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For: Notredame C, O'Brien EA, Higgins DG. RAGA: RNA sequence alignment by genetic algorithm. Nucleic Acids Res 1997;25:4570-80. [PMID: 9358168 PMCID: PMC147093 DOI: 10.1093/nar/25.22.4570] [Citation(s) in RCA: 91] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
Number Cited by Other Article(s)
1
Kostenko DO, Korotkov EV. Application of the MAHDS Method for Multiple Alignment of Highly Diverged Amino Acid Sequences. Int J Mol Sci 2022;23:ijms23073764. [PMID: 35409125 PMCID: PMC8998981 DOI: 10.3390/ijms23073764] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Revised: 03/23/2022] [Accepted: 03/23/2022] [Indexed: 12/10/2022]  Open
2
Biological computation and computational biology: survey, challenges, and discussion. Artif Intell Rev 2021. [DOI: 10.1007/s10462-020-09951-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
3
Gilmore AR, Alderdice M, Savage KI, O'Reilly PG, Roddy AC, Dunne PD, Lawler M, McDade SS, Waugh DJ, McArt DG. ACE: A Workbench Using Evolutionary Genetic Algorithms for Analyzing Association in TCGA. Cancer Res 2019;79:2072-2075. [PMID: 30760519 DOI: 10.1158/0008-5472.can-18-1976] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2018] [Revised: 10/10/2018] [Accepted: 02/07/2019] [Indexed: 11/16/2022]
4
Bioinformatics and Translation Elongation. BIOINFORMATICS AND THE CELL 2018:197-238. [PMCID: PMC7121122 DOI: 10.1007/978-3-319-90684-3_9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/11/2023]
5
Broin PÓ, Smith TJ, Golden AA. Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach. BMC Bioinformatics 2015;16:22. [PMID: 25627106 PMCID: PMC4384390 DOI: 10.1186/s12859-015-0450-2] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2014] [Accepted: 01/02/2015] [Indexed: 11/10/2022]  Open
6
Jantschi L, Bolboaca S, Sestras R. Hard Problems in Gene Sequence Analysis: Classical Approaches and Suitability of Genetic Algorithms. BIOTECHNOL BIOTEC EQ 2014. [DOI: 10.1080/13102818.2009.10817653] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]  Open
7
Bussotti G, Notredame C, Enright AJ. Detecting and comparing non-coding RNAs in the high-throughput era. Int J Mol Sci 2013;14:15423-58. [PMID: 23887659 PMCID: PMC3759867 DOI: 10.3390/ijms140815423] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2013] [Revised: 07/16/2013] [Accepted: 07/17/2013] [Indexed: 02/07/2023]  Open
8
DeRonne KW, Karypis G. Pareto optimal pairwise sequence alignment. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2013;10:481-493. [PMID: 23929871 DOI: 10.1109/tcbb.2013.2] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
9
Kemena C, Bussotti G, Capriotti E, Marti-Renom MA, Notredame C. Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package. ACTA ACUST UNITED AC 2013;29:1112-9. [PMID: 23449094 DOI: 10.1093/bioinformatics/btt096] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
10
Bussotti G, Raineri E, Erb I, Zytnicki M, Wilm A, Beaudoing E, Bucher P, Notredame C. BlastR--fast and accurate database searches for non-coding RNAs. Nucleic Acids Res 2011;39:6886-95. [PMID: 21624887 PMCID: PMC3167602 DOI: 10.1093/nar/gkr335] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]  Open
11
Murienne J, Edgecombe GD, Giribet G. Including secondary structure, fossils and molecular dating in the centipede tree of life. Mol Phylogenet Evol 2010;57:301-13. [DOI: 10.1016/j.ympev.2010.06.022] [Citation(s) in RCA: 78] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2010] [Revised: 06/07/2010] [Accepted: 06/25/2010] [Indexed: 11/25/2022]
12
Taneda A. Multi-objective pairwise RNA sequence alignment. Bioinformatics 2010;26:2383-90. [DOI: 10.1093/bioinformatics/btq439] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
13
Using iterative methods for global multiple sequence alignment. Cold Spring Harb Protoc 2010;2009:pdb.top44. [PMID: 20147225 DOI: 10.1101/pdb.top44] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
14
Xiang X, Zhang D, Qin J, Fu Y. Ant Colony with Genetic Algorithm Based on Planar Graph for Multiple Sequence Alignment. ACTA ACUST UNITED AC 2010. [DOI: 10.3923/itj.2010.274.281] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
15
AlineaGA—a genetic algorithm with local search optimization for multiple sequence alignment. APPL INTELL 2009. [DOI: 10.1007/s10489-009-0189-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
16
Taneda A. An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast. BMC Bioinformatics 2008;9:521. [PMID: 19061486 PMCID: PMC2630964 DOI: 10.1186/1471-2105-9-521] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2008] [Accepted: 12/05/2008] [Indexed: 11/30/2022]  Open
17
Abraham M, Dror O, Nussinov R, Wolfson HJ. Analysis and classification of RNA tertiary structures. RNA (NEW YORK, N.Y.) 2008;14:2274-89. [PMID: 18824509 PMCID: PMC2578864 DOI: 10.1261/rna.853208] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2007] [Accepted: 07/05/2008] [Indexed: 05/19/2023]
18
Khaladkar M, Patel V, Bellofatto V, Wilusz J, Wang JTL. Detecting conserved secondary structures in RNA molecules using constrained structural alignment. Comput Biol Chem 2008;32:264-72. [PMID: 18472302 DOI: 10.1016/j.compbiolchem.2008.03.013] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2007] [Revised: 03/21/2008] [Accepted: 03/24/2008] [Indexed: 01/09/2023]
19
Lee ZJ, Su SF, Chuang CC, Liu KH. Genetic algorithm with ant colony optimization (GA-ACO) for multiple sequence alignment. Appl Soft Comput 2008. [DOI: 10.1016/j.asoc.2006.10.012] [Citation(s) in RCA: 136] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
20
Machado-Lima A, del Portillo HA, Durham AM. Computational methods in noncoding RNA research. J Math Biol 2007;56:15-49. [PMID: 17786447 DOI: 10.1007/s00285-007-0122-6] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2007] [Indexed: 11/26/2022]
21
Kjer KM, Gillespie JJ, Ober KA. Opinions on multiple sequence alignment, and an empirical comparison of repeatability and accuracy between POY and structural alignment. Syst Biol 2007;56:133-46. [PMID: 17366144 DOI: 10.1080/10635150601156305] [Citation(s) in RCA: 80] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]  Open
22
Pal S, Bandyopadhyay S, Ray S. Evolutionary computation in bioinformatics: a review. ACTA ACUST UNITED AC 2006. [DOI: 10.1109/tsmcc.2005.855515] [Citation(s) in RCA: 69] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
23
Jansson J, Hieu NT, Sung WK. Local gapped subforest alignment and its application in finding RNA structural motifs. J Comput Biol 2006;13:702-18. [PMID: 16706720 DOI: 10.1089/cmb.2006.13.702] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
24
Alkan C, Karakoç E, Nadeau JH, Sahinalp SC, Zhang K. RNA–RNA Interaction Prediction and Antisense RNA Target Search. J Comput Biol 2006;13:267-82. [PMID: 16597239 DOI: 10.1089/cmb.2006.13.267] [Citation(s) in RCA: 72] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
25
Hypsa V. Parasite histories and novel phylogenetic tools: Alternative approaches to inferring parasite evolution from molecular markers. Int J Parasitol 2006;36:141-55. [PMID: 16387305 DOI: 10.1016/j.ijpara.2005.10.010] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2005] [Revised: 10/19/2005] [Accepted: 10/28/2005] [Indexed: 10/25/2022]
26
Misof B, Niehuis O, Bischoff I, Rickert A, Erpenbeck D, Staniczek A. A Hexapod nuclear SSU rRNA secondary-structure model and catalog of taxon-specific structural variation. JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 2006;306:70-88. [PMID: 16161065 DOI: 10.1002/jez.b.21040] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
27
Gillespie JJ, Yoder MJ, Wharton RA. Predicted Secondary Structure for 28S and 18S rRNA from Ichneumonoidea (Insecta: Hymenoptera: Apocrita): Impact on Sequence Alignment and Phylogeny Estimation. J Mol Evol 2005;61:114-37. [PMID: 16059751 DOI: 10.1007/s00239-004-0246-x] [Citation(s) in RCA: 75] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2004] [Accepted: 03/08/2005] [Indexed: 11/27/2022]
28
Gillespie JJ, Munro JB, Heraty JM, Yoder MJ, Owen AK, Carmichael AE. A Secondary Structural Model of the 28S rRNA Expansion Segments D2 and D3 for Chalcidoid Wasps (Hymenoptera: Chalcidoidea). Mol Biol Evol 2005;22:1593-608. [PMID: 15843598 DOI: 10.1093/molbev/msi152] [Citation(s) in RCA: 91] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
29
Liu J, Wang JTL, Hu J, Tian B. A method for aligning RNA secondary structures and its application to RNA motif detection. BMC Bioinformatics 2005;6:89. [PMID: 15817128 PMCID: PMC1090556 DOI: 10.1186/1471-2105-6-89] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2004] [Accepted: 04/07/2005] [Indexed: 11/17/2022]  Open
30
Taneda A. Cofolga: a genetic algorithm for finding the common folding of two RNAs. Comput Biol Chem 2005;29:111-9. [PMID: 15833439 DOI: 10.1016/j.compbiolchem.2005.02.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2004] [Revised: 02/22/2005] [Accepted: 02/22/2005] [Indexed: 10/25/2022]
31
Gillespie JJ. Characterizing regions of ambiguous alignment caused by the expansion and contraction of hairpin-stem loops in ribosomal RNA molecules. Mol Phylogenet Evol 2004;33:936-43. [PMID: 15522814 DOI: 10.1016/j.ympev.2004.08.004] [Citation(s) in RCA: 59] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2004] [Revised: 06/24/2004] [Indexed: 10/26/2022]
32
Gillespie J, Cannone J, Gutell R, Cognato A. A secondary structural model of the 28S rRNA expansion segments D2 and D3 from rootworms and related leaf beetles (Coleoptera: Chrysomelidae; Galerucinae). INSECT MOLECULAR BIOLOGY 2004;13:495-518. [PMID: 15373807 DOI: 10.1111/j.0962-1075.2004.00509.x] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
33
Kjer KM. Aligned 18S and Insect Phylogeny. Syst Biol 2004;53:506-14. [PMID: 15503677 DOI: 10.1080/10635150490445922] [Citation(s) in RCA: 184] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]  Open
34
Horng JT, Wu LC, Lin CM, Yang BH. A genetic algorithm for multiple sequence alignment. Soft comput 2004. [DOI: 10.1007/s00500-004-0356-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
35
Behera N, Nanjundiah V. Phenotypic plasticity can potentiate rapid evolutionary change. J Theor Biol 2004;226:177-84. [PMID: 14643187 DOI: 10.1016/j.jtbi.2003.08.011] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
36
Misof B, Fleck G. Comparative analysis of mt LSU rRNA secondary structures of Odonates: structural variability and phylogenetic signal. INSECT MOLECULAR BIOLOGY 2003;12:535-547. [PMID: 14986915 DOI: 10.1046/j.1365-2583.2003.00432.x] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
37
Page RDM, Cruickshank R, Johnson KP. Louse (Insecta: Phthiraptera) mitochondrial 12S rRNA secondary structure is highly variable. INSECT MOLECULAR BIOLOGY 2002;11:361-369. [PMID: 12144702 DOI: 10.1046/j.1365-2583.2002.00346.x] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
38
Eddy SR. A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure. BMC Bioinformatics 2002;3:18. [PMID: 12095421 PMCID: PMC119854 DOI: 10.1186/1471-2105-3-18] [Citation(s) in RCA: 145] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2002] [Accepted: 07/02/2002] [Indexed: 11/22/2022]  Open
39
Mathews DH, Turner DH. Dynalign: an algorithm for finding the secondary structure common to two RNA sequences. J Mol Biol 2002;317:191-203. [PMID: 11902836 DOI: 10.1006/jmbi.2001.5351] [Citation(s) in RCA: 255] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
40
Notredame C. Recent progress in multiple sequence alignment: a survey. Pharmacogenomics 2002;3:131-44. [PMID: 11966409 DOI: 10.1517/14622416.3.1.131] [Citation(s) in RCA: 215] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]  Open
41
Dawson W, Suzuki K, Yamamoto K. A physical origin for functional domain structure in nucleic acids as evidenced by cross-linking entropy: II. J Theor Biol 2001;213:387-412. [PMID: 11735287 DOI: 10.1006/jtbi.2001.2437] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
42
Page RD. Comparative analysis of secondary structure of insect mitochondrial small subunit ribosomal RNA using maximum weighted matching. Nucleic Acids Res 2000;28:3839-45. [PMID: 11024161 PMCID: PMC110784 DOI: 10.1093/nar/28.20.3839] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2000] [Revised: 08/21/2000] [Accepted: 08/21/2000] [Indexed: 11/13/2022]  Open
43
Zuker M. Calculating nucleic acid secondary structure. Curr Opin Struct Biol 2000;10:303-10. [PMID: 10851192 DOI: 10.1016/s0959-440x(00)00088-9] [Citation(s) in RCA: 153] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
44
Cunningham CO, Aliesky H, Collins CM. Sequence and secondary structure variation in the Gyrodactylus (Platyhelminthes: Monogenea) ribosomal RNA gene array. J Parasitol 2000;86:567-76. [PMID: 10864256 DOI: 10.1645/0022-3395(2000)086[0567:sassvi]2.0.co;2] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]  Open
45
Chen JH, Le SY, Maizel JV. Prediction of common secondary structures of RNAs: a genetic algorithm approach. Nucleic Acids Res 2000;28:991-9. [PMID: 10648793 PMCID: PMC102574 DOI: 10.1093/nar/28.4.991] [Citation(s) in RCA: 74] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
46
Taylor WR, Sælensminde G, Eidhammer I. Multiple protein sequence alignment using double-dynamic programming. ACTA ACUST UNITED AC 2000. [DOI: 10.1016/s0097-8485(00)80003-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
47
Gotoh O. Multiple sequence alignment: algorithms and applications. ADVANCES IN BIOPHYSICS 1999;36:159-206. [PMID: 10463075 DOI: 10.1016/s0065-227x(99)80007-0] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
48
Rivas E, Eddy SR. A dynamic programming algorithm for RNA structure prediction including pseudoknots. J Mol Biol 1999;285:2053-68. [PMID: 9925784 DOI: 10.1006/jmbi.1998.2436] [Citation(s) in RCA: 369] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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