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Xie D, Han K, Jiang Q, Xie S, Zhou J, Zhang Y, Xu J, He Y, Zhao P, Yang X. Design, synthesis, and inhibitory activity of hydroquinone ester derivatives against mushroom tyrosinase. RSC Adv 2024; 14:6085-6095. [PMID: 38370459 PMCID: PMC10870825 DOI: 10.1039/d4ra00007b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2024] [Accepted: 02/05/2024] [Indexed: 02/20/2024] Open
Abstract
Tyrosinase is a widely distributed copper-containing enzyme found in various organisms, playing a crucial role in the process of melanin production. Inhibiting its activity can reduce skin pigmentation. Hydroquinone is an efficient inhibitor of tyrosinase, but its safety has been a subject of debate. In this research, a scaffold hybridization strategy was employed to synthesize a series of hydroquinone-benzoyl ester analogs (3a-3g). The synthesized compounds were evaluated for their inhibitory activity against mushroom tyrosinase (mTyr). The results revealed that these hydroquinone-benzoyl ester analogs exhibited inhibitory activity against mTyr, with compounds 3a-3e displaying higher activity, with compound 3b demonstrating the highest potency (IC50 = 0.18 ± 0.06 μM). Kinetic studies demonstrated that the inhibition of mTyr by compounds 3a-3e was reversible, although their inhibition mechanisms varied. Compounds 3a and 3c exhibited non-competitive inhibition, while 3b displayed mixed inhibition, and 3d and 3e showed competitive inhibition. UV spectroscopy analysis indicated that none of these compounds chelated with copper ions in the active center of the enzyme. Molecular docking simulations and molecular dynamics studies revealed that compounds 3a-3e could access the active pocket of mTyr and interact with amino acid residues in the active site. These interactions influenced the conformational flexibility of the receptor protein, subsequently affecting substrate-enzyme binding and reducing enzyme catalytic activity, in line with experimental findings. Furthermore, in vitro melanoma cytotoxicity assay of compound 3b demonstrated its higher toxicity to A375 cells, while displaying low toxicity to HaCaT cells, with a dose-dependent effect. These results provide a theoretical foundation and practical basis for the development of novel tyrosinase inhibitors.
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Affiliation(s)
- Dong Xie
- Key Laboratory of National Forestry and Grassland Administration on Highly-Efficient Utilization of Forestry Biomass Resources in Southwest China, Southwest Forestry University Kunming Yunnan 650224 PR China
| | - Kangjia Han
- Key Laboratory of National Forestry and Grassland Administration on Highly-Efficient Utilization of Forestry Biomass Resources in Southwest China, Southwest Forestry University Kunming Yunnan 650224 PR China
| | - Qian Jiang
- Key Laboratory of National Forestry and Grassland Administration on Highly-Efficient Utilization of Forestry Biomass Resources in Southwest China, Southwest Forestry University Kunming Yunnan 650224 PR China
| | - Sida Xie
- Key Laboratory of National Forestry and Grassland Administration on Highly-Efficient Utilization of Forestry Biomass Resources in Southwest China, Southwest Forestry University Kunming Yunnan 650224 PR China
| | - Jielong Zhou
- Key Laboratory of National Forestry and Grassland Administration on Highly-Efficient Utilization of Forestry Biomass Resources in Southwest China, Southwest Forestry University Kunming Yunnan 650224 PR China
| | - Yingjun Zhang
- Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences Kunming Yunnan 650204 PR China
| | - Junming Xu
- Institute of Chemical Industry of Forest Products, Chinese Academy of Forestry Nanjing Jiangsu 210042 PR China
| | - Yuanping He
- Kunming Beiye Dai Medicine Research Institute Kunming Yunnan 650499 PR China
| | - Ping Zhao
- Key Laboratory of Ministry of Education for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Southwest Forestry University Kunming Yunnan 650224 PR China
| | - Xiaoqin Yang
- Key Laboratory of National Forestry and Grassland Administration on Highly-Efficient Utilization of Forestry Biomass Resources in Southwest China, Southwest Forestry University Kunming Yunnan 650224 PR China
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Ito E, Munakata R, Yazaki K. Letter to the Editor: Gromwell, a Purple Link between Traditional Japanese Culture and Plant Science. PLANT & CELL PHYSIOLOGY 2023:7167862. [PMID: 37196028 DOI: 10.1093/pcp/pcad038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Revised: 04/24/2023] [Accepted: 04/28/2023] [Indexed: 05/19/2023]
Affiliation(s)
- Emi Ito
- Institute for Women's Education in Science, Technology, Engineering, Arts, and Mathematics, Ochanomizu University, 2-1-1 Otsuka, Bunkyo-ku, Tokyo, 112-8610 Japan
- Institute for Human Life Science, Ochanomizu University, 2-1-1 Otsuka, Bunkyo-ku, Tokyo, 112-8610 Japan
| | - Ryosuke Munakata
- Laboratory of Plant Gene Expression, Research Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji, 611-0011 Japan
- Japan Science and Technology Agency (JST), PRESTO, 4-1-8, Honcho, Kawaguchi-shi, Saitama, 332-0012 Japan
| | - Kazufumi Yazaki
- Laboratory of Plant Gene Expression, Research Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji, 611-0011 Japan
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Wang R, Liu C, Lyu C, Sun J, Kang C, Ma Y, Wan X, Guo J, Shi L, Wang J, Huang L, Wang S, Guo L. The discovery and characterization of AeHGO in the branching route from shikonin biosynthesis to shikonofuran in Arnebia euchroma. FRONTIERS IN PLANT SCIENCE 2023; 14:1160571. [PMID: 37180378 PMCID: PMC10167036 DOI: 10.3389/fpls.2023.1160571] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Accepted: 04/07/2023] [Indexed: 05/16/2023]
Abstract
Shikonin derivatives are natural naphthoquinone compounds and the main bioactive components produced by several boraginaceous plants, such as Lithospermum erythrorhizon and Arnebia euchroma. Phytochemical studies utilizing both L. erythrorhizon and A. euchroma cultured cells indicate the existence of a competing route branching out from the shikonin biosynthetic pathway to shikonofuran. A previous study has shown that the branch point is the transformation from (Z)-3''-hydroxy-geranylhydroquinone to an aldehyde intermediate (E)-3''-oxo-geranylhydroquinone. However, the gene encoding the oxidoreductase that catalyzes the branch reaction remains unidentified. In this study, we discovered a candidate gene belonging to the cinnamyl alcohol dehydrogenase family, AeHGO, through coexpression analysis of transcriptome data sets of shikonin-proficient and shikonin-deficient cell lines of A. euchroma. In biochemical assays, purified AeHGO protein reversibly oxidized (Z)-3''-hydroxy-geranylhydroquinone to produce (E)-3''-oxo-geranylhydroquinone followed by reversibly reducing (E)-3''-oxo-geranylhydroquinone to (E)-3''-hydroxy-geranylhydroquinone, resulting in an equilibrium mixture of the three compounds. Time course analysis and kinetic parameters showed that the reduction of (E)-3''-oxo-geranylhydroquinone was stereoselective and efficient in presence of NADPH, which determined that the overall reaction proceeded from (Z)-3''-hydroxy-geranylhydroquinone to (E)-3''-hydroxy-geranylhydroquinone. Considering that there is a competition between the accumulation of shikonin and shikonofuran derivatives in cultured plant cells, AeHGO is supposed to play an important role in the metabolic regulation of the shikonin biosynthetic pathway. Characterization of AeHGO should help expedite the development of metabolic engineering and synthetic biology toward production of shikonin derivatives.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | - Luqi Huang
- *Correspondence: Luqi Huang, ; Sheng Wang, ; Lanping Guo,
| | - Sheng Wang
- *Correspondence: Luqi Huang, ; Sheng Wang, ; Lanping Guo,
| | - Lanping Guo
- State Key Laboratory Breeding Base of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
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Tatsumi K, Ichino T, Isaka N, Sugiyama A, Moriyoshi E, Okazaki Y, Higashi Y, Kajikawa M, Tsuji Y, Fukuzawa H, Toyooka K, Sato M, Ichi I, Shimomura K, Ohta H, Saito K, Yazaki K. Excretion of triacylglycerol as a matrix lipid facilitating apoplastic accumulation of a lipophilic metabolite shikonin. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:104-117. [PMID: 36223279 DOI: 10.1093/jxb/erac405] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Accepted: 10/11/2022] [Indexed: 06/16/2023]
Abstract
Plants produce a large variety of lipophilic metabolites, many of which are secreted by cells and accumulated in apoplasts. These compounds often play a role to protect plants from environmental stresses. However, little is known about how these lipophilic compounds are secreted into apoplastic spaces. In this study, we used shikonin-producing cultured cells of Lithospermum erythrorhizon as an experimental model system to analyze the secretion of lipophilic metabolites, taking advantage of its high production rate and the clear inducibility in culture. Shikonin derivatives are lipophilic red naphthoquinone compounds that accumulate exclusively in apoplastic spaces of these cells and also in the root epidermis of intact plants. Microscopic analysis showed that shikonin is accumulated in the form of numerous particles on the cell wall. Lipidomic analysis showed that L. erythrorhizon cultured cells secrete an appreciable portion of triacylglycerol (24-38% of total triacylglycerol), composed predominantly of saturated fatty acids. Moreover, in vitro reconstitution assay showed that triacylglycerol encapsulates shikonin derivatives with phospholipids to form lipid droplet-like structures. These findings suggest a novel role for triacylglycerol as a matrix lipid, a molecular component involved in the secretion of specialized lipophilic metabolites.
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Affiliation(s)
- Kanade Tatsumi
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, 611-0011, Japan
| | - Takuji Ichino
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, 611-0011, Japan
| | - Natsumi Isaka
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, 611-0011, Japan
| | - Akifumi Sugiyama
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, 611-0011, Japan
| | - Eiko Moriyoshi
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, 611-0011, Japan
| | - Yozo Okazaki
- RIKEN Center for Sustainable Resource Science, Yokohama, 230-0045, Japan
| | - Yasuhiro Higashi
- RIKEN Center for Sustainable Resource Science, Yokohama, 230-0045, Japan
| | - Masataka Kajikawa
- Graduate School of Biostudies, Kyoto University, Kyoto, 606-8501, Japan
| | - Yoshinori Tsuji
- Graduate School of Biostudies, Kyoto University, Kyoto, 606-8501, Japan
| | - Hideya Fukuzawa
- Graduate School of Biostudies, Kyoto University, Kyoto, 606-8501, Japan
| | - Kiminori Toyooka
- RIKEN Center for Sustainable Resource Science, Yokohama, 230-0045, Japan
| | - Mayuko Sato
- RIKEN Center for Sustainable Resource Science, Yokohama, 230-0045, Japan
| | - Ikuyo Ichi
- Institute for Human Life Innovation, Ochanomizu University, Tokyo 112-8610, Japan
| | - Koichiro Shimomura
- Graduate School of Life Sciences, Toyo University, Gunma, 374-0193, Japan
| | - Hiroyuki Ohta
- School of Life Science and Technology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan
| | - Kazuki Saito
- RIKEN Center for Sustainable Resource Science, Yokohama, 230-0045, Japan
- Plant Molecular Science Center, Chiba University, Chiba, 260-8675, Japan
| | - Kazufumi Yazaki
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji, 611-0011, Japan
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Ahmad M, Varela Alonso A, Koletti AE, Rodić N, Reichelt M, Rödel P, Assimopoulou AN, Paun O, Declerck S, Schneider C, Molin EM. Dynamics of alkannin/shikonin biosynthesis in response to jasmonate and salicylic acid in Lithospermum officinale. Sci Rep 2022; 12:17093. [PMID: 36224205 PMCID: PMC9554848 DOI: 10.1038/s41598-022-21322-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Accepted: 09/26/2022] [Indexed: 01/04/2023] Open
Abstract
Alkannin/shikonin and their derivatives are specialised metabolites of high pharmaceutical and ecological importance exclusively produced in the periderm of members of the plant family Boraginaceae. Previous studies have shown that their biosynthesis is induced in response to methyl jasmonate but not salicylic acid, two phytohormones that play important roles in plant defence. However, mechanistic understanding of induction and non-induction remains largely unknown. In the present study, we generated the first comprehensive transcriptomic dataset and metabolite profiles of Lithospermum officinale plants treated with methyl jasmonate and salicylic acid to shed light on the underlying mechanisms. Our results highlight the diverse biological processes activated by both phytohormones and reveal the important regulatory role of the mevalonate pathway in alkannin/shikonin biosynthesis in L. officinale. Furthermore, by modelling a coexpression network, we uncovered structural and novel regulatory candidate genes connected to alkannin/shikonin biosynthesis. Besides providing new mechanistic insights into alkannin/shikonin biosynthesis, the generated methyl jasmonate and salicylic acid elicited expression profiles together with the coexpression networks serve as important functional genomic resources for the scientific community aiming at deepening the understanding of alkannin/shikonin biosynthesis.
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Affiliation(s)
- Muhammad Ahmad
- grid.4332.60000 0000 9799 7097Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Tulln, Austria ,grid.10420.370000 0001 2286 1424Department of Botany and Biodiversity Research, University of Vienna, Vienna, Austria
| | - Alicia Varela Alonso
- grid.506382.aInstitut für Pflanzenkultur GmbH & Co. KG., Schnega, Germany ,grid.7942.80000 0001 2294 713XEarth and Life Institute, Université Catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Antigoni E. Koletti
- grid.4793.90000000109457005Department of Chemical Engineering, Laboratory of Organic Chemistry and Center of Interdisciplinary Research and Innovation, Natural Products Research Centre of Excellence (NatPro-AUTh), Aristotle University of Thessaloniki, Thessaloníki, Greece
| | - Nebojša Rodić
- grid.4793.90000000109457005Department of Chemical Engineering, Laboratory of Organic Chemistry and Center of Interdisciplinary Research and Innovation, Natural Products Research Centre of Excellence (NatPro-AUTh), Aristotle University of Thessaloniki, Thessaloníki, Greece
| | - Michael Reichelt
- grid.418160.a0000 0004 0491 7131Department of Biochemistry, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Philipp Rödel
- grid.506382.aInstitut für Pflanzenkultur GmbH & Co. KG., Schnega, Germany
| | - Andreana N. Assimopoulou
- grid.4793.90000000109457005Department of Chemical Engineering, Laboratory of Organic Chemistry and Center of Interdisciplinary Research and Innovation, Natural Products Research Centre of Excellence (NatPro-AUTh), Aristotle University of Thessaloniki, Thessaloníki, Greece
| | - Ovidiu Paun
- grid.10420.370000 0001 2286 1424Department of Botany and Biodiversity Research, University of Vienna, Vienna, Austria
| | - Stéphane Declerck
- grid.7942.80000 0001 2294 713XEarth and Life Institute, Université Catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Carolin Schneider
- grid.506382.aInstitut für Pflanzenkultur GmbH & Co. KG., Schnega, Germany
| | - Eva M. Molin
- grid.4332.60000 0000 9799 7097Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Tulln, Austria
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Li H, Matsuda H, Tsuboyama A, Munakata R, Sugiyama A, Yazaki K. Inventory of ATP-binding cassette proteins in Lithospermum erythrorhizon as a model plant producing divergent secondary metabolites. DNA Res 2022; 29:6596041. [PMID: 35640979 PMCID: PMC9195045 DOI: 10.1093/dnares/dsac016] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2021] [Accepted: 05/26/2022] [Indexed: 02/07/2023] Open
Abstract
ATP-binding cassette (ABC) proteins are the largest membrane transporter family in plants. In addition to transporting organic substances, these proteins function as ion channels and molecular switches. The development of multiple genes encoding ABC proteins has been associated with their various biological roles. Plants utilize many secondary metabolites to adapt to environmental stresses and to communicate with other organisms, with many ABC proteins thought to be involved in metabolite transport. Lithospermum erythrorhizon is regarded as a model plant for studying secondary metabolism, as cells in culture yielded high concentrations of meroterpenes and phenylpropanoids. Analysis of the genome and transcriptomes of L. erythrorhizon showed expression of genes encoding 118 ABC proteins, similar to other plant species. The number of expressed proteins in the half-size ABCA and full-size ABCB subfamilies was ca. 50% lower in L. erythrorhizon than in Arabidopsis, whereas there was no significant difference in the numbers of other expressed ABC proteins. Because many ABCG proteins are involved in the export of organic substances, members of this subfamily may play important roles in the transport of secondary metabolites that are secreted into apoplasts.
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Affiliation(s)
- Hao Li
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji 611-0011, Japan
| | - Hinako Matsuda
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji 611-0011, Japan
| | - Ai Tsuboyama
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji 611-0011, Japan
| | - Ryosuke Munakata
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji 611-0011, Japan
| | - Akifumi Sugiyama
- Research Institute for Sustainable Humanosphere, Kyoto University, Uji 611-0011, Japan
| | - Kazufumi Yazaki
- To whom correspondence should be addressed. Tel. +81 774 38 3617.
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Kiyoto S, Ichino T, Awano T, Yazaki K. Improved Chemical Fixation of Lipid-Secreting Plant Cells for Transmission Electron Microscopy. Microscopy (Oxf) 2022; 71:206-213. [PMID: 35388424 PMCID: PMC9340797 DOI: 10.1093/jmicro/dfac018] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Revised: 03/23/2022] [Accepted: 04/05/2022] [Indexed: 11/13/2022] Open
Abstract
Cultured Lithospermum erythrorhizon cells were fixed with a new fixation method to visualize the metabolism of shikonin derivatives, the lipophilic naphthoquinone pigments in Boraginaceae. The new fixation method combined glutaraldehyde containing malachite green, imidazole–osmium and p-phenylenediamine treatments, and cells were then observed with a transmission electron microscope. The method prevented the extraction of lipids, including shikonin derivatives, and improved the visualization of subcellular structures, especially the membrane system, when compared with that of conventional fixation. The improved quality of the transmission electron micrographs is because malachite green ionically binds to the plasma membrane, organelles and lipids and acts as a mordant for electron staining with osmium tetroxide. Imidazole promotes the reaction of osmium tetroxide, leading to enhanced electron staining. p-Phenylenediamine reduces osmium tetroxide bound to cellular materials and increases the electron density. This protocol requires only three additional reagents over conventional chemical fixation using glutaraldehyde and osmium tetroxide.
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Affiliation(s)
- Shingo Kiyoto
- Laboratory of Tree Cell Biology, Division of Forest and Biomaterials Science, Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
| | - Takuji Ichino
- Laboratory of Plant Gene Expression, Research Institute for Sustainable Humanosphere (RISH), Kyoto University, Uji, Kyoto, 611-0011, Japan
| | - Tatsuya Awano
- Laboratory of Tree Cell Biology, Division of Forest and Biomaterials Science, Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
| | - Kazufumi Yazaki
- Laboratory of Plant Gene Expression, Research Institute for Sustainable Humanosphere (RISH), Kyoto University, Uji, Kyoto, 611-0011, Japan
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Song W, Zhuang Y, Liu T. CYP82AR Subfamily Proteins Catalyze C-1' Hydroxylations of Deoxyshikonin in the Biosynthesis of Shikonin and Alkannin. Org Lett 2021; 23:2455-2459. [PMID: 33728922 DOI: 10.1021/acs.orglett.1c00360] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Shikonin and S-enantiomer alkannin are important naphthoquinone derivatives present in many Boraginaceae species. We report that cytochrome P450 monooxygenases (CYPs) from a new CYP82AR subfamily catalyzed hydroxylations of deoxyshikonin at C-1' position of isoprenoid side chain. Two homologues were discovered from each species of the four Boraginaceae plants. One CYP preferred converting deoxyshikonin into shikonin, and the other stereoselectively hydroxylated deoxyshikonin into alkannin. The discovery might be a general feature of shikonin/alkannin-producing Boraginaceae plants.
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Affiliation(s)
- Wan Song
- Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
| | - Yibin Zhuang
- Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
| | - Tao Liu
- Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
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