1
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Collins JB, Stone SA, Koury EJ, Paredes AG, Shao F, Lovato C, Chen M, Shi R, Li AY, Candal I, Al Moutaa K, Moya ND, Andersen EC. Quantitative tests of albendazole resistance in Caenorhabditis elegans beta-tubulin mutants. Int J Parasitol Drugs Drug Resist 2024; 25:100556. [PMID: 38991432 DOI: 10.1016/j.ijpddr.2024.100556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Revised: 07/05/2024] [Accepted: 07/06/2024] [Indexed: 07/13/2024]
Abstract
Benzimidazole (BZ) anthelmintics are among the most important treatments for parasitic nematode infections in the developing world. Widespread BZ resistance in veterinary parasites and emerging resistance in human parasites raise major concerns for the continued use of BZs. Knowledge of the mechanisms of resistance is necessary to make informed treatment decisions and circumvent resistance. Benzimidazole resistance has traditionally been associated with mutations and natural variants in the C. elegans beta-tubulin gene ben-1 and orthologs in parasitic species. However, variants in ben-1 alone do not explain the differences in BZ responses across parasite populations. Here, we examined the roles of five C. elegans beta-tubulin genes (tbb-1, mec-7, tbb-4, ben-1, and tbb-6) in the BZ response as well as to determine if another beta-tubulin acts redundantly with ben-1. We generated C. elegans strains with a loss of each beta-tubulin gene, as well as strains with a loss of tbb-1, mec-7, tbb-4, or tbb-6 in a genetic background that also lacks ben-1. We found that the loss of ben-1 conferred the maximum level of resistance following exposure to a single concentration of albendazole, and the loss of a second beta-tubulin gene did not alter the level of resistance. However, additional traits other than larval development could be affected by the loss of additional beta-tubulins, and the roles of other beta-tubulin genes might be revealed at different albendazole concentrations. Therefore, further work is needed to fully define the possible roles of other beta-tubulin genes in the BZ response.
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Affiliation(s)
- J B Collins
- Department of Biology, Johns Hopkins University, Baltimore, MD, 21218, USA
| | - Skyler A Stone
- Department of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA
| | - Emily J Koury
- Department of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA
| | - Anna G Paredes
- Department of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA
| | - Fiona Shao
- Department of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA
| | - Crystal Lovato
- Department of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA
| | - Michael Chen
- Department of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA
| | - Richelle Shi
- Department of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA
| | - Anwyn Y Li
- Department of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA
| | - Isa Candal
- Department of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA
| | - Khadija Al Moutaa
- Department of Molecular Biosciences, Northwestern University, Evanston, IL, 60208, USA
| | - Nicolas D Moya
- Department of Biology, Johns Hopkins University, Baltimore, MD, 21218, USA
| | - Erik C Andersen
- Department of Biology, Johns Hopkins University, Baltimore, MD, 21218, USA.
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2
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Yang H, Lee D, Kim H, Cook DE, Paik YK, Andersen EC, Lee J. Glial expression of a steroidogenic enzyme underlies natural variation in hitchhiking behavior. Proc Natl Acad Sci U S A 2024; 121:e2320796121. [PMID: 38959036 PMCID: PMC11252821 DOI: 10.1073/pnas.2320796121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Accepted: 06/10/2024] [Indexed: 07/04/2024] Open
Abstract
Phoresy is an interspecies interaction that facilitates spatial dispersal by attaching to a more mobile species. Hitchhiking species have evolved specific traits for physical contact and successful phoresy, but the regulatory mechanisms involved in such traits and their evolution are largely unexplored. The nematode Caenorhabditis elegans displays a hitchhiking behavior known as nictation during its stress-induced developmental stage. Dauer-specific nictation behavior has an important role in natural C. elegans populations, which experience boom-and-bust population dynamics. In this study, we investigated the nictation behavior of 137 wild C. elegans strains sampled throughout the world. We identified species-wide natural variation in nictation and performed a genome-wide association mapping. We show that the variants in the promoter of nta-1, encoding a putative steroidogenic enzyme, underlie differences in nictation. This difference is due to the changes in nta-1 expression in glial cells, which implies that glial steroid metabolism regulates phoretic behavior. Population genetic analysis and geographic distribution patterns suggest that balancing selection maintained two nta-1 haplotypes that existed in ancestral C. elegans populations. Our findings contribute to further understanding of the molecular mechanism of species interaction and the maintenance of genetic diversity within natural populations.
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Affiliation(s)
- Heeseung Yang
- Department of Biological Sciences, Seoul National University, Seoul08826, Republic of Korea
| | - Daehan Lee
- Department of Molecular Biosciences, Northwestern University, Evanston, IL60208
- Department of Biological Sciences, Sungkyunkwan University, Suwon16419, Republic of Korea
| | - Heekyeong Kim
- Yonsei Proteome Research Center, Yonsei University, Seoul03722, Republic of Korea
| | - Daniel E. Cook
- Department of Molecular Biosciences, Northwestern University, Evanston, IL60208
| | - Young-Ki Paik
- Yonsei Proteome Research Center, Yonsei University, Seoul03722, Republic of Korea
| | - Erik C. Andersen
- Department of Molecular Biosciences, Northwestern University, Evanston, IL60208
| | - Junho Lee
- Department of Biological Sciences, Seoul National University, Seoul08826, Republic of Korea
- Research Institute of Basic Sciences, Seoul National University, Seoul08826, Republic of Korea
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Bell AD, Paaby AB. A web application for gene-based queries of CaeNDR RNA-seq data. MICROPUBLICATION BIOLOGY 2024; 2024:10.17912/micropub.biology.001194. [PMID: 38911436 PMCID: PMC11193113 DOI: 10.17912/micropub.biology.001194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Figures] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Revised: 05/01/2024] [Accepted: 06/04/2024] [Indexed: 06/25/2024]
Abstract
Variation in gene expression is a feature of all living systems and has recently been characterized extensively among wild strains of the model organism Caenorhabditis elegans. To enable researchers to query gene expression and gene expression variation at any gene of interest, we have created a user-friendly web application that shares RNA-seq transcription data for 208 wild C. elegans strains generated by the Caenorhabditis Natural Diversity Resource (CaeNDR). Here, we describe the features of the web application and the details of the data and data processing underlying it. We hope that this website, wildworm.biosci.gatech.edu/cendrexp/ , will help C. elegans researchers better understand their favorite genes and strains.
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Affiliation(s)
- Avery Davis Bell
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, United States
| | - Annalise B Paaby
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, United States
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4
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Leuthner TC, Zhang S, Kohrn BF, Stapleton HM, Baugh LR. Structure-specific variation in per- and polyfluoroalkyl substances toxicity among genetically diverse Caenorhabditis elegans strains. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.29.596269. [PMID: 38854041 PMCID: PMC11160736 DOI: 10.1101/2024.05.29.596269] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2024]
Abstract
Background There are >14,500 structurally diverse per- and polyfluoroalkyl substances (PFAS). Despite knowledge that these "forever chemicals" are in 99% of humans, mechanisms of toxicity and adverse health effects are incompletely known. Furthermore, the contribution of genetic variation to PFAS susceptibility and health consequences is unknown. Objectives We determined the toxicity of a structurally distinct set of PFAS in twelve genetically diverse strains of the genetic model system Caenorhabditis elegans. Methods Dose-response curves for four perfluoroalkyl carboxylic acids (PFNA, PFOA, PFPeA, and PFBA), two perfluoroalkyl sulfonic acids (PFOS and PFBS), two perfluoroalkyl sulfonamides (PFOSA and PFBSA), two fluoroether carboxylic acids (GenX and PFMOAA), one fluoroether sulfonic acid (PFEESA), and two fluorotelomers (6:2 FCA and 6:2 FTS) were determined in the C. elegans laboratory reference strain, N2, and eleven genetically diverse wild strains. Body length was quantified by image analysis at each dose after 48 hr of developmental exposure of L1 arrest-synchronized larvae to estimate effective concentration values (EC50). Results There was a significant range in toxicity among PFAS: PFOSA > PFBSA ≈ PFOS ≈ PFNA > PFOA > GenX ≈ PFEESA > PFBS ≈ PFPeA ≈ PFBA. Long-chain PFAS had greater toxicity than short-chain, and fluorosulfonamides were more toxic than carboxylic and sulfonic acids. Genetic variation explained variation in susceptibility to PFBSA, PFOS, PFBA, PFOA, GenX, PFEESA, PFPeA, and PFBA. There was significant variation in toxicity among C. elegans strains due to chain length, functional group, and between legacy and emerging PFAS. Conclusion C. elegans respond to legacy and emerging PFAS of diverse structures, and this depends on specific structures and genetic variation. Harnessing the natural genetic diversity of C. elegans and the structural complexity of PFAS is a powerful New Approach Methodology (NAM) to investigate structure-activity relationships and mechanisms of toxicity which may inform regulation of other PFAS to improve human and environmental health.
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Affiliation(s)
- Tess C. Leuthner
- Department of Biology, Duke University, Durham, North Carolina, USA
| | - Sharon Zhang
- Nicholas School of the Environment, Duke University, Durham, North Carolina, USA
| | - Brendan F Kohrn
- Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, USA
| | - Heather M. Stapleton
- Nicholas School of the Environment, Duke University, Durham, North Carolina, USA
| | - L. Ryan Baugh
- Department of Biology, Duke University, Durham, North Carolina, USA
- Center for Genomic and Computational Biology, Duke University, North Carolina, USA
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5
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Gang SS, Lažetić V. Microsporidia: Pervasive natural pathogens of Caenorhabditis elegans and related nematodes. J Eukaryot Microbiol 2024:e13027. [PMID: 38702921 DOI: 10.1111/jeu.13027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 02/02/2024] [Indexed: 05/06/2024]
Abstract
The nematode Caenorhabditis elegans is an invaluable host model for studying infections caused by various pathogens, including microsporidia. Microsporidia represent the first natural pathogens identified in C. elegans, revealing the previously unknown Nematocida genus of microsporidia. Following this discovery, the utilization of nematodes as a model host has rapidly expanded our understanding of microsporidia biology and has provided key insights into the cell and molecular mechanisms of antimicrosporidia defenses. Here, we first review the isolation history, morphological characteristics, life cycles, tissue tropism, genetics, and host immune responses for the four most well-characterized Nematocida species that infect C. elegans. We then highlight additional examples of microsporidia that infect related terrestrial and aquatic nematodes, including parasitic nematodes. To conclude, we assess exciting potential applications of the nematode-microsporidia system while addressing the technical advances necessary to facilitate future growth in this field.
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Affiliation(s)
- Spencer S Gang
- Molecular Biology Department, Colorado College, Colorado Springs, Colorado, USA
| | - Vladimir Lažetić
- Department of Biological Sciences, Columbian College of Arts & Sciences, The George Washington University, Washington, District of Columbia, USA
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6
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Collins J, Stone SA, Koury EJ, Paredes AG, Shao F, Lovato C, Chen M, Shi R, Li AY, Candal I, Al Moutaa K, Moya N, Andersen EC. Quantitative tests of albendazole resistance in beta-tubulin mutants. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.04.11.589070. [PMID: 38665774 PMCID: PMC11044196 DOI: 10.1101/2024.04.11.589070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 04/28/2024]
Abstract
Benzimidazole (BZ) anthelmintics are among the most important treatments for parasitic nematode infections in the developing world. Widespread BZ resistance in veterinary parasites and emerging resistance in human parasites raise major concerns for the continued use of BZs. Knowledge of the mechanisms of resistance is necessary to make informed treatment decisions and circumvent resistance. Benzimidazole resistance has traditionally been associated with mutations and natural variants in the C. elegans beta-tubulin gene ben-1 and orthologs in parasitic species. However, variants in ben-1 alone do not explain the differences in BZ responses across parasite populations. Here, we examine the roles of five C. elegans beta-tubulin genes (tbb-1, mec-7, tbb-4, ben-1, and tbb-6) to identify the role each gene plays in BZ response. We generated C. elegans strains with a loss of each beta-tubulin gene, as well as strains with a loss of tbb-1, mec-7, tbb-4, or tbb-6 in a genetic background that also lacks ben-1 to test beta-tubulin redundancy in BZ response. We found that only the individual loss of ben-1 conferred a substantial level of BZ resistance, although the loss of tbb-1 was found to confer a small benefit in the presence of albendazole (ABZ). The loss of ben-1 was found to confer an almost complete rescue of animal development in the presence of 30 μM ABZ, likely explaining why no additive effects caused by the loss of a second beta-tubulin were observed. We demonstrate that ben-1 is the only beta-tubulin gene in C. elegans where loss confers substantial BZ resistance.
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Affiliation(s)
- J.B. Collins
- Department of Biology, Johns Hopkins University, Baltimore, MD, 21218, USA
| | - Skyler A. Stone
- Department of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA
| | - Emily J. Koury
- Department of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA
| | - Anna G. Paredes
- Department of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA
| | - Fiona Shao
- Department of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA
| | - Crystal Lovato
- Department of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA
| | - Michael Chen
- Department of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA
| | - Richelle Shi
- Department of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA
| | - Anwyn Y. Li
- Department of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA
| | - Isa Candal
- Department of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA
| | - Khadija Al Moutaa
- Department of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA
| | - Nicolas Moya
- Department of Biology, Johns Hopkins University, Baltimore, MD, 21218, USA
| | - Erik C. Andersen
- Department of Biology, Johns Hopkins University, Baltimore, MD, 21218, USA
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7
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Mignerot L, Gimond C, Bolelli L, Bouleau C, Sandjak A, Boulin T, Braendle C. Natural variation in the Caenorhabditis elegans egg-laying circuit modulates an intergenerational fitness trade-off. eLife 2024; 12:RP88253. [PMID: 38564369 PMCID: PMC10987095 DOI: 10.7554/elife.88253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2024] Open
Abstract
Evolutionary transitions from egg laying (oviparity) to live birth (viviparity) are common across various taxa. Many species also exhibit genetic variation in egg-laying mode or display an intermediate mode with laid eggs containing embryos at various stages of development. Understanding the mechanistic basis and fitness consequences of such variation remains experimentally challenging. Here, we report highly variable intra-uterine egg retention across 316 Caenorhabditis elegans wild strains, some exhibiting strong retention, followed by internal hatching. We identify multiple evolutionary origins of such phenotypic extremes and pinpoint underlying candidate loci. Behavioral analysis and genetic manipulation indicates that this variation arises from genetic differences in the neuromodulatory architecture of the egg-laying circuitry. We provide experimental evidence that while strong egg retention can decrease maternal fitness due to in utero hatching, it may enhance offspring protection and confer a competitive advantage. Therefore, natural variation in C. elegans egg-laying behaviour can alter an apparent trade-off between different fitness components across generations. Our findings highlight underappreciated diversity in C. elegans egg-laying behavior and shed light on its fitness consequences. This behavioral variation offers a promising model to elucidate the molecular changes in a simple neural circuit underlying evolutionary shifts between alternative egg-laying modes in invertebrates.
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Affiliation(s)
| | | | | | | | - Asma Sandjak
- Université Côte d’Azur, CNRS, Inserm, IBVNiceFrance
| | - Thomas Boulin
- Institut NeuroMyoGène, CNRS, Inserm, Université de LyonLyonFrance
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8
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Shaver AO, Miller IR, Schaye ES, Moya ND, Collins J, Wit J, Blanco AH, Shao FM, Andersen EJ, Khan SA, Paredes G, Andersen EC. Quantifying the fitness effects of resistance alleles with and without anthelmintic selection pressure using Caenorhabditis elegans. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.01.578300. [PMID: 38370666 PMCID: PMC10871296 DOI: 10.1101/2024.02.01.578300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/20/2024]
Abstract
Albendazole and ivermectin are the two most commonly co-administered anthelmintic drugs in mass-drug administration programs worldwide. Despite emerging resistance, we do not fully understand the mechanisms of resistance to these drugs nor the consequences of delivering them in combination. Albendazole resistance has primarily been attributed to variation in the drug target, a beta-tubulin gene. Ivermectin targets glutamate-gated chloride channel (GluCl) genes, but it is unknown whether these genes are involved in ivermectin resistance in nature. Using Caenorhabditis elegans, we defined the fitness costs associated with loss of the drug target genes singly or in combinations of the genes that encode GluCl subunits. We quantified the loss-of function effects on three traits: (i) multi-generational competitive fitness, (ii) fecundity, and (iii) development. In competitive fitness and development assays, we found that a deletion of the beta-tubulin gene ben-1 conferred albendazole resistance, but ivermectin resistance required loss of two GluCl genes (avr-14 and avr-15) or loss of three GluCl genes (avr-14, avr-15, and glc-1). The fecundity assays revealed that loss of ben-1 did not provide any fitness benefit in albendazole and that no GluCl deletion mutants were resistant to ivermectin. Next, we searched for evidence of multi-drug resistance across the three traits. Loss of ben-1 did not confer resistance to ivermectin, nor did loss of any single GluCl subunit or combination confer resistance to albendazole. Finally, we assessed the development of 124 C. elegans wild strains across six benzimidazoles and seven macrocyclic lactones to identify evidence of multi-drug resistance between the two drug classes and found a strong phenotypic correlation within a drug class but not across drug classes. Because each gene affects various aspects of nematode physiology, these results suggest that it is necessary to assess multiple fitness traits to evaluate how each gene contributes to anthelmintic resistance.
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Affiliation(s)
- Amanda O. Shaver
- Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America
| | - Isabella R. Miller
- Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America
| | - Etta S. Schaye
- Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America
| | - Nicolas D. Moya
- Dept. of Biology, Johns Hopkins University, Baltimore, Maryland, United States of America
| | - J.B. Collins
- Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America
| | - Janneke Wit
- Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America
| | - Alyssa H. Blanco
- Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America
| | - Fiona M. Shao
- Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America
| | - Elliot J. Andersen
- Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America
| | - Sharik A. Khan
- Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America
| | - Gracie Paredes
- Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America
| | - Erik C. Andersen
- Dept. of Biology, Johns Hopkins University, Baltimore, Maryland, United States of America
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9
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Woodruff GC, Willis JH, Phillips PC. Patterns of Genomic Diversity in a Fig-Associated Close Relative of Caenorhabditis elegans. Genome Biol Evol 2024; 16:evae020. [PMID: 38302111 PMCID: PMC10883733 DOI: 10.1093/gbe/evae020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 01/22/2024] [Accepted: 01/23/2024] [Indexed: 02/03/2024] Open
Abstract
The evolution of reproductive mode is expected to have profound impacts on the genetic composition of populations. At the same time, ecological interactions can generate close associations among species, which can in turn generate a high degree of overlap in their spatial distributions. Caenorhabditis elegans is a hermaphroditic nematode that has enabled extensive advances in developmental genetics. Caenorhabditis inopinata, the sister species of C. elegans, is a gonochoristic nematode that thrives in figs and obligately disperses on fig wasps. Here, we describe patterns of genomic diversity in C. inopinata. We performed RAD-seq on individual worms isolated from the field across three Okinawan island populations. C. inopinata is about five times more diverse than C. elegans. Additionally, C. inopinata harbors greater differences in diversity among functional genomic regions (such as between genic and intergenic sequences) than C. elegans. Conversely, C. elegans harbors greater differences in diversity between high-recombining chromosome arms and low-recombining chromosome centers than C. inopinata. FST is low among island population pairs, and clear population structure could not be easily detected among islands, suggesting frequent migration of wasps between islands. These patterns of population differentiation appear comparable with those previously reported in its fig wasp vector. These results confirm many theoretical population genetic predictions regarding the evolution of reproductive mode and suggest C. inopinata population dynamics may be driven by wasp dispersal. This work sets the stage for future evolutionary genomic studies aimed at understanding the evolution of sex as well as the evolution of ecological interactions.
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Affiliation(s)
- Gavin C Woodruff
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
- Present address: Department of Biology, University of Oklahoma, Norman, OK 73019, USA
| | - John H Willis
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
| | - Patrick C Phillips
- Institute of Ecology and Evolution, University of Oregon, Eugene, OR 97403, USA
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10
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Moerdyk-Schauwecker MJ, Jahahn EK, Muñoz ZI, Robinson KJ, Phillips PC. Expansion of the split hygromycin toolkit for transgene insertion in Caenorhabditis elegans. MICROPUBLICATION BIOLOGY 2024; 2024:10.17912/micropub.biology.001091. [PMID: 38351905 PMCID: PMC10862133 DOI: 10.17912/micropub.biology.001091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Figures] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 01/09/2024] [Accepted: 01/24/2024] [Indexed: 02/16/2024]
Abstract
Engineered sites for genetic transformation have simplified transgene insertion in Caenorhabditis elegans . These strategies include our split hygromycin system (Stevenson et al. 2020) which allows for integration-specific selection of transgenes. Here we have expanded the split hygromycin selection system to include two additional chromosomal locations, both of which are permissive for germline expression, as well as engineered landing pads in three additional natural isolates. Corresponding guide and empty repair template plasmids are also available for each of these sites.
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Affiliation(s)
| | - Erin K Jahahn
- Institute of Ecology and Evolution, University of Oregon, Eugene, Oregon, United States
| | - Zachariah I Muñoz
- Institute of Ecology and Evolution, University of Oregon, Eugene, Oregon, United States
| | - Kristin J Robinson
- Institute of Ecology and Evolution, University of Oregon, Eugene, Oregon, United States
| | - Patrick C Phillips
- Institute of Ecology and Evolution, University of Oregon, Eugene, Oregon, United States
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