: 17497623 DOI: 10.1002/anie.200605029] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
10
Ahmadibeni Y, Parang K. Synthesis and Evaluation of Modified Oligodeoxynucleotides Containing Diphosphodiester Internucleotide Linkages. Angew Chem Int Ed Engl 2007. [DOI: 10.1002/ange.200605029] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
11
Peyrottes S, Vasseur JJ, Imbach JL, Rayner B. Synthesis, Base Pairing Properties and Nuclease Resistance of Oligothymidylate Analogs Containing Methoxyphosphoramidate Internucleoside Linkages. ACTA ACUST UNITED AC 2006. [DOI: 10.1080/15257779408013213] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
12
Yáñez J, Argüello M, Osuna J, Soberón X, Gaytán P. Combinatorial codon-based amino acid substitutions. Nucleic Acids Res 2004;32:e158. [PMID: 15537836 PMCID: PMC534637 DOI: 10.1093/nar/gnh156] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2004] [Revised: 10/22/2004] [Accepted: 10/22/2004] [Indexed: 11/14/2022]  Open
13
Tsujikawa L, Weinfield M, Reha-Krantz LJ. Differences in replication of a DNA template containing an ethyl phosphotriester by T4 DNA polymerase and Escherichia coli DNA polymerase I. Nucleic Acids Res 2003;31:4965-72. [PMID: 12930945 PMCID: PMC212818 DOI: 10.1093/nar/gkg722] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
14
Bowman KJ, Pla RL, Guichard Y, Farmer PB, Jones GD. Evaluation of phosphodiesterase I-based protocols for the detection of multiply damaged sites in DNA: the detection of abasic, oxidative and alkylative tandem damage in DNA oligonucleotides. Nucleic Acids Res 2001;29:E101. [PMID: 11600720 PMCID: PMC60229 DOI: 10.1093/nar/29.20.e101] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
15
Hayakawa Y. Toward an Ideal Synthesis of Oligonucleotides: Development of a Novel Phosphoramidite Method with High Capability. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2001. [DOI: 10.1246/bcsj.74.1547] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
16
Hayakawa Y, Kawai R, Hirata A, Sugimoto JI, Kataoka M, Sakakura A, Hirose M, Noyori R. Acid/azole complexes as highly effective promoters in the synthesis of DNA and RNA oligomers via the phosphoramidite method. J Am Chem Soc 2001;123:8165-76. [PMID: 11516266 DOI: 10.1021/ja010078v] [Citation(s) in RCA: 66] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
17
Nifantiev EE, Grachev MK, Burmistrov SY. Amides of trivalent phosphorus acids as phosphorylating reagents for proton-donating nucleophiles. Chem Rev 2000;100:3755-800. [PMID: 11749327 DOI: 10.1021/cr9601371] [Citation(s) in RCA: 83] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
18
Gaytán P, Yañez J, Sánchez F, Mackie H, Soberón X. Combination of DMT-mononucleotide and Fmoc-trinucleotide phosphoramidites in oligonucleotide synthesis affords an automatable codon-level mutagenesis method. CHEMISTRY & BIOLOGY 1998;5:519-27. [PMID: 9751646 DOI: 10.1016/s1074-5521(98)90007-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
19
The chirality problem in P-substituted oligonucleotides. ACTA ACUST UNITED AC 1996. [DOI: 10.1007/bf02172106] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
20
Vaughn JP, Stekler J, Demirdji S, Mills JK, Caruthers MH, Iglehart JD, Marks JR. Inhibition of the erbB-2 tyrosine kinase receptor in breast cancer cells by phosphoromonothioate and phosphorodithioate antisense oligonucleotides. Nucleic Acids Res 1996;24:4558-64. [PMID: 8948649 PMCID: PMC146276 DOI: 10.1093/nar/24.22.4558] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]  Open
21
Thorogood H, Grasby JA, Connolly BA. Influence of the phosphate backbone on the recognition and hydrolysis of DNA by the EcoRV restriction endonuclease. A study using oligodeoxynucleotide phosphorothioates. J Biol Chem 1996;271:8855-62. [PMID: 8621526 DOI: 10.1074/jbc.271.15.8855] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]  Open
22
Sproat BS. Chemistry and applications of oligonucleotide analogues. J Biotechnol 1995;41:221-38. [PMID: 7544590 DOI: 10.1016/0168-1656(95)00012-f] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
23
Fearon KL, Stults JT, Bergot BJ, Christensen LM, Raible AM. Investigation of the 'n-1' impurity in phosphorothioate oligodeoxynucleotides synthesized by the solid-phase beta-cyanoethyl phosphoramidite method using stepwise sulfurization. Nucleic Acids Res 1995;23:2754-61. [PMID: 7651837 PMCID: PMC307101 DOI: 10.1093/nar/23.14.2754] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
24
Jen-Jacobson L. Structural-perturbation approaches to thermodynamics of site-specific protein-DNA interactions. Methods Enzymol 1995;259:305-44. [PMID: 8538460 DOI: 10.1016/0076-6879(95)59050-1] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
25
Beaucage SL, Iyer RP. The synthesis of modified oligonucleotides by the phosphoramidite approach and their applications. Tetrahedron 1993. [DOI: 10.1016/s0040-4020(01)87958-8] [Citation(s) in RCA: 277] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
26
Stereoselective interaction with chiral phosphorothioates at the central DNA kink of the EcoRI endonuclease-GAATTC complex. J Biol Chem 1992. [DOI: 10.1016/s0021-9258(18)35836-8] [Citation(s) in RCA: 55] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
27
Dahl O. Preparation of Nucleoside Phosphorothioates, Phosphorodithioates and Related Compounds. ACTA ACUST UNITED AC 1991. [DOI: 10.1080/01961779108048765] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
28
DNA Sequence Discrimination by EcoRI Endonuclease. ACTA ACUST UNITED AC 1991. [DOI: 10.1007/978-3-642-84292-4_10] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/31/2023]
29
Kuijpers WH, Huskens J, Koole LH, van Boeckel CA. Synthesis of well-defined phosphate-methylated DNA fragments: the application of potassium carbonate in methanol as deprotecting reagent. Nucleic Acids Res 1990;18:5197-205. [PMID: 2402444 PMCID: PMC332142 DOI: 10.1093/nar/18.17.5197] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
30
Olsen D, Kotzorek G, Sayers J, Eckstein F. Inhibition of the restriction endonuclease BanII using modified DNA substrates. Determination of phosphate residues critical for the formation of an active enzyme-DNA complex. J Biol Chem 1990. [DOI: 10.1016/s0021-9258(18)77314-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
31
Kuijpers W, Huskens J, van Boeckel C. The 2-(acetoxymethyl)benzoyl (AMB) group as a new base-protecting group, designed for the protection of (phosphate) modified oligonucleotides. Tetrahedron Lett 1990. [DOI: 10.1016/s0040-4039(00)97159-4] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
32
Uznanski B, Grajkowski A, Wilk A. The isopropoxyacetic group for convenient base protection during solid-support synthesis of oligodeoxyribonucleotides and their triester analogs. Nucleic Acids Res 1989;17:4863-71. [PMID: 2748339 PMCID: PMC318037 DOI: 10.1093/nar/17.12.4863] [Citation(s) in RCA: 31] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
33
Weinfeld M, Drake AF, Kuroda R, Livingston DC. Isolation and characterization of the diastereoisomers of a series of phosphate-ethylated dinucleoside monophosphates. Anal Biochem 1989;178:93-101. [PMID: 2729585 DOI: 10.1016/0003-2697(89)90362-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
34
Koziolkiewicz M, Uznanski B, Stec WJ. Phosphate-Modified Oligonucleotides. The Synthesis, Stereochemistry and ECO Ri Endonuclease Substrate Ability of Decanucleotides d[GGGAATTCCC] Bearing Altered Internucleotide Phosphate Function Between A and A1. ACTA ACUST UNITED AC 1989. [DOI: 10.1080/07328318908054167] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
35
Abramova TV, Vlassov VV, Lebedev AV, Ryte AS. Complementary addressed modification of nucleic acids with the alkylating derivatives of oligothymidylate ethyl phosphotriesters. Effect of the phosphotriester fragments' configuration. FEBS Lett 1988;236:243-5. [PMID: 2456955 DOI: 10.1016/0014-5793(88)80323-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
36
Marcus-Sekura CJ. Techniques for using antisense oligodeoxyribonucleotides to study gene expression. Anal Biochem 1988;172:289-95. [PMID: 3056098 DOI: 10.1016/0003-2697(88)90447-2] [Citation(s) in RCA: 120] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
37
Brill WKD, Caruthers MH. Synthesis and p-diastereomeric resolution of nucleoside 3′-O(s-alkyl) and nucleoside 3′-O(s-aryl) methylphosphonothioates. Tetrahedron Lett 1988. [DOI: 10.1016/s0040-4039(00)80262-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
38
Marcus-Sekura CJ, Woerner AM, Shinozuka K, Zon G, Quinnan GV. Comparative inhibition of chloramphenicol acetyltransferase gene expression by antisense oligonucleotide analogues having alkyl phosphotriester, methylphosphonate and phosphorothioate linkages. Nucleic Acids Res 1987;15:5749-63. [PMID: 3475677 PMCID: PMC306020 DOI: 10.1093/nar/15.14.5749] [Citation(s) in RCA: 153] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]  Open
39
Bower M, Summers MF, Powell C, Shinozuka K, Regan JB, Zon G, Wilson WD. Oligodeoxyribonucleoside methylphosphonates. NMR and UV spectroscopic studies of Rp-Rp and Sp-Sp methylphosphonate (Me) modified duplexes of (d[GGAATTCC])2. Nucleic Acids Res 1987;15:4915-30. [PMID: 3601658 PMCID: PMC305927 DOI: 10.1093/nar/15.12.4915] [Citation(s) in RCA: 51] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]  Open
40
Bower M, Summers MF, Kell B, Hoskins J, Zon G, Wilson WD. Synthesis and characterization of oligodeoxyribonucleotides containing terminal phosphates. NMR, UV spectroscopic and thermodynamic analysis of duplex formation of [d(pGGAATTCC)]2, [d(GGAATTCCp)]2 and [d(pGGAATTCCp)]2. Nucleic Acids Res 1987;15:3531-47. [PMID: 3575099 PMCID: PMC340747 DOI: 10.1093/nar/15.8.3531] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]  Open
41
Oligodeoxynucleoside methylphosphonates: synthesis and enzymic degradation. Tetrahedron Lett 1987. [DOI: 10.1016/s0040-4039(00)95529-1] [Citation(s) in RCA: 76] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
42
LaPlanche LA, James TL, Powell C, Wilson WD, Uznanski B, Stec WJ, Summers MF, Zon G. Phosphorothioate-modified oligodeoxyribonucleotides. III. NMR and UV spectroscopic studies of the Rp-Rp, Sp-Sp, and Rp-Sp duplexes, [d(GGSAATTCC)]2, derived from diastereomeric O-ethyl phosphorothioates. Nucleic Acids Res 1986;14:9081-93. [PMID: 3786144 PMCID: PMC311930 DOI: 10.1093/nar/14.22.9081] [Citation(s) in RCA: 68] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]  Open
43
Iyengar R, Bhat M, Riser M, Birnbaumer L. Receptor-specific desensitization of the S49 lymphoma cell adenylyl cyclase. Unaltered behavior of the regulatory component. J Biol Chem 1981. [DOI: 10.1016/s0021-9258(19)69325-7] [Citation(s) in RCA: 33] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]  Open
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