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Jung SH, Cho SM, Yim SH, Kim SH, Park HC, Cho ML, Shim SC, Kim TH, Park SH, Chung YJ. Developing a Risk-scoring Model for Ankylosing Spondylitis Based on a Combination of HLA-B27, Single-nucleotide Polymorphism, and Copy Number Variant Markers. J Rheumatol 2016; 43:2136-2141. [PMID: 27909141 DOI: 10.3899/jrheum.160347] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/16/2016] [Indexed: 12/22/2022]
Abstract
OBJECTIVE To develop a genotype-based ankylosing spondylitis (AS) risk prediction model that is more sensitive and specific than HLA-B27 typing. METHODS To develop the AS genetic risk scoring (AS-GRS) model, 648 individuals (285 cases and 363 controls) were examined for 5 copy number variants (CNV), 7 single-nucleotide polymorphisms (SNP), and an HLA-B27 marker by TaqMan assays. The AS-GRS model was developed using logistic regression and validated with a larger independent set (576 cases and 680 controls). RESULTS Through logistic regression, we built the AS-GRS model consisting of 5 genetic components: HLA-B27, 3 CNV (1q32.2, 13q13.1, and 16p13.3), and 1 SNP (rs10865331). All significant associations of genetic factors in the model were replicated in the independent validation set. The discriminative ability of the AS-GRS model measured by the area under the curve was excellent: 0.976 (95% CI 0.96-0.99) in the model construction set and 0.951 (95% CI 0.94-0.96) in the validation set. The AS-GRS model showed higher specificity and accuracy than the HLA-B27-only model when the sensitivity was set to over 94%. When we categorized the individuals into quartiles based on the AS-GRS scores, OR of the 4 groups (low, intermediate-1, intermediate-2, and high risk) showed an increasing trend with the AS-GRS scores (r2 = 0.950) and the highest risk group showed a 494× higher risk of AS than the lowest risk group (95% CI 237.3-1029.1). CONCLUSION Our AS-GRS could be used to identify individuals at high risk for AS before major symptoms appear, which may improve the prognosis for them through early treatment.
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Affiliation(s)
- Seung-Hyun Jung
- From the Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea, College of Medicine; Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea, College of Medicine; Hanyang University Hospital for Rheumatic Diseases; Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital, Seoul; Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital, Daejeon, South Korea.,S.H. Jung, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.M. Cho, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Yim, MD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Kim, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; H.C. Park, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; M.L. Cho, PhD, Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea; S.C. Shim, MD, PhD, Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital; T.H. Kim, MD, PhD, Hanyang University Hospital for Rheumatic Diseases; S.H. Park, MD, PhD, Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital; Y.J. Chung, MD, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea
| | - Sung-Min Cho
- From the Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea, College of Medicine; Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea, College of Medicine; Hanyang University Hospital for Rheumatic Diseases; Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital, Seoul; Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital, Daejeon, South Korea.,S.H. Jung, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.M. Cho, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Yim, MD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Kim, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; H.C. Park, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; M.L. Cho, PhD, Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea; S.C. Shim, MD, PhD, Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital; T.H. Kim, MD, PhD, Hanyang University Hospital for Rheumatic Diseases; S.H. Park, MD, PhD, Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital; Y.J. Chung, MD, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea
| | - Seon-Hee Yim
- From the Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea, College of Medicine; Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea, College of Medicine; Hanyang University Hospital for Rheumatic Diseases; Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital, Seoul; Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital, Daejeon, South Korea.,S.H. Jung, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.M. Cho, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Yim, MD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Kim, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; H.C. Park, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; M.L. Cho, PhD, Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea; S.C. Shim, MD, PhD, Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital; T.H. Kim, MD, PhD, Hanyang University Hospital for Rheumatic Diseases; S.H. Park, MD, PhD, Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital; Y.J. Chung, MD, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea
| | - So-Hee Kim
- From the Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea, College of Medicine; Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea, College of Medicine; Hanyang University Hospital for Rheumatic Diseases; Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital, Seoul; Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital, Daejeon, South Korea.,S.H. Jung, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.M. Cho, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Yim, MD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Kim, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; H.C. Park, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; M.L. Cho, PhD, Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea; S.C. Shim, MD, PhD, Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital; T.H. Kim, MD, PhD, Hanyang University Hospital for Rheumatic Diseases; S.H. Park, MD, PhD, Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital; Y.J. Chung, MD, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea
| | - Hyeon-Chun Park
- From the Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea, College of Medicine; Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea, College of Medicine; Hanyang University Hospital for Rheumatic Diseases; Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital, Seoul; Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital, Daejeon, South Korea.,S.H. Jung, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.M. Cho, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Yim, MD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Kim, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; H.C. Park, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; M.L. Cho, PhD, Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea; S.C. Shim, MD, PhD, Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital; T.H. Kim, MD, PhD, Hanyang University Hospital for Rheumatic Diseases; S.H. Park, MD, PhD, Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital; Y.J. Chung, MD, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea
| | - Mi-La Cho
- From the Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea, College of Medicine; Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea, College of Medicine; Hanyang University Hospital for Rheumatic Diseases; Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital, Seoul; Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital, Daejeon, South Korea.,S.H. Jung, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.M. Cho, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Yim, MD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Kim, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; H.C. Park, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; M.L. Cho, PhD, Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea; S.C. Shim, MD, PhD, Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital; T.H. Kim, MD, PhD, Hanyang University Hospital for Rheumatic Diseases; S.H. Park, MD, PhD, Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital; Y.J. Chung, MD, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea
| | - Seung-Cheol Shim
- From the Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea, College of Medicine; Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea, College of Medicine; Hanyang University Hospital for Rheumatic Diseases; Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital, Seoul; Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital, Daejeon, South Korea.,S.H. Jung, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.M. Cho, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Yim, MD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Kim, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; H.C. Park, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; M.L. Cho, PhD, Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea; S.C. Shim, MD, PhD, Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital; T.H. Kim, MD, PhD, Hanyang University Hospital for Rheumatic Diseases; S.H. Park, MD, PhD, Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital; Y.J. Chung, MD, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea
| | - Tae-Hwan Kim
- From the Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea, College of Medicine; Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea, College of Medicine; Hanyang University Hospital for Rheumatic Diseases; Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital, Seoul; Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital, Daejeon, South Korea.,S.H. Jung, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.M. Cho, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Yim, MD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Kim, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; H.C. Park, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; M.L. Cho, PhD, Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea; S.C. Shim, MD, PhD, Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital; T.H. Kim, MD, PhD, Hanyang University Hospital for Rheumatic Diseases; S.H. Park, MD, PhD, Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital; Y.J. Chung, MD, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea
| | - Sung-Hwan Park
- From the Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea, College of Medicine; Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea, College of Medicine; Hanyang University Hospital for Rheumatic Diseases; Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital, Seoul; Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital, Daejeon, South Korea.,S.H. Jung, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.M. Cho, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Yim, MD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Kim, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; H.C. Park, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; M.L. Cho, PhD, Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea; S.C. Shim, MD, PhD, Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital; T.H. Kim, MD, PhD, Hanyang University Hospital for Rheumatic Diseases; S.H. Park, MD, PhD, Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital; Y.J. Chung, MD, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea
| | - Yeun-Jun Chung
- From the Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea, College of Medicine; Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea, College of Medicine; Hanyang University Hospital for Rheumatic Diseases; Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital, Seoul; Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital, Daejeon, South Korea. .,S.H. Jung, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.M. Cho, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Yim, MD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; S.H. Kim, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; H.C. Park, MS, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea; M.L. Cho, PhD, Rheumatism Research Center, Catholic Research Institutes of Medical Science, The Catholic University of Korea; S.C. Shim, MD, PhD, Division of Rheumatology, Daejeon Rheumatoid and Degenerative Arthritis Center, Chungnam National University Hospital; T.H. Kim, MD, PhD, Hanyang University Hospital for Rheumatic Diseases; S.H. Park, MD, PhD, Division of Rheumatology, Department of Internal Medicine, Seoul St. Mary's Hospital; Y.J. Chung, MD, PhD, Integrated Research Center for Genome Polymorphism, Department of Microbiology, The Catholic University of Korea.
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