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For: Takénaka A, Moras D. Correlation between equi-partition of aminoacyl-tRNA synthetases and amino-acid biosynthesis pathways. Nucleic Acids Res 2020;48:3277-3285. [PMID: 31965182 PMCID: PMC7102985 DOI: 10.1093/nar/gkaa013] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Revised: 12/31/2019] [Accepted: 01/07/2020] [Indexed: 12/11/2022]  Open
Number Cited by Other Article(s)
1
Ma Y, Liu Y, Sun J, Min P, Liu W, Li L, Yi P, Guo R, Chen J. Ecological risks of high-ammonia environment with inhibited growth of Daphnia magna: Disturbed energy metabolism and oxidative stress. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;948:174959. [PMID: 39059654 DOI: 10.1016/j.scitotenv.2024.174959] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2024] [Revised: 07/18/2024] [Accepted: 07/20/2024] [Indexed: 07/28/2024]
2
Tang GQ, Hu H, Douglas J, Carter C. Primordial aminoacyl-tRNA synthetases preferred minihelices to full-length tRNA. Nucleic Acids Res 2024;52:7096-7111. [PMID: 38783009 PMCID: PMC11229368 DOI: 10.1093/nar/gkae417] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Revised: 04/30/2024] [Accepted: 05/10/2024] [Indexed: 05/25/2024]  Open
3
Wu W, Ma X, Chen R, Fan J, Ye W, Chen Z, Huang Q, Qian L. Effects of Phytosterol Ester Supplementation on Egg Characteristics, Eggshell Ultrastructure, Antioxidant Capacity, Liver Function and Hepatic Metabolites of Laying Hens during Peak Laying Period. Antioxidants (Basel) 2024;13:458. [PMID: 38671906 PMCID: PMC11047565 DOI: 10.3390/antiox13040458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Revised: 04/03/2024] [Accepted: 04/11/2024] [Indexed: 04/28/2024]  Open
4
Geng R, Zhang B, Cheng H, Wang M, Dang Z. Pyrrhotite-dependent microbial reduction and magnetic separation for efficient vanadium detoxification and recovery in contaminated aquifer. WATER RESEARCH 2024;251:121143. [PMID: 38277824 DOI: 10.1016/j.watres.2024.121143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 01/05/2024] [Accepted: 01/14/2024] [Indexed: 01/28/2024]
5
Douglas J, Bouckaert R, Carter CW, Wills P. Enzymic recognition of amino acids drove the evolution of primordial genetic codes. Nucleic Acids Res 2024;52:558-571. [PMID: 38048305 PMCID: PMC10810186 DOI: 10.1093/nar/gkad1160] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 10/28/2023] [Accepted: 11/20/2023] [Indexed: 12/06/2023]  Open
6
Patra SK, Douglas J, Wills PR, Bouckeart R, Betts L, Qing TG, Carter CW. Genomic database furnishes a spontaneous example of a functional Class II glycyl-tRNA synthetase urzyme. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.01.11.575260. [PMID: 38260702 PMCID: PMC10802616 DOI: 10.1101/2024.01.11.575260] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2024]
7
Labine LM, Pereira EAO, Kleywegt S, Jobst KJ, Simpson AJ, Simpson MJ. Environmental metabolomics uncovers oxidative stress, amino acid dysregulation, and energy impairment in Daphnia magna with exposure to industrial effluents. ENVIRONMENTAL RESEARCH 2023;234:116512. [PMID: 37394164 DOI: 10.1016/j.envres.2023.116512] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Revised: 05/29/2023] [Accepted: 06/24/2023] [Indexed: 07/04/2023]
8
Chen B, Mansour B, Zheng E, Liu Y, Gauld JW, Wang Q. Fundamentals behind the specificity of Cysteinyl-tRNA synthetase: MD and QM/MM joint investigations. Proteins 2023;91:354-362. [PMID: 36196751 DOI: 10.1002/prot.26433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2022] [Revised: 09/04/2022] [Accepted: 09/28/2022] [Indexed: 11/05/2022]
9
Labine LM, Oliveira Pereira EA, Kleywegt S, Jobst KJ, Simpson AJ, Simpson MJ. Sublethal Exposure of Per- and Polyfluoroalkyl Substances of Varying Chain Length and Polar Functionality Results in Distinct Metabolic Responses in Daphnia magna. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2023;42:242-256. [PMID: 36345965 DOI: 10.1002/etc.5517] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Revised: 09/11/2022] [Accepted: 11/04/2022] [Indexed: 06/16/2023]
10
Labine LM, Oliveira Pereira EA, Kleywegt S, Jobst KJ, Simpson AJ, Simpson MJ. Comparison of sub-lethal metabolic perturbations of select legacy and novel perfluorinated alkyl substances (PFAS) in Daphnia magna. ENVIRONMENTAL RESEARCH 2022;212:113582. [PMID: 35661729 DOI: 10.1016/j.envres.2022.113582] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Revised: 05/19/2022] [Accepted: 05/26/2022] [Indexed: 06/15/2023]
11
Characterization of metabolite, genome and volatile organic compound changes provides insights into the spoilage and cold adaptive markers of Acinetobacter johnsonii XY27. Lebensm Wiss Technol 2022. [DOI: 10.1016/j.lwt.2022.113453] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
12
Carter CW, Wills PR. The Roots of Genetic Coding in Aminoacyl-tRNA Synthetase Duality. Annu Rev Biochem 2021;90:349-373. [PMID: 33781075 DOI: 10.1146/annurev-biochem-071620-021218] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
13
Did Amino Acid Side Chain Reactivity Dictate the Composition and Timing of Aminoacyl-tRNA Synthetase Evolution? Genes (Basel) 2021;12:genes12030409. [PMID: 33809136 PMCID: PMC8001834 DOI: 10.3390/genes12030409] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 03/05/2021] [Accepted: 03/10/2021] [Indexed: 12/16/2022]  Open
14
Demongeot J, Moreira A, Seligmann H. Negative CG dinucleotide bias: An explanation based on feedback loops between Arginine codon assignments and theoretical minimal RNA rings. Bioessays 2020;43:e2000071. [PMID: 33319381 DOI: 10.1002/bies.202000071] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Revised: 11/23/2020] [Accepted: 11/26/2020] [Indexed: 01/05/2023]
15
Wills PR, Carter CW. Impedance Matching and the Choice Between Alternative Pathways for the Origin of Genetic Coding. Int J Mol Sci 2020;21:E7392. [PMID: 33036401 PMCID: PMC7582391 DOI: 10.3390/ijms21197392] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2020] [Revised: 09/28/2020] [Accepted: 09/30/2020] [Indexed: 01/07/2023]  Open
16
The evolution of aminoacyl-tRNA synthetases: From dawn to LUCA. BIOLOGY OF AMINOACYL-TRNA SYNTHETASES 2020;48:11-37. [DOI: 10.1016/bs.enz.2020.08.001] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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