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Cao Z, Liu Z, Mao X. Application of Quorum Sensing in Metabolic Engineering. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:5062-5074. [PMID: 36967589 DOI: 10.1021/acs.jafc.3c00176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Metabolic engineering is widely utilized in the food and other fields and has the benefits of low-cost substrates, eco-friendly fermentation processes, and efficient substrate synthesis. Microbial synthesis by metabolic engineering requires maintaining the productive capacity of the microorganism. Moreover, economic reasons limit the use of inducers in the exogenous synthesis pathway. Most unicellular microorganisms can interact by emitting signaling molecules; this mechanism, known as quorum sensing (QS), is an autoinduced system of microorganisms. With the deepening research on QS systems of different microorganisms, its components are widely used to regulate the metabolic synthesis of microorganisms as a dynamic regulatory system. In this Review, we described the typical bacterial QS mechanisms. Then, we summarized various regulatory strategies for QS and their applications to metabolic engineering. Finally, we underlined the potential for QS modularity in future metabolic engineering and suggested stimulating research on fungal QS systems.
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Affiliation(s)
- Zhuoning Cao
- Qingdao Key Laboratory of Food Biotechnology, College of Food Science and Engineering, Ocean University of China, Qingdao 266404, China
- Key Laboratory of Biological Processing of Aquatic Products, China National Light Industry, Qingdao 266404, China
| | - Zhen Liu
- Qingdao Key Laboratory of Food Biotechnology, College of Food Science and Engineering, Ocean University of China, Qingdao 266404, China
- Key Laboratory of Biological Processing of Aquatic Products, China National Light Industry, Qingdao 266404, China
| | - Xiangzhao Mao
- Qingdao Key Laboratory of Food Biotechnology, College of Food Science and Engineering, Ocean University of China, Qingdao 266404, China
- Laboratory for Marine Drugs and Bioproducts of Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China
- Key Laboratory of Biological Processing of Aquatic Products, China National Light Industry, Qingdao 266404, China
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Wang H, Shang F, Shen J, Xu J, Chen X, Ni J, Yu L, Xue T. LsrR, the effector of AI-2 quorum sensing, is vital for the H 2O 2 stress response in mammary pathogenic Escherichia coli. Vet Res 2021; 52:127. [PMID: 34600565 PMCID: PMC8487509 DOI: 10.1186/s13567-021-00998-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2021] [Accepted: 09/11/2021] [Indexed: 12/12/2022] Open
Abstract
Mammary pathogenic Escherichia coli (MPEC) is an important causative agent of mastitis in dairy cows that results in reduced milk quality and production, and is responsible for severe economic losses in the dairy industry worldwide. Oxidative stress, as an imbalance between reactive oxygen species (ROS) and antioxidants, is a stress factor that is common in most bacterial habitats. The presence of ROS can damage cellular sites, including iron-sulfur clusters, cysteine and methionine protein residues, and DNA, and may cause bacterial cell death. Previous studies have reported that Autoinducer 2 (AI-2) can regulate E. coli antibiotic resistance and pathogenicity by mediating the intracellular receptor protein LsrR. This study explored the regulatory mechanism of LsrR on the H2O2 stress response in MPEC, showing that the transcript levels of lsrR significantly decreased under H2O2 stress conditions. The survival cell count of lsrR mutant XW10/pSTV28 was increased about 3080-fold when compared with that of the wild-type WT/pSTV28 in the presence of H2O2 and overexpression of lsrR (XW10/pUClsrR) resulted in a decrease in bacterial survival rates under these conditions. The β-galactosidase reporter assays showed that mutation of lsrR led to a remarkable increase in expression of the promoters of ahpCF, katG and oxyR, while lsrR-overexpressing significantly reduced the expression of ahpCF and katG. The electrophoretic mobility shift assays confirmed that LsrR could directly bind to the promoter regions of ahpCF and katG. These results revealed the important role played by LsrR in the oxidative stress response of MPEC.
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Affiliation(s)
- Hui Wang
- School of Life Sciences, Anhui Agricultural University, Hefei, 230036, Anhui, China
| | - Fei Shang
- School of Life Sciences, Anhui Agricultural University, Hefei, 230036, Anhui, China
| | - Jiawei Shen
- School of Life Sciences, Anhui Agricultural University, Hefei, 230036, Anhui, China
| | - Jingyi Xu
- School of Life Sciences, Anhui Agricultural University, Hefei, 230036, Anhui, China
| | - Xiaolin Chen
- School of Life Sciences, Anhui Agricultural University, Hefei, 230036, Anhui, China
| | - Jingtian Ni
- School of Life Sciences, Anhui Agricultural University, Hefei, 230036, Anhui, China
| | - Lumin Yu
- School of Life Sciences, Anhui Agricultural University, Hefei, 230036, Anhui, China. .,Institute of Microbe and Host Health, Linyi University, Linyi, 276005, Shandong, China.
| | - Ting Xue
- School of Life Sciences, Anhui Agricultural University, Hefei, 230036, Anhui, China.
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Hauk P, Stephens K, Virgile C, VanArsdale E, Pottash AE, Schardt JS, Jay SM, Sintim HO, Bentley WE. Homologous Quorum Sensing Regulatory Circuit: A Dual-Input Genetic Controller for Modulating Quorum Sensing-Mediated Protein Expression in E. coli. ACS Synth Biol 2020; 9:2692-2702. [PMID: 32822530 DOI: 10.1021/acssynbio.0c00179] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
We developed a hybrid synthetic circuit that co-opts the genetic regulation of the native bacterial quorum sensing autoinducer-2 and imposes an extra external controller for maintaining tightly controlled gene expression. This dual-input genetic controller was mathematically modeled and, by design, can be operated in three modes: a constitutive mode that enables consistent and high levels of expression; a tightly repressed mode in which there is very little background expression; and an inducible mode in which concentrations of two signals (arabinose and autoinducer-2) determine the net amplification of the gene(s)-of-interest. We demonstrate the utility of the circuit for the controlled expression of human granulocyte macrophage colony stimulating factor in an engineered probiotic E. coli. This dual-input genetic controller is the first homologous AI-2 quorum sensing circuit that has the ability to be operated in three different modes. We believe it has the potential for wide-ranging biotechnological applications due its versatile features.
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Affiliation(s)
- Pricila Hauk
- Institute for Bioscience and Biotechnology Research, College Park, Maryland 20742, United States
- Fischell Department of Bioengineering, University of Maryland, College Park, Maryland 20742, United States
| | - Kristina Stephens
- Institute for Bioscience and Biotechnology Research, College Park, Maryland 20742, United States
- Fischell Department of Bioengineering, University of Maryland, College Park, Maryland 20742, United States
- Robert E. Fischell Institute for Biomedical Devices, University of Maryland, College Park, Maryland 20742, United States
| | - Chelsea Virgile
- Institute for Bioscience and Biotechnology Research, College Park, Maryland 20742, United States
- Fischell Department of Bioengineering, University of Maryland, College Park, Maryland 20742, United States
| | - Eric VanArsdale
- Institute for Bioscience and Biotechnology Research, College Park, Maryland 20742, United States
- Fischell Department of Bioengineering, University of Maryland, College Park, Maryland 20742, United States
- Robert E. Fischell Institute for Biomedical Devices, University of Maryland, College Park, Maryland 20742, United States
| | - Alex Eli Pottash
- Fischell Department of Bioengineering, University of Maryland, College Park, Maryland 20742, United States
| | - John S. Schardt
- Fischell Department of Bioengineering, University of Maryland, College Park, Maryland 20742, United States
| | - Steven M. Jay
- Fischell Department of Bioengineering, University of Maryland, College Park, Maryland 20742, United States
| | - Herman O. Sintim
- Department of Chemistry and Institute for Drug Discovery, Purdue University, West Lafayette, Indiana 47907, United States
| | - William E. Bentley
- Institute for Bioscience and Biotechnology Research, College Park, Maryland 20742, United States
- Fischell Department of Bioengineering, University of Maryland, College Park, Maryland 20742, United States
- Robert E. Fischell Institute for Biomedical Devices, University of Maryland, College Park, Maryland 20742, United States
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Stephens K, Pozo M, Tsao CY, Hauk P, Bentley WE. Bacterial co-culture with cell signaling translator and growth controller modules for autonomously regulated culture composition. Nat Commun 2019; 10:4129. [PMID: 31511505 PMCID: PMC6739400 DOI: 10.1038/s41467-019-12027-6] [Citation(s) in RCA: 66] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2019] [Accepted: 08/14/2019] [Indexed: 12/21/2022] Open
Abstract
Synthetic biology and metabolic engineering have expanded the possibilities for engineered cell-based systems. The addition of non-native biosynthetic and regulatory components can, however, overburden the reprogrammed cells. In order to avoid metabolic overload, an emerging area of focus is on engineering consortia, wherein cell subpopulations work together to carry out a desired function. This strategy requires regulation of the cell populations. Here, we design a synthetic co-culture controller consisting of cell-based signal translator and growth-controller modules that, when implemented, provide for autonomous regulation of the consortia composition. The system co-opts the orthogonal autoinducer AI-1 and AI-2 cell-cell signaling mechanisms of bacterial quorum sensing (QS) to enable cross-talk between strains and a QS signal-controlled growth rate controller to modulate relative population densities. We further develop a simple mathematical model that enables cell and system design for autonomous closed-loop control of population trajectories. To avoid metabolic overload and divide tasks, synthetic biologists are turning to microbial consortia engineering. Here the authors design a co-culture controller that autonomously regulates population composition.
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Affiliation(s)
- Kristina Stephens
- Fischell Department of Bioengineering, University of Maryland, 8278 Paint Branch Drive, 5102 Clark Hall, College Park, MD, 20742, USA.,Institute for Bioscience and Biotechnology Research, University of Maryland, 8278 Paint Branch Drive, 5102 Clark Hall, College Park, MD, 20742, USA
| | - Maria Pozo
- Fischell Department of Bioengineering, University of Maryland, 8278 Paint Branch Drive, 5102 Clark Hall, College Park, MD, 20742, USA
| | - Chen-Yu Tsao
- Fischell Department of Bioengineering, University of Maryland, 8278 Paint Branch Drive, 5102 Clark Hall, College Park, MD, 20742, USA.,Institute for Bioscience and Biotechnology Research, University of Maryland, 8278 Paint Branch Drive, 5102 Clark Hall, College Park, MD, 20742, USA
| | - Pricila Hauk
- Fischell Department of Bioengineering, University of Maryland, 8278 Paint Branch Drive, 5102 Clark Hall, College Park, MD, 20742, USA.,Institute for Bioscience and Biotechnology Research, University of Maryland, 8278 Paint Branch Drive, 5102 Clark Hall, College Park, MD, 20742, USA
| | - William E Bentley
- Fischell Department of Bioengineering, University of Maryland, 8278 Paint Branch Drive, 5102 Clark Hall, College Park, MD, 20742, USA. .,Institute for Bioscience and Biotechnology Research, University of Maryland, 8278 Paint Branch Drive, 5102 Clark Hall, College Park, MD, 20742, USA.
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Billerbeck S, Brisbois J, Agmon N, Jimenez M, Temple J, Shen M, Boeke JD, Cornish VW. A scalable peptide-GPCR language for engineering multicellular communication. Nat Commun 2018; 9:5057. [PMID: 30498215 PMCID: PMC6265332 DOI: 10.1038/s41467-018-07610-2] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2018] [Accepted: 11/05/2018] [Indexed: 01/09/2023] Open
Abstract
Engineering multicellularity is one of the next breakthroughs for Synthetic Biology. A key bottleneck to building multicellular systems is the lack of a scalable signaling language with a large number of interfaces that can be used simultaneously. Here, we present a modular, scalable, intercellular signaling language in yeast based on fungal mating peptide/G-protein-coupled receptor (GPCR) pairs harnessed from nature. First, through genome-mining, we assemble 32 functional peptide-GPCR signaling interfaces with a range of dose-response characteristics. Next, we demonstrate that these interfaces can be combined into two-cell communication links, which serve as assembly units for higher-order communication topologies. Finally, we show 56 functional, two-cell links, which we use to assemble three- to six-member communication topologies and a three-member interdependent community. Importantly, our peptide-GPCR language is scalable and tunable by genetic encoding, requires minimal component engineering, and should be massively scalable by further application of our genome mining pipeline or directed evolution.
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Affiliation(s)
- Sonja Billerbeck
- Department of Chemistry, Columbia University, New York, New York, 10027, USA
| | - James Brisbois
- Department of Chemistry, Columbia University, New York, New York, 10027, USA
| | - Neta Agmon
- Institute for Systems Genetics and Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, 430 East 29th Street, New York, 10016, USA
| | - Miguel Jimenez
- Department of Chemistry, Columbia University, New York, New York, 10027, USA
- The Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, Massachusetts, 02139, USA
| | - Jasmine Temple
- Institute for Systems Genetics and Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, 430 East 29th Street, New York, 10016, USA
| | - Michael Shen
- Institute for Systems Genetics and Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, 430 East 29th Street, New York, 10016, USA
| | - Jef D Boeke
- Institute for Systems Genetics and Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, 430 East 29th Street, New York, 10016, USA
| | - Virginia W Cornish
- Department of Chemistry, Columbia University, New York, New York, 10027, USA.
- Department of Systems Biology, Columbia University, New York, New York, 10032, USA.
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