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For: Wu T, Chen W, Yang Z, Tan H, Wang J, Xiao X, Li M, Zhao M. DNA terminal structure-mediated enzymatic reaction for ultra-sensitive discrimination of single nucleotide variations in circulating cell-free DNA. Nucleic Acids Res 2018;46:e24. [PMID: 29190359 PMCID: PMC5829738 DOI: 10.1093/nar/gkx1218] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2017] [Revised: 11/08/2017] [Accepted: 11/23/2017] [Indexed: 12/18/2022]  Open
Number Cited by Other Article(s)
1
Liu X, Zhang X, Cui S, Xu S, Liu R, Wang B, Wei X, Zhang Q. A signal transmission strategy driven by gap-regulated exonuclease hydrolysis for hierarchical molecular networks. Commun Biol 2024;7:335. [PMID: 38493265 PMCID: PMC10944543 DOI: 10.1038/s42003-024-06036-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Accepted: 03/11/2024] [Indexed: 03/18/2024]  Open
2
Ma Y, Chu Y, Xu Z, Xie C, Ma X, Zhang L, Hu J, Zou B, Wu H, Zhou G. Ultrafast and Highly Specific Detection of One-Base Mutated Cell-Free DNA at a Very Low Abundance. Anal Chem 2024;96:117-126. [PMID: 38114445 DOI: 10.1021/acs.analchem.3c03326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2023]
3
Chen W, Xu H, Dai S, Wang J, Yang Z, Jin Y, Zou M, Xiao X, Wu T, Yan W, Zhang B, Lin Z, Zhao M. Detection of low-frequency mutations in clinical samples by increasing mutation abundance via the excision of wild-type sequences. Nat Biomed Eng 2023;7:1602-1613. [PMID: 37500748 DOI: 10.1038/s41551-023-01072-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Accepted: 06/23/2023] [Indexed: 07/29/2023]
4
Liu X, Zhang X, Yao Y, Shi P, Zeng C, Zhang Q. Construction of DNA-based molecular circuits using normally open and normally closed switches driven by lambda exonuclease. NANOSCALE 2023;15:7755-7764. [PMID: 37051702 DOI: 10.1039/d3nr00427a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
5
A homogeneous fluorescence assay for rapid and sensitive quantification of the global level of abasic sites in genomic DNA. DNA Repair (Amst) 2023;122:103451. [PMID: 36657214 DOI: 10.1016/j.dnarep.2023.103451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2022] [Revised: 11/26/2022] [Accepted: 01/10/2023] [Indexed: 01/15/2023]
6
Zhang W, Mu Y, Dong K, Zhang L, Yan B, Hu H, Liao Y, Zhao R, Shu W, Ye Z, Lu Y, Wan C, Sun Q, Li L, Wang H, Xiao X. PAM-independent ultra-specific activation of CRISPR-Cas12a via sticky-end dsDNA. Nucleic Acids Res 2022;50:12674-12688. [PMID: 36484104 PMCID: PMC9825152 DOI: 10.1093/nar/gkac1144] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2022] [Revised: 11/04/2022] [Accepted: 11/18/2022] [Indexed: 12/13/2022]  Open
7
Xue Y, Xie H, Wang Y, Feng S, Sun J, Huang J, Yang X. Novel and sensitive electrochemical/fluorescent dual-mode biosensing platform based on the cascaded cyclic amplification of enzyme-free DDSA and functional nucleic acids. Biosens Bioelectron 2022;218:114762. [DOI: 10.1016/j.bios.2022.114762] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Revised: 09/22/2022] [Accepted: 09/24/2022] [Indexed: 11/02/2022]
8
Chen JY, Wei QX, Yang LY, Li JY, Lu TC, Liu ZJ, Zhong GX, Weng XH, Xu XW. Multimodal Ochratoxin A-Aptasensor Using 3'-FAM-Enhanced Exonuclease I Tool and Magnetic Microbead Carrier. Anal Chem 2022;94:10921-10929. [PMID: 35904339 DOI: 10.1021/acs.analchem.1c05576] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
9
Sun J, Li C, Hu Y, Ding Y, Wu T. A structure change-induced fluorescent biosensor for uracil-DNA glycosylase activity detection based on the substrate preference of Lambda exonuclease. Talanta 2022;243:123350. [DOI: 10.1016/j.talanta.2022.123350] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Revised: 02/24/2022] [Accepted: 02/28/2022] [Indexed: 01/03/2023]
10
Li S, Fu Z, Wang C, Shang X, Zhao Y, Liu C, Pei M. An ultrasensitive and specific electrochemical biosensor for DNA detection based on T7 exonuclease-assisted regulatory strand displacement amplification. Anal Chim Acta 2021;1183:338988. [PMID: 34627518 DOI: 10.1016/j.aca.2021.338988] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 08/18/2021] [Accepted: 08/21/2021] [Indexed: 11/26/2022]
11
Zhang Z, Hu Y, Yuan W, Hu M, Deng Y, Xiao X, Wu T. Endonuclease IV-Regulated DNAzyme Motor for Universal Single-nucleotide Variation Discrimination. Anal Chem 2021;93:9939-9948. [PMID: 34235928 DOI: 10.1021/acs.analchem.1c02230] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
12
Zhang Z, Li L, Liu Q, Hu Y, Yuan W, Xiao X, Wu T. Sensitive DNA Mutation Detection at Physiological Temperature with Endonuclease IV by Inhibiting Its Side Activity. CHINESE J CHEM 2021. [DOI: 10.1002/cjoc.202100349] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
13
Tu B, Feng Z, Wang H, Zhang W, Ye W, Wang H, Xiao X, Zhao W, Wu T. Development of a background signal suppression probe for 8-oxoguanine DNA glycosylase detection. Anal Chim Acta 2021;1175:338741. [PMID: 34330449 DOI: 10.1016/j.aca.2021.338741] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2021] [Revised: 05/18/2021] [Accepted: 06/03/2021] [Indexed: 10/21/2022]
14
Yang Z, Chen W, Wang J, Shi M, Zhang R, Dai S, Wu T, Zhao M. Programmable One-Pot Enzymatic Reaction for Direct Fluorescence Detection of Ultralow-Abundance Mutations in the DNA Duplex. Anal Chem 2021;93:7086-7093. [PMID: 33901400 DOI: 10.1021/acs.analchem.1c00564] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
15
Feng Z, Zhang W, Li L, Tu B, Ye W, Tang X, Wang H, Xiao X, Wu T. A cost-effective detection of low-abundance mutation with DNA three-way junction structure and lambda exonuclease. CHINESE CHEM LETT 2021. [DOI: 10.1016/j.cclet.2020.06.009] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
16
Tang X, Chen N, Liu R, Hu Q, Liu N, Xiao X. Determination of low-abundance single-base point mutations based on endonuclease IV and branch migration system. Anal Chim Acta 2020;1134:28-33. [DOI: 10.1016/j.aca.2020.08.014] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Revised: 07/26/2020] [Accepted: 08/07/2020] [Indexed: 12/12/2022]
17
Zhang J, Zhao W, Zhang W, Liu Y, Qin Y, Zhang W, Zhou Z, Zhou Y, Wang H, Xiao X, Wu T. A path-choice-based biosensor to detect the activity of the alkaline phosphatase as the switch. Anal Chim Acta 2020;1135:64-72. [PMID: 33070860 DOI: 10.1016/j.aca.2020.08.040] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Revised: 08/19/2020] [Accepted: 08/23/2020] [Indexed: 10/23/2022]
18
Fu S, Li N, Li J, Deng Y, Xu L, Yu C, Su X. Engineering high-robustness DNA molecular circuits by utilizing nucleases. NANOSCALE 2020;12:6964-6970. [PMID: 32195488 DOI: 10.1039/c9nr09979d] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
19
Bai S, Xu B, Zhang Y, Zhang Y, Dang H, Yang S, Zuo C, Zhang L, Li J, Xie G. Tuning the specificity of DNA probes using bulge-loops for low-abundance SNV detection. Biosens Bioelectron 2020;154:112092. [DOI: 10.1016/j.bios.2020.112092] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2019] [Revised: 02/05/2020] [Accepted: 02/11/2020] [Indexed: 12/15/2022]
20
SLAM-MS: Mutation scanning of stem-loop amplicons with TaqMan probes by quantitative DNA melting analysis. Sci Rep 2020;10:5476. [PMID: 32214156 PMCID: PMC7096437 DOI: 10.1038/s41598-020-62173-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2020] [Accepted: 03/09/2020] [Indexed: 12/30/2022]  Open
21
Chen X, Liu N, Liu L, Chen W, Chen N, Lin M, Xu J, Zhou X, Wang H, Zhao M, Xiao X. Thermodynamics and kinetics guided probe design for uniformly sensitive and specific DNA hybridization without optimization. Nat Commun 2019;10:4675. [PMID: 31611572 PMCID: PMC6791858 DOI: 10.1038/s41467-019-12593-9] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Accepted: 09/18/2019] [Indexed: 12/15/2022]  Open
22
Lapitan LDS, Xu Y, Guo Y, Zhou D. Combining magnetic nanoparticle capture and poly-enzyme nanobead amplification for ultrasensitive detection and discrimination of DNA single nucleotide polymorphisms. NANOSCALE 2019;11:1195-1204. [PMID: 30601516 DOI: 10.1039/c8nr07641c] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
23
Yu Y, Ma L, Li L, Deng Y, Xu L, Liu H, Xiao L, Su X. Digestion of Dynamic Substrate by Exonuclease Reveals High Single-Mismatch Selectivity. Anal Chem 2018;90:13655-13662. [DOI: 10.1021/acs.analchem.8b03963] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
24
Malpartida-Cardenas K, Rodriguez-Manzano J, Yu LS, Delves MJ, Nguon C, Chotivanich K, Baum J, Georgiou P. Allele-Specific Isothermal Amplification Method Using Unmodified Self-Stabilizing Competitive Primers. Anal Chem 2018;90:11972-11980. [PMID: 30226760 PMCID: PMC6195307 DOI: 10.1021/acs.analchem.8b02416] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
25
Rodda AE, Parker BJ, Spencer A, Corrie SR. Extending Circulating Tumor DNA Analysis to Ultralow Abundance Mutations: Techniques and Challenges. ACS Sens 2018;3:540-560. [PMID: 29441780 DOI: 10.1021/acssensors.7b00953] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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